Array 1 82279-81701 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIEG01000153.1 Escherichia coli strain 76-A58-A entry153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82278 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 82217 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 82156 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 82095 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 82034 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 81973 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 81912 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 81851 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 81790 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 81729 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65-1679 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIEG01000224.1 Escherichia coli strain 76-A58-A entry224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 126 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 187 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 248 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 309 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 370 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 431 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 492 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 553 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 614 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 675 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 736 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 797 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 858 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 919 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 980 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 1041 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 1102 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 1163 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 1224 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 1285 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 1346 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1407 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 1468 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1529 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1590 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1651 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //