Array 1 274401-274893 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907209.1 Actinomadura atramentaria DSM 43919 strain SF2197 G339DRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 274401 29 93.3 37 A...-......................... CGCCGATCATCAGGCCCGTGACCCACGGCCCGGCCAG 274467 30 96.7 36 ..........T................... CGGTTGTCGTGTCGCGTGTGGCCGTATCGGGCCACA 274533 30 100.0 39 .............................. GATCGCGGCCTCCCAGTCGCTCGGCTCGCACCACCCGAT 274602 30 100.0 36 .............................. AGCATCGCTGCGTCCCTGGAGAGCCCGGCGGTGATG 274668 30 100.0 35 .............................. GTCAGCCCGTCGCTGATCGGCAACTTGCTCAAGGT 274733 30 100.0 33 .............................. CGGTGCCGTCGCCGTCGGACTGCTCGGCGGCGG 274796 30 100.0 38 .............................. TGGGCGATCTCGGCGTCCGGGGTGTGTCGCGACGGCTC 274864 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 98.8 36 GTTGCGAACCCTCGCAGGGTGATGAGCAGG # Left flank : TTGTCGCTGGCATGACGACTGCATCCTTCGATCCGCGCGCGCTGCTGGCGGCGAGCCGCCTCGGCGTGCTCGCGACGATCAAGTCGGACGGCCGCCCGCAGCTCTCGCCCGTCATGCCGTACTTCGACGCGGCCGCGGGCGTCCTGTACGTCTCGATGACCGAGGGCCGCGCGAAGACCGCGAACCTGCGCCGCGACCCGCGCGCGGCCCTGGAGGTCACGAGCGCCGACGGCCGCTCCTGGGCGACCGCCGAGGGCCCGGTCACCCTCACCGGCCCGGGCACCGACCCGCACGGCCCGGAGGTCGAGGCCCTGGTGGACTACTACCGCCTCGCGGCCGGAGAGCACCCGGACTGGGACGAGTACCGCACAGTGATGGTCGCGGACCGCCGCGTACTGATGACGATGGCGGTCGACCATGTCTACGGCGAAACGATCGCCTGACGAAACACAGCGCCGCGCGCCGGTCTCCGACCGGCGCGCGGCACTGTGCTTCATGAG # Right flank : GACCAGAGTAAAGCCGCTGGTCGGCAGGGGGCCGTGGGTGGGCTTGCCGACCATTTTTGCAATGAACCTCCGGTCGTGCAGGAACCCTGGGAGGTTCGCTGAAAAGACGGGGTCGTCTGTTTGACCCGACGCGCTGCTGAGCAGCGCGCCGGGTCTGGAACGACCTTAGTCTTCGCGGGCCGCTGAGGTCGGGCTCATGTCGGCGCAGCGGTCGCCCGCCACCTGGGCGGCGATCGGTTCGAGTTTCTTGAGTTCGTCGTCGGTCAGGGTGATGCGGGTCGCGGCGGCGTTCTCCAGGAGGCGGGCGCGGCGGCGCGTGCCCGGGATGGGGACGACGGTCAGGTCGTGGACCCGCGCGCGCTGCTGCACCCAGGCGAGGGCGATCTGGGCGATGGTCGCGTCGTGGTCGGCGGCGATCTCGCGCAGGGGCGTCAGCAGGGCGGCGTTCGCGGCGGCGTTGTCGCCGGTGAAGCGCGGCATCAGCCGCCGGAAGTCGTTGT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCGCAGGGTGATGAGCAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 508110-508505 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907209.1 Actinomadura atramentaria DSM 43919 strain SF2197 G339DRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 508110 29 100.0 32 ............................. CGGTGTGGGCCTGGGTCCTGGACCACCCTGAC 508171 29 96.6 32 ............................C AGGAGGCCAGGGCCACGGCCGACCTGGAGCTG 508232 29 100.0 32 ............................. GCGCTCCGGGCGGGGGTCAGCCAGGAGGCGGC 508293 29 100.0 32 ............................. ATCCGACCCCACCCGCTCGGCGGGTCGAGGCG 508354 29 100.0 32 ............................. GAGCGGTTCAAGGCGGCGACCCGCAACGGCGT 508415 29 96.6 32 ..........................T.. GACCGGGATCAGGCGCGCCTTGTCTACGACGG 508476 29 75.9 0 ...T......T.TG..T........T.G. | G [508499] ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.6 32 GTTCTCCCCGCGCAGGCGGGGGTGTGCCG # Left flank : ACCGCCTCGCCGTGCTCGAAGCGGCTGACCTGGGACTTGCTGCAAGCGATCTTCTCGCCGAGCTGTTCCAGGGTCCATTCCTTCTCATCCCGGTTCGTCCGGATGCGCCAGCCGTAGTGCTGGGGGAAGGACGCACTGGGGTCGAGCTGTTTGGGGGGCGTCACGGAATCTCCCACCTCTCACGCCGGGGAACGGTTCGATCTCAGAGCGTAGGCGTCTCCCGTCGATTCGGCCGTGGAAACCGAGAAGTGAGCGCAGATCATCTCAAGCACCGCGCGCCAGCCGCGCCAGCCAGACCACCGCCCACCCGCGCCGCCCACTCCCAGCCACCACCGAACCGAGCCCATGACCGAACCCCCGAGGCGTCGAGCCGTGGCGGCTCGCAAGAACAGCCCCGTCCCGTTCCCACCGTCGTAGAATCACCGACATAAGGCGACAGCTTCCGACCCACTTCCGGCATCAAACTGGTAACGGCCCCGCTCAGCCGCAGGTCGCGAAGT # Right flank : GTCGGCGGTGGTTGCATGGCCGTTGGCGGGGGTGCGGGCGACCGGGTCAGGTGTAGCCGTTGGTGATGAGCGCGCGGGCCATCGTTGTGTAGGCGCGGTCGTCGGTGGGGGTTTGGGTGGCCAGGCCGTCGACGTAGCGGTTGAACATGCAGAATGCGGCGGCGATGAGGACCGTGTCGTGGATTTCGCGGTCGGTGGCGCCTGCGGCGCGGGCGGCGTCGATGGTCTCGGGCGTGACCGTGTGGCCGCTCTCGCGGACGGCTTCGGCTAGGCGCAGCAGGGCGCGCAGGCGCGGCGTGATCGGCGCGGTGTCCGGGTCGGCGCGGACGCGTGCGAGGACGTCCGCGCCGTCGTCCAGTTGCTCGATCGCGCACGCGCCGTGCGAGGACGCGCAGAAACGGCACTCGTTCAGCTCCGACACGTGCGCGGCGATCAGCTCGCGCTCGCCCAGGGACAGCGGGCCGGGGCCGCGAAGCAGCGCCTCGGCGAGGGCCCGCAGC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCAGGCGGGGGTGTGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 599773-600072 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907209.1 Actinomadura atramentaria DSM 43919 strain SF2197 G339DRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 599773 30 83.3 36 ..C......T...T....TC.......... CCGCCTCGCGCGATCCGCCGCCGAACTCAGCAATGT 599839 30 100.0 37 .............................. CCGGACCGCCACGCCAGCGTCTCGCCGTACCGGCGCG 599906 30 100.0 38 .............................. GACTTCGAGGACCGCGACGCCCGGCTCCGCTTCACCAC 599974 30 100.0 39 .............................. CTGATGTTCTGCGTCATGTACGGATCGAACCCGAACACG 600043 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 96.7 38 GTTGCGAACCCTCGCAGGGTGGATGAGGAC # Left flank : GGAGGTGCTGCCGGACGCCGCCGAGCACCGGGCGCTGCTCGCCCGCGTGCAGGAGACGTTCCGGCGGGACGGCCTGATGCCCGCCGTCATGGAGTTCGCGGCGGGGCTGCGGCGGCCCGGCGACGAGGCTCCCGAACTCCCCGCGGAACTGCCGCCGCAGGCCGCGGCGCGCGCTCAGCGGACGATGGCGAACATGCCCTACTTCCTCGGCCGCATCGTGCCGAGCTTCATGGCGTATACGCCGGACGTCGACCGGTTGGCGGCGTTGTCGGGGCAGCTCGTTCTCGCAGGCGGCGTGGATTCGCGCGGGGAATTGCCGTACCGGCCCGCCGCTTTCCTGGCCGAACGGTTCGGCACGGAACTCGTCCAATTCCCCGGAGGTCACACCGGTCTCAGCAGTCACCCGGCCGAGTTCGCGGCGGTTCTCCGGAAGGTGCTCGACCTCGATTGATCCCTTTCGGCCTGCGGCGCTTCCACTCCCGATTCAATCGGCCATCGAC # Right flank : CCCCAGGGTAAAGCCGCAGGTCCCGCTGGGGTCAAGCCGGGGTGCTGAGGCGCGTTTTGCAGCGAACCTCCGGTCGTGCGGAAACCCTGGGAGGTTCGCTGCAGAACGGCCGGGCGAGTGATGGGTCGGTCGCGGCGTGTGAGGGCCGGGTGGGCGTCCGGCCGTGTTCGGGGAGGGCGGGTTATTTGCCGAGGCGGGCGGCGTTGGCGGCGCGGCGGGCGAAGACCTCGTCCTGGGCGGTCTCCATTTCGCGGAGCGCGGACTTGCGCTCGCGGTTGGAGAGGCGGTCCAGGTAAAGGCGGCCGTGCAGGTGGTCGGTCTCGTGCTGGAGGCAGCGGGCGAAATAGCCGCGGCCCTCGATGACGAGCGGATTCCCGTCCTTGTCGAAACCGCGGACGACGGCGTGGTCGAGGCGCGGGACCGTCCTATAAGGGCCGGGGACGGAAAGGCAGCCCTCGTTCTCCTTGATGAGCCGGCGTTCGCCCGTCGGGACCTCGTCC # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCGCAGGGTGGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 12801-13255 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907231.1 Actinomadura atramentaria DSM 43919 strain SF2197 G339DRAFT_scaffold00024.24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12801 29 100.0 32 ............................. TCAGCCGTAGCGGTCTCAGCCGTGGCGGTCGA 12862 29 100.0 32 ............................. CAGTTGTGGTTGGAGCAGCGGCAGGCGCGGCT 12923 29 100.0 32 ............................. CGGGATCGGGGCGTCAGCGGACGAGCGCGCCC 12984 29 96.6 32 ...............A............. GTGTAGGTCGTCCCGCGCTTGAGCCCGGTGAT 13045 28 93.1 32 ....................-...T.... ATGCGGGCGTGGTAGGTCTCGTATGGGGACAC 13105 29 100.0 32 ............................. GTCTGAGCCGCCGGGTCGCCGCTCTTCAGGAA 13166 29 100.0 32 ............................. CCGACAGCGGCGAGAACCTGCCGAAGCGCGGC 13227 29 89.7 0 ................T.........TA. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : CGGTTCGACGCCGTCGTGATCTCTGATCGGGTTGGGCTGCGCAAGCCCGATCCGCGGATCTATCGGTTGTGCGTCGAAAAGATTGGATTGACGGCGTCGGAGTGCGTGTTCGTCGATGACACCGCCCACAACCTTCCACCGGCCGAGGACCTGGGCATGGCGACGGTGCTGTTCACCGATGTCGCAGCCGGTGTCCCGCAGATCGAAGCGCTGCTTCGCCCGGTCTGACCGGGTCGTGGCAGGTGAGTCGGGGCGGGTCGACGGCCCGCTGGCGGACCGCCGACCCGGAGCATTCGCCGGGGGGAACCGTCGAGCGGATTCAACTTCGCGGTCGAAGGCGCGTCGATGCGGTGGTGGGACGTCCGTGGTCATGGCACGGTTGTCGGGTGCGTCGGCGCGGAGCGCGAGCGTCGCAATCACCCCTCTTGGGGCGTTTGCCGGGCTTGATGGAAGTGATAATTTTCGGGTGTTGCGGCTGACTGCGACCCAGGTCAGCAAGT # Right flank : CGGGTAGTTCGGCGTCAGATTTTTCTCAGGCGGTTCTTGTCCAGCCTTGGGTTGTCCGGCTGGTGGGGGACAGGGTGCCTTCGGTGGTGCGGCGGGTTACCTCGGTCCATTCGCGTGTTACGCGGCGGTGGCCGTCTGGGGTTTCGTGCCAGTTTTCTCGGGTGACCGGGTTGTTGGCGTAGATGGGTTCCCAGCCTAGGGCGTGGAAAGTGTTCAGGTTGGGTACCAGGGTTGCCAGTAGGCTTATTGTGCGGCGGTGGAACCATTTGCTGATGGCGGTTATCGGGAGGTCGGCTGCCAGTGCTTCGTTGATGTAGGAGAGGGCGTTCTCTATGTTCTGCTGGGTGTTGGACGAGCGGTCTTCGTAGCGGATCGCTGATTCGGGGACGTCGCGGTCGCGTAGTAGCCGGTGGAACATCTGGCCTTCGATTACTCCGTTGTGGCGGTTGATGCCTCCGGTGGCGATGATTAATGGGGCATGGCCTCGGTGGTGCAGCTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26242-26018 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907228.1 Actinomadura atramentaria DSM 43919 strain SF2197 G339DRAFT_scaffold00021.21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 26241 30 100.0 35 .............................. GTGTTGGTGGGGAGCTGAGTGACGCCGGGCAGGTA 26176 30 100.0 32 .............................. CAGGTCCGCCAGGACCGTCGCGACGGTCCGCC 26114 30 93.3 37 ................A..........A.. ACCAGCAGACGGCCGTCCACGTCGTCCGGCGCGCGAC 26047 30 96.7 0 ................A............. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 97.5 35 GTTGCGAACCCTCGCAGGGGTGATGAGGAC # Left flank : GAACCCTCGCAGGGGTGATGAGGACAGGCGAGCGCGCCGCCGACCGGCTCGTCCGGTTGTGCG # Right flank : CCCAGGGTAAAGCCGCAGGTCGCTGACGGCTAGGGGCGGCGGAGGGGGCTGTGTTTTGCAGCGGACCTCCGGTTGTGCAGAAACCCCTTGGAGGTTCGCTGCATTTCGCTGTTCACCGTGTTCGGCTGGTTACTGAGAGTCGTCGTGTGTCGTGGGTGGTCTTTTGGTGCTTCGTGGGGGTTAGGGCCTGGTTGTCGTTTTCGCTTTTTGGTCCTGGTGGCACGTTAGTGGGGGCGGGCAGTGGTGGGTGGGTGTGGTGGGTTCTGAGTCGGGCCGGATTGGTCAGATGTTGAAGCGGAATGCTCGGCGGCCGGAGCGGTGCCAGATCATTTCGCCGCCGACCAGTCTGGTCGCGGTCTGGACGATGGCGAGGGCTGCGGGGTTGTCGTCGCGGACCACGATGATCGGGGCGCGGAGGGCCTTGCCGGGGGCCTGTTCGAGGGCGGCGAGCAGCAGCCGGAGGCCGTGGCCCTTGCCTCGGAAGGACGGGCGGATCGACA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCGCAGGGGTGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 170146-169873 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907213.1 Actinomadura atramentaria DSM 43919 strain SF2197 G339DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 170145 29 96.6 32 ......................C...... CTTACCGGGATGAGAGGACTCCGTCATGACAA 170084 29 100.0 32 ............................. GGGGTGGAGACCGGCCGCCGCCTCGCACCGCG 170023 29 100.0 32 ............................. GACGCCGACAGTGCGGGCGGGCGGCTCCGGGC 169962 29 100.0 32 ............................. CTCTCCGCCAACGTGGACTACGACAAGGTGTT 169901 29 89.7 0 ................T.........T.T | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTTCTCCCCGCGCAGGCGGGGGTGGTCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAC # Right flank : GGGAATGGTGAAGCCCTTCCCGGTTGGGGGAAGGGCTTCGTCAGGTCTGGGTCAGAGGGTTTTGATGTGGGCGAGGAGCGTGGCGGCGGTGGTGCGGGTGAGGGTCAGGTGGCCTGCTGTGAGGGCCTTGCTGTCGCGGATGCCGACCATGCCGTCCGCTGAGCCGACCTCGACGCAGTTGCCGCCCTGGCCGCCGCTGTGGGTGCTCTTGCGCCACCGGGTGGACGGAAGATCAAAGCTGGTCACTGTAGCCCTCTCGTGCTTGCCGGATCATGGTCAGGGACTCGGCGCTGGTCAACGCCTCTCCCAACACGAGGTCGAAGCGTATCGCCGTGTCGGCGACGGCGTCGGGGTCGCGTTGAAGCTGACTGCTGCTCGGGCCTTCCACGTAGGCGACGTCGGGACCGTCGGGGAACGACAGCACCAGGAAGCTGCCGTCGAACGCTGCCCACGTGAGGCGGCTGAACGGGAGCATTCTGATCTGGATATGGGCCGTCGTG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCAGGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 173009-172675 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907213.1 Actinomadura atramentaria DSM 43919 strain SF2197 G339DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173008 29 100.0 32 ............................. GGCAGGGGGAGAGGCTCACAGAGAACACCCTG 172947 29 100.0 32 ............................. TTCTGCCTGGTCTGTGAGGTGAAGTTGGGGAG 172886 29 96.6 32 ...........A................. CTCGCCGACACGCTCGGCAAGCTGCTCGGGCA 172825 29 96.6 32 ......................C...... TTCCAGCGCTGGATCAGGGACGGGCGGGTGGG 172764 29 100.0 32 ............................. AAGGCGTGGATGCAGGCGCGGGACCGGCTGCT 172703 29 93.1 0 ..............A......A....... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTTCTCCCCGCGCAGGCGGGGGTGTGCCG # Left flank : AGGGGATCGACACTCCGCGGGCGGCGGCGACGCTCGCGCAGACCCTCTGCACGTGCGCTTACAACGCCGCGCAGGCCGACCGCCGCGACGACGCGCTCATGCTGATCGGAGAGGCGCGCAGCGTCGCCCGTCACCATCTGCCCGACGTTGCCGCACGCGGAGCGCGGCCCGCGTTGACGCGCGCGCAGGTGACGCTGTACGAGGTCGGTGTGCATTGGGCACTCGGCGACTCGGGTCGGGCGTTGAACGTCGGCGCCGGCCTTGACGCCGCAATGTTCCCGACGCCGGAGCGCAAGGCGCGGCTGCACACCGACCTTGCGCGGGCGTGGTGGCAGCGTGACCGTCCCGCCGAGACCGCCCGGCACCTCCTCGAAGCCCACGAATACGCGGCCGGTGAGGTCCGCGACCGCAGCTCGATCCGCCGCATCGCCGACGCACTCGCACGCGACCACGGCCGGGTCGGGGAAGTCCGCATGCTCACCGACCGGCTCAGCCGGTAG # Right flank : AAGAGTATGGTCCCGGCGCTGGCCAAGGACACGCCGTCGCGCTGCTGCTGAACATCGCGTTGCGTTCGGCCGGTTGAAGGGCCTGGCTGTCGGGTCGTTCCTACGTCACCACGATCCCGCGCGTGCGTTCGTTCGGGAGGGGCCGTGCTGTGGGCCAGCAGATGTCGGTGCCGTCATCGGCTGCGCGGAACTACGTCGGCAAAACGTAGACCCGGGCGAACCAGTGGCCGACTTCGGCCTCGTGCAGGTGGCCCGCGATGCCCTGGTCGCCTTCGATGGCCATCGTGACGTGCAGGTGGGGTTCGCCGTTGACGACCTCGCCGGCGCCGTGCATCTCGGCGGGGCGGGTGTAGGTGGTGACGATGTCCGTGGAGGCGTCGTCGGCGGGCATGGTCGAGACGGTGAACTCGTCGACGGCGCCGATCAGGGAAACGATCGCGGCGGAGGTGACGCCGAGGTCGGCGAGCCGCTCGGTGAGCGTGGCGATCAGCGGCCCCTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCAGGCGGGGGTGTGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 259503-260706 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907213.1 Actinomadura atramentaria DSM 43919 strain SF2197 G339DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 259503 37 100.0 35 ..................................... GCCTTGCGGCCCGCGTCGTGCCGGGCATTCAGGTC 259575 37 100.0 36 ..................................... TTCATGACCGGCGCGTCCGCCGGAATCAGCGTCCAC 259648 37 100.0 37 ..................................... CGCCGAAGGGCACGCCGAAGTCGTCGCGACCTGGGAC 259722 37 100.0 35 ..................................... CGACCGCGCGCGTCCATTCGGGAACCATGACGGCC 259794 37 100.0 35 ..................................... GGCACGTCCGCGGCCGACCTGGGCCACATGTACGG 259866 37 100.0 35 ..................................... AAGGCCCCCCGCCATCTGGGTGGCCATACCGCATC 259938 37 100.0 37 ..................................... GGGGTGATGCGGACCTGGCAGGTCAGGACGGGCTCGC 260012 37 100.0 37 ..................................... CGCTCCCCCGGGCTGCCGACTAGACGGCCGCCCGCCG 260086 37 100.0 37 ..................................... ATCGGCGTCGGCGCGTCGGGCATGACGCCGATGAACG 260160 37 100.0 35 ..................................... ACGAACGCCGTCGAGTTGACGACGTAGTCGATCTG 260232 37 100.0 37 ..................................... GGTGGGGTCGGGTTGGGTGGTGTGCGCTGACGTGTCC 260306 37 100.0 35 ..................................... ATCGGTCGTCCGCCGTTGGCGCGCAGGAACTCCCC 260378 37 100.0 36 ..................................... ACGGCGATGCGCGCGTTCGCGGACCGCTGTTCGGGA 260451 37 97.3 35 .....................A............... CACGTCCGGCGGCGCGTCCGGTGGTCGAGCCGCCG 260523 37 100.0 38 ..................................... CTCGACGACCCCCCGGCCACGACGCCCGGCGACCACGA 260598 37 86.5 35 .......C....T...C..A..........G...... GTGTCGTCATCGATGTCACGGGGGCGGACGGGGAG 260670 37 89.2 0 ............T...CT......T............ | ========== ====== ====== ====== ===================================== ====================================== ================== 17 37 98.4 36 GTGGCGCTCGCCCTCGTCGGCGGGCGAGGATCGCAAC # Left flank : TCCTCCCCTCCGTGCAGGCCCGCATCCTCGCCCGGCACATCCGTGGAGAACTCGACGGCTACGTCCCGTGGATCGCGTGATGGAACTGCTGCTCACCTACGACGTCAGCACCGTCACGCCCGAAGGCAAGAACCGACTGCGCCGGGTCGCGAAACTCTGCGAGGGCTACGGCCTGCGCGTCCAGAAATCGGTCTTCGAGATCGTCTGCACGGACGCGGACCTGCTGACCCTGCTCGACAAGATCCAGCGCATCATCGACGGAGCCGAGGACAGCATCCGCGTCTACCGAGTCCCCAAAGGCTCTTTCCGCACCGTCAAAACCCTCGGCATCGCCGAGCCGCTACCCCACGACGACGCACTCATCCTCTAGCTCGGAACCCCCAGTGCCCACCGAATCGCCGGGGGGTTCCGAAGAACGTATCGACATCTTCATGGCAATTGTCCGCTTCACCCGCGAACCCCTTTGGGCACCGAGGGTAATCGTCGCAGGTCAACTGCGG # Right flank : CCCGGCGCGGCCGTGGGCTGCGCGCTGGTGACGATGATGCGGTGCCCGCCTTCGCAGCAGACCAAAAGAGGATGGTCGTGCTAATGGCTGGGTCGGTGAGTTCTGGATGAAGTGTGGGCGGACACGCCGATGGGCGGTGGTGATCGGCGGGTGCTCGGTGGGAAGTTTATGATCAGCTTTAGTCGTAGTTCCAGGCTTCTTGGTGCGTGGGACTCATCGCTTCGATTTGAGAGGAGGTCCTTCAATGTCCATCCTTCGTTGCAACATGTGGAGCGATGCGCATGAGCGTCGAGCAGGGGCCGACTCAGGGCGGCGATACCGAGCAGATCATCCGTGAGGTGCGGGAGCGTGCCGCCGCGCTGGCCGTGAAGATGGCCGGGTCGGTCGGCGGGTCTGATTACGGGACCGCGGAAAAGGTCGTCGGCGGGCTTGCCGACATCGTCAACGAACTGCACGAGACCATCAAGCAGACGGGAACGTTCATCCTCGCGGAGCTGGGG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCTCGCCCTCGTCGGCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.20,-14.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 4 285985-285439 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907213.1 Actinomadura atramentaria DSM 43919 strain SF2197 G339DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 285984 37 100.0 38 ..................................... AGCGCGAGGAGCCGGGCGCGGACCTGGTGCTGTTCGGC 285909 37 97.3 35 ............T........................ ACCGACCGGCTCGGTGAGGCGATCAAGACCGCCGT 285837 37 97.3 36 ............................G........ TGCCCCACTCCGCAGGGCACGCCGGATCAGTGTCGG 285764 37 100.0 37 ..................................... CTGAACGTCGACGAGGCGTTGCGGGACCGCGGCGCGG 285690 37 100.0 36 ..................................... CCCACCTACACCGGCTCCCACCGGCTCCACACCCCG 285617 37 97.3 35 ...............C..................... GACCCTGTCGATCCCGAAAACCCGGTCGCGCCCGG 285545 37 94.6 33 ...............C.A................... ATCAGCTCGGTGAGCGCGGCCTGCAGCATGTCC 285475 36 75.7 0 CA....A.C...T.G......-............GT. | G [285458] ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 95.3 36 GTTTCACCAGCCCTTTGGGGCTGGTCCACGTTGAAGG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGCTGGTCCACGTTGAAGGTCCTCGCTGCGGGCGATGAGGATCGCGGTGAGCGCG # Right flank : CTGTGACGCGATTGGCGTCGGCGTGCGTGTACGCGGATGCGCTTCGGCAATCCTGCAACGGGGCGGGCCCCGATTTGGTTACCAGAGGTTGAGGTCTTCCAGGAGGGTGGCGGCGCGGGGTAGGGGTGGGGTGGGTTTGGTGGTCGTGGTGGCTGGTGGGAGGGGGATTGTGGTGTTGAGGCGGATCATGTTGCGCCAGGTGAGGAGGCGGGTCCAGTAGGTGGGGATGGTGTGGCAGCGGGGCTGGGTGAGGCGGGGGCTGTTGGGGAGGTCGTCGAGGTGGAGGCCGTCGGCGAGGAGGCGGGCGGCGGTTTTGGGGCCGATGCCGGGGACGCCGGGGATGTTGTCCGAGGGGTCGCCGGTGAGGGCCCGGTAGTCGGGCCATTGGCGGGCGGTGACATGGTGGCGGGCGAGGATGTCCGCGGGGGTGATGCGGTGGCGGGCGGGGTTGAGGATGGTGACGGTGTCGGTGGCGAGCTGCAGCAGGTCGCGGTCGCCGG # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCACCAGCCCTTTGGGGCTGGTCCACGTTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.30,-16.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 33-388 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907216.1 Actinomadura atramentaria DSM 43919 strain SF2197 G339DRAFT_scaffold00009.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 33 30 100.0 35 .............................. CACAGCAGCCGCCCGCCCCTCGGGCGTGCGACGGG 98 30 100.0 38 .............................. AGGTGGATGACCTCGGTCAGGTAGTCGTCCCGGTCCAG 166 30 100.0 34 .............................. GCGGTGACGATCAGCAACAGCGGCGCGACCGCGT 230 30 100.0 34 .............................. CCGACCACCCGGCCGCGCCCGGCTCGGCGTCGGT 294 30 100.0 36 .............................. CGGTTCGACGGGCTTGAGCCCACCGCCGGAATGCTG 360 29 83.3 0 ..T.............-.G.A........G | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 97.2 36 GTCCTCATCGCCCCTGCGAGGGTTCGCAAC # Left flank : AAGCTCCGAAAGCAGCCCGTCAACGTAGTCAAG # Right flank : GCGAAGAAGCACGTGGGTCTTGGCCCGGCTATTTGGTGGAGACGTGGAACGCCTCTTCTCGGCCGGGGTGGTCGGGAAGAGGCGTTCTAGGGCTTGCGCTTTGTGCGGAGCGGGTGGGGTCAGAGGGCTCGGATGGCGGTGGTGAAGCGGTGGAAGGACGGGCGGTCCAGGAGAAGGTTCGGGCCTTGCGGGTCCTTGCTGTCGCGGATCGCCACCGTGCCGGGGACCGTTGCGAGTTCGACGCAATTTCCGCCGTTGCCGGAACTGCGAGACGCCTTGCGCCACCGGGCGTTGCTCAGGTCAGCCATACTTCTCCTCGTTCATGCGCTTAGTTAGGCCGACGCTCATAGCGAAGGTCAGAGGGCTCGGATGGCGGTGGTGAAGTGGCGGAAGGACGGGCGGTCCAGGAGAAGGTTCGGGCCTTGCGGGTCCTTGCTGTCGCGGATCGCCACCGTGCCGGGGGCCGTCGCAAGTTCGACGCAGTTCCCGCCGCTGCTGCC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 67859-67371 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907215.1 Actinomadura atramentaria DSM 43919 strain SF2197 G339DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 67858 30 93.3 36 ..C..........A................ CAAGACCATGCGCGCGATGCACGCGCGCGTGGCCGC 67792 30 100.0 33 .............................. CACCGCGTCCGGCCTGATGGACCGGGCGCACAC 67729 30 96.7 36 .......G...................... GGGACATCGCCGACGTCAGCGCCGCCGCGACATCCT 67663 30 93.3 37 ..........................AA.. GCGTGCCGCGCGTCAACGCGAGCGGTTCGTAGGACGT 67596 30 100.0 33 .............................. CACCGCGTCCGGCCTGATGGACCGGGCGCACAC 67533 30 96.7 36 .......G...................... GGGACATCGCCGACGTCAGCGGCGCCTCAACAGCCG 67467 30 100.0 37 .............................. TCAACGGTTGGACCGTCCACGGCACCGTGCAGGAGTC 67400 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 97.5 36 GTTGCGAACCCTCGCAGGGTGGATGAGGAC # Left flank : CAGATTCCCGTGGTGGAGTTGCCGGGCGGGCGGGTGCTCCGTTATCCGGCCGTGGAGGTTCGGCGGCTGCTGGGCGCCCTCGGTGACGATCGCTGAGCCGCTGTGCGTCGGCGCGCTGCATCTGTCGCCGCTTCGGACCGGCGCGGGCGTGCTGCGGTGGCATCCGGTCCCGGCCCCGGAGCGGTTGCGGGTCTTTGCCGGGAGCTGTGAGCGCTGCGCGGACGTCTGGTGGGAGTACGGGTCGCGGGGCGGCGCGTACCTGATCCGCCGGACCGAGATCCACAGCAGGCGGCGCGCCCGATGGGAGACCCCGGCGGTCCGCCGCGTGCTCGCCGCCGAATGGTGGGACATGCTGGTGCGCGGGCGGGCGGCGTAACGGCGACGGCTCCCGCCCTGGAACGGAAGAACGGACCCGACCGCGCGCCACCACCCGGAGCGCCGAGTCAGCCGAGCCCCAACCGGGCACCCGCCCCCGCACGCGGGGCGGGTGCCCGGTCCGC # Right flank : CCCAGGGTAAAGGCGCAGGTCTCGGTGGGGTCGGGGCGGGCTGTGGACGGGAGTTCTGCAATGGACCTCCGGTTGTGCAGAAACCCTGGGAGGTTCGCTGCAAAACGCCCTGTGGGGTGATGATTCGGTTGCGGTCGGTGAGTGTTCGGGTGGGCTCCATTCTCGTCCGTCATAGGACGCGGAGGGAGGAGATCAGGTGGTTCACGTCCGGTAGGTGGTCCTGGGCCGGGCTCGGCATCGTGATGTAGAGGAATGCCGGGCGGCGGTCGCCTGTGTCTATGAGGACGAGGGTGTTGATTTCGCCGGTGATGGACGTCCGGGCTTTGGGGCCGATGGTGACGTGGCGGGTGATGAGCCAGGCTTGGCGGCCGTCGACCGTCAGGGGTTGGGACGCCACGTCCTCGTAGTAGCCGTCGGGCGGGGCGAGCATCGTCAGCGCGTCCAGTTGGGCCAAGGCCGCGTTGAACAGGCGGGAGTCGCCCGTGTAGCGGTCGAGGAGT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCGCAGGGTGGATGAGGAC # Alternate repeat : GTTGCGAGCCCTCGCAGGGTGGATGAGGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 2 74147-73851 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907215.1 Actinomadura atramentaria DSM 43919 strain SF2197 G339DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 74146 30 86.7 38 ......GC......T....C.......... GACGACCACCTGATGCGGGTGACCACCGTCATCCGCGC 74078 30 93.3 35 ........T.......A............. CCGGTCAGATCGCCCCCTCGGCCCCGGAGGACCCC 74013 30 96.7 38 ..........................T... CTCATGACCAGGCTCCTTCTGGTCGGGCGGCCCTCCGG 73945 30 100.0 35 .............................. GACGCCAGGTCCCGGCCGATCCGCCGCCCGGCCTG 73880 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 95.3 37 GTTGCGAACCCTCGCAGGGTGGATGAGGAC # Left flank : CATACGCGGTGAGCGCGACGAGCGACCGCTGCTATGGCTCGTCCGGGTCACACCGGGCGGGCTGGTGGTGTGCGAGGCCGAGCCGGACGGTCACACGCAGGCGTCCGCGTGGTGGCGGACGTTGACCGGGCGCACCCCGATCGCGGCGAGGCACGATGCGGCGCCCTGACCTGAGTGACGTCCCCGAACTGCTGACGACCGGAGAAGTCGCCCGACTGTTCCGCGTATCGCCGCAGACGGTCGCGCGATGGGCACGCACCGGACAGATCGCCGCCATCGAACTGCCGGGCGGACGAGTGCTCCGATACCCGGCCGCAGACGTCCGGCGACTGCTGGGCACCCTCGGGGATGATCGCTGACCTGGCACGTCCCGACCAGAACAACAAACCCAATCGCTCGACCAGCAGAGGGGTTGGTCCCGCCGAAATGGTTCGGGATCAGCCCCTTACAGGGTCGATGAGGACCGGGGAGCAGACCGGACGCGCCGTCGCCGCCGGACT # Right flank : CCCAGGGTAAAGGCGCAGGCCGTGCTGGGGCTGGCGGGGTCGGCTGGGGTCATTTTTGCAGCGGACCTCCGGTTGTGCAGAAACCCCGGGAGGTTTGCTGCATACGGCGGGTTCGTGTGATGGCGCGGCTGCGTTCCGTGGTGGTGGGCTGGGCGCGGTAGGGCGGTGGAGTTGTGCGGTGGTCTGCGGGTCAGAGGGTGAGCGCGCCGTCTTTGATGCGGCCCGTCAGGCTTCGCCAGGCGTGGGGCGTGCAGGCGAGGCGCGGGCCGTTCGGGTCGGTGCTGTCGCGGACGCCGACCACGCCGGGGAGGTTGGTCGCCACTTCCACGCAGGTGTCGTTGCCCTTTGCGGAGTGGGAGCTGATGCGCCATTCGGCACCGTCGAGCGAGAGTTCAAGCATGGTGGGCCTCCTTGCCGATTCGGGCGATCAAAGTCGCTGATTCGTCTTCTGGCAGGGCCGCGCCGCGGATGCGGTCGAACGTCACCTTACAGCGCTGGAC # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCGCAGGGTGGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 3 77510-77282 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907215.1 Actinomadura atramentaria DSM 43919 strain SF2197 G339DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 77509 30 100.0 36 .............................. GATGCTCCATACGGCTCCATACGAGTCCCCCCACCG 77443 30 100.0 37 .............................. ACGTACTTCGCGGCGGCTTCCTGCACCTGCTGCTCGG 77376 30 96.7 35 ....................A......... CCGGACGTCGGCGGGTACTGGTCGCGGGCGGCGGC 77311 30 96.7 0 ............T................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 98.3 36 GTTGCGAACCCTCGCAGGGCGGATGAGGTC # Left flank : CTTACGAACGCGGTATGCCGAGCCAGCGCCTCCTTGAGCAAGGGCACGGCCACTATCGGAACGCCGAACCCCATCAGCTCGCACAACAAGGCCACCGCGAACGTGTCCGCGATACCGACCGCCCACTTGTTGATCGTGTTGAAGGTCGCCGGGGCGACCACCACCGCATCGGCGGACGGCAACGCGTTCGGCTCGTCCGGCATCCGGTACTCCGAGCGCACACGCTCCCCGGTGAGCTCGGCGAGCAGGTCTGCGTCCACGAAACGCCGACCCAACGGAGTCGTGACCACGACCACCCGCCAGCCCGCGCCCTGCGCGAGTTCAACGAACTCCGTGACCTCACTGGCAGCGGGAGCCGCACACACCACCACGTAGAGAACCCTCTTGCCGTCGCCCCGCACGCCGAAAAGCCTAACCACTGGGACGACTCGGGATGGGGCGCACGTGCAACCGCCTGCGGAGACAATGCGAGGGCGGCGACGAACTGCGCAGCAGGTCTT # Right flank : CCCAGGGTAAAGGCGCAGGCTGACCCGGGCCCGGCGGCGTCGGCTGGCCTCATTTTTGCAGCAGACCTCCGGTTGTGCAGAAACCCCGGGAGGTTCGCTGCAAACGACGGGCTCGTGTGATTGTTCGGCTGCGGTCCGTGTTGGTTCTTCTCGGGCGTCATGAGATGCCGCCGGGCGTCAGGTCGGAGGAGTTGGGCGATGGTCGGAGGGTGAGCGCGCTGGCCTTGATGCGGCCCGTCTGGCTTCGCCGGGCGTGGGGCGTGACGCGAGGCGCTGGCCGTTCGGGTTCATGCCATCGCGGACGCGGACCTTGCCGAAGACTATCGAGCCGCGACCGCTCGAACGGCCGAAGGGGCTTACGAGCAACGGCGGCGGCCTACGTCGTCGGCGTCCTCGCACGGCTGCGCGTGCCGCAGCCCGCAGAGCCGTCTTCGCGGTGAATCGGCTGCGGCCGATAATCAGCCGCCGCGCCTTACGGCAAGGGCCCTGCGCCGTAGCCT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCGCAGGGCGGATGAGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 111788-112079 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907215.1 Actinomadura atramentaria DSM 43919 strain SF2197 G339DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 111788 30 93.3 35 .....A........A............... GTGACGATCATCGACCTGCGGCAGCAGTACCGCCC AA [111793] 111855 30 100.0 36 .............................. AAGTTCTAGGGACCACCCCGTGACCGACTCCACTCC 111921 30 100.0 34 .............................. AGCTGGTCGTCCGCGCCGTCGCTGTCGGCGTACT 111985 30 100.0 35 .............................. CCCCACGTCGTGTCGGCGGTCCGGCAGGGCACCCG 112050 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 98.7 35 GTTGCGAACCCTCGCAGGGTGGATGAGGAC # Left flank : CTGCGCGCCCAGCGCGGCCACCGGGGGACGCCCGCGCGCCGGTGGGCGGAGGCGGCGGGGCCGCCGCGCCGCTCGTCCACCCGGCTCGACCCGCGCCTGCTCGTGCTCACCCCGGGCGGCGGGCTCGCGGCGGCGATGGCCGGGCTCGTCCCCGGCGTCCGCGCCGACCTCGGGGGCGACCCGGAGCCGACCGGCGAGGCCACCCTGTGGCTACTGGACGCCGCCGGACCCGGCGGAGCGTGGGCGTCGGTGGACTACGCCCCCGGACGGACGGAGTTCGAGGTCGAACAGGCAGGCGACCGCGACCTGTGGGCCGAGGCGGAGTCCGCGTTCTTCCAGTGGCTCCGCTGGGGCCGCCCACCACTGCACCGCTTCGGCCTCACCGTCACGCCCACGGGCCAGCACGTCTGGCTGGACGCCCCCGCCAACCCACTCCACCCGCCCCGCTGACCCACCCCGAAAAGCGGCGGCCAATACCCGATCGGCGAGTTGGTTGGGGG # Right flank : CCCTAGGGTAAAGCCGCAGGTCTTGGTGTGGCCAGGGTGGGGTGGGGCGGCGGGGTTTGCAGTGGACCTCCGGTTGTGCAGGAATCCTGGGGGGGTTCGCTGCAAAACGGTCTGCGGGGTGATGGGGCGGTTGCGGTGTGTAGGCGGGGTTCGGTCGGGGTTCATTCTCGTCGGTCGCAGGGGGCGGTGCTACGCGCCCGGTACGGTTCGCCGGGTGTGGCCTGCTTCGGCTGGGTGGGGGTTGGTCAGGTGGTGCGGATTCGTTCGACCAGGTCGCGGAAGTTCGCGCGGGCCAGGAAGAGGTGACCGGCCTCGGGGTTCTTGCTGTCGCGGATGGCTACCTGCGGCGGGGCCGCTGCCAGCTCGACGCAGTGGCCGCCGTTGTCGCCGCTGTGGGTGGACTTGCGCCAGGCGGCCGTGGCCGGGACGAACGCCAGTTCGACGCAGTCACCGCTGTGGCCGCTGTGGGTGGACTTGCGCCAGGTCAGGGCGGTGAATTC # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCGCAGGGTGGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //