Array 1 228078-227186 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VDNV01000001.1 Streptococcus salivarius strain DE0578 NODE_1_length_564761_cov_254.364630, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    228077	    36	 100.0	    30	....................................	CTCATTAAAGGTAAGTCTATGAAAGTTACA	
    228011	    36	 100.0	    30	....................................	CGCGCTAACGTTTGAACGACCGTAACGATG	
    227945	    36	 100.0	    30	....................................	TGCAAGTCCTTGCCCCATATATGCACCAGC	
    227879	    36	 100.0	    30	....................................	GCCCCGGTGTATAAACTGGTTCGATTGTTT	
    227813	    36	 100.0	    30	....................................	GTGGGGCTGTTTTCTTGCATCGTCTTGATA	
    227747	    36	 100.0	    30	....................................	CGAAGTGTCTGGCGTGCAAATCGTCCGTAC	
    227681	    36	 100.0	    30	....................................	ATACTTTGCGGTCTAAGAATGTTGAAGGCG	
    227615	    36	 100.0	    30	....................................	TTTAGATTCTCGTGCCCTAAAACTTGCGAT	
    227549	    36	 100.0	    29	....................................	AAAAAGCCCGACATAAAGCCGGGGCAGTT 	
    227484	    36	 100.0	    30	....................................	TCTCTTTCTAATTCTTCTTTATCTATCTTT	
    227418	    36	 100.0	    30	....................................	AAGTATTTCTGAAAGCGTGAGAACGTCTCT	
    227352	    36	 100.0	    30	....................................	TGATTTAAGTTTTTGGAAGTCGTCTTGACC	
    227286	    36	 100.0	    29	....................................	TTTGTTGGCGCAATTGACTTTTTCCAAGG 	
    227221	    36	  88.9	     0	T............T....................GT	|                             	
==========	======	======	======	====================================	==============================	==================
        14	    36	  99.2	    30	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	                              	       

# Left flank :   TTGATAGTTTTATTTCAGTGGAAACATATGATAGTTTTTATAAGCAAATTGGTCGACTAGTCAAAAAGTATCCAAACCTAACCTTTATTTTATTTCCAAGTGATCAATGCTATTTAAAGATTGATGAGGAAAATAGTAGGTTTGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTAGAGTTTATGTATGAAAGTGTGGCGAAACACTATCCAAGCAATAATTTTCCAACGAGAGACGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTGTTAACAAAAATGACGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATTTTGAATATCTTAAATCAATTGTTTCATTTTAATTACCGTATAAGATATCCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGAATTGACAATGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG
# Right flank :  TTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACGCGATAAACATAGGGATTGTCAGGCTGACCGACCTCTTTAACCTCAGTCAAATTGAGGATAGGAAGGCTCTGTTTGAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTTACCCAGGTATTATCCTTGAAGGTTTGGTCACTTCCTCTCGTCGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATAACCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGTTCCTTGGTCATCTCCTTCTCATAAGCAGAGGAGGTGAAGTAGGAGCTAGTGTCCGGCTTCAAGTACTGGATGGT

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.91   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//