Array 1 163752-162082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQD01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN024777 CFSAN024777_contig0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163751 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 163690 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 163629 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 163568 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 163495 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 163434 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 163373 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 163312 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 163251 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 163190 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163129 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163068 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 163007 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162946 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162885 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 162824 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162763 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162702 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162641 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162538 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162477 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162416 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162355 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162294 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162233 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162172 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162111 29 96.6 0 A............................ | A [162084] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181134-180008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQD01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN024777 CFSAN024777_contig0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181133 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 181072 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 181011 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 180950 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180889 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180828 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180767 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180706 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180645 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180584 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180523 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180462 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180401 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180340 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180279 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 180218 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 180157 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 180096 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 180035 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //