Array 1 72772-73395 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PPQH01000052.1 Staphylococcus intermedius NCTC 11048 0e0703f8-94f4-4870-9a0b-098e61fd3cd2_c53, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     72772	    36	 100.0	    29	....................................	ACGGCTACAGTTATGACGTCTTTATTAAA 	
     72837	    36	 100.0	    29	....................................	TCAACTCCCCTATTCATTTGAGCGATGTT 	
     72902	    36	 100.0	    28	....................................	TCTTTGTTGTATGTAATTTCTAATTTCC  	
     72966	    36	 100.0	    30	....................................	ATCAAACTAAAATTTTCAAACGGTACTACA	
     73032	    36	 100.0	    30	....................................	CTTGTTGCGTCTTTTCATTATTTACTCGCA	
     73098	    36	 100.0	    30	....................................	AAATTGATGAGGACGTTCTTAAAGAATCTA	
     73164	    36	 100.0	    29	....................................	TCTTTATTGTCGCTATGGTTTATGCACTT 	
     73229	    36	 100.0	    30	....................................	TAAGAAGCTTATGAAGCTTTACAAGGTGTT	
     73295	    36	 100.0	    30	....................................	TTTAGTAGAAGTAAACGAAGCATATACGTC	
     73361	    35	  86.1	     0	.......................T...T.-.G.C..	|                             	
==========	======	======	======	====================================	==============================	==================
        10	    36	  98.6	    30	GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	                              	       

# Left flank :   TCACTCAACAAAAGAAAACATTTTGATTGTATTATTTCCGGAGTCTCACCTCGGTATTCACGATATTAAAGTATTTATGCAACTTTTAAAGAAGTATCGTTTCACAACGATCGTCTTCACCAATCATCCTTCTATCATCATAAATGAAGAAAACATATTTCTTTGTAAAAGTAATAAAGCGTGTCATGACATAGAAAAAATAAAGGAAGAATTATCGTTATTAATTCCAGAAGAAATGGTAAGTCATCAATTGACTAATATGATTGCATATCACGAATTTTTAGGTGAAAACCTTTCTGAGTTTGAAAGATATTTTAAGTTTATAAACCATTACAATTAAGTTATACTTAATTCAATGATTGACAAGTAAGTAATGACTATGTGACTTACTTTGCGATTGAGTTGGGTAAGACGATTCCTCGTTTTTTATGTTTTACTACTTCTAATAGTGTGAAGCCTCAATTCTCTCCAGAATACAGTTAAGAATTTTGAGATTTGAG
# Right flank :  CCCCACTTTTAAATCAATTACGAACTATATTTACTGCCCTCACTATCTTTTAACTTCAATATAAAGGTATGGAGGGGCATTTTTATTTACGCGAAATGTCCACCAACGTCCCTTTTCCATCTCCATGTTATAATAGCCACAAATGCTCATTAAAACTCAAAAGAAGGTAGGGGAAATCTATGGAAGCAATTATTGCACGACAACCGTTCCAATTATCCGAGGGACAACAGTTTGAAAAGGTCGCACGTGATATACCTACACCAGAGGGACACGATGTTTTGGTAAAAGTCCATGTGACAGGGGTGAACCCGGTCGATACGAAAACGCGTCAAGCGCCTCTCAATGCGAAGGAACGTGTACTTGGCTATGATGCAGCAGGCGTAGTCGAAGCGGTTGGTGATGAAGTTACGGATTTCAAACCAGGTGACCGTGTGTACTATTCCGGCTCCAATCAACGTGATGGTTCCAATCAAACGTATCAGCTCGTAAATGAAAATTAT

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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