Array 1 57946-58522 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRL01000010.1 Salmonella enterica subsp. enterica serovar Oranienburg strain BCW_3977 NODE_10_length_180041_cov_2.27229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57946 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 58007 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 58068 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 58129 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 58190 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 58251 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 58312 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 58373 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 58434 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 58495 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 74659-76520 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRL01000010.1 Salmonella enterica subsp. enterica serovar Oranienburg strain BCW_3977 NODE_10_length_180041_cov_2.27229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 74659 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 74720 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 74781 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 74842 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 74903 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 74964 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 75025 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 75087 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 75148 29 96.6 32 ............................A TCCCAAACAGTGTCGCCGTAACGCTCGGTGAC 75209 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 75270 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 75331 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 75392 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 75453 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 75514 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 75575 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 75636 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 75697 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 75758 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 75819 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 75880 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 75941 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 76002 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 76063 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 76124 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 76185 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 76246 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 76307 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 76368 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 76429 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 76491 29 86.2 0 TAA.........T................ | A [76515] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //