Array 1 1783592-1782424 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UGPM01000003.1 Mannheimia haemolytica strain NCTC10208, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
   1783591	    32	 100.0	    34	................................	TGATACTTAGGTAGAAGAGTATGGAAACTCTCTT  	
   1783525	    32	 100.0	    34	................................	GTCTGCTTTACCGGTTAGGCGTTGGCGACTGCTT  	
   1783459	    32	 100.0	    36	................................	AGCTATGGCGAAAACTTATATGTAAAACGCTTGCAG	
   1783391	    32	 100.0	    33	................................	CGGCCAGCGGTCGTAGTCAGTCAGAGCAACATA   	
   1783326	    32	 100.0	    36	................................	AGCTATGGCGAAAACTTATATGTAAAACGCTTGCAG	
   1783258	    32	 100.0	    34	................................	GTCCAAGCCTTCTGCCGCCTTGCCAATCCAGTAG  	
   1783192	    32	 100.0	    36	................................	CGTGCAATCTGCACCTCATTACCATCAAAGGTAAGC	
   1783124	    32	 100.0	    34	................................	CCCAAGTGTAGCATAACATCAATAAAAACATCAT  	
   1783058	    32	 100.0	    36	................................	TCCGCAAACCCTAAAATCCATTGTTTTTTGGCTGTG	
   1782990	    32	 100.0	    35	................................	CAGTCCCAAGTTTCGCCGCTTGGGTTAGAGTTGTT 	
   1782923	    32	 100.0	    35	................................	CGTGACGACTACGGGTTGCACGGCGTTCGGTCTGA 	
   1782856	    32	 100.0	    34	................................	AGATGTTTTATTGGTTGGGGGAAACAGGAAGAAG  	
   1782790	    32	 100.0	    36	................................	ATTTTCAGCCAAAAGCCTAAACTAACCTTCAAGCAC	
   1782722	    32	 100.0	    35	................................	CAGTCCTCGTGACGGTGGAGTAAGGCAAACTGTGA 	
   1782655	    32	 100.0	    35	................................	CGAAAGGTGACTTACAGCGTCTTCGATGAACCATT 	
   1782588	    32	 100.0	    35	................................	CATCACTTCACCTCCTGCTCAAACGGCTTGATAAT 	
   1782521	    32	  90.6	    34	...........T......T....T........	TTACAAGATGCTGAAGTAGTTAAATCAATAGCAC  	
   1782455	    32	  71.9	     0	.......T..T...A.C.A.A.AT.......T	|                                   	
==========	======	======	======	================================	====================================	==================
        18	    32	  97.9	    35	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                    	       

# Left flank :   TGAGGAATTGGCAACTATGTTGATGTTGATTACCTACGACATTTCATTTGATGACCCAGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTACGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACCCCCGCTCAGTGGGTAACACTGAAAAATAAATTATTAGCAACTTATAACCCTGATTGTGATAGTTTGCGCTTTTACCACTTAGGCAGTAAATGGCGTAATAAAGTCGAACACCACGGTGCAAAACCGTCAGTGGATATTTTTAAAGATACGTTAATTTTATAAATCGCTAACCTGTTGTTCTCATAAAAATGCTGGAAGGTTAGCGAATATACATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAAGTACAGTATATTGGCGATATGCTATACTTTTTCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTGGTAGGGA
# Right flank :  ATCAATGGTAAATTTGTATGTTGCTAATTAGACTGATTACATCTGCTATGTATCATAGTAATGAAGAAAATATTCTATGTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAATGAAAAGAAGCAATTTCTGGTTAAAGATATTTCTGAATTGGTGCGTGAAGGGCAAGATATAGTTG

# Questionable array : NO	 Score: 9.16
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,-1.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [12-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//