Array 1 49-2827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDBS01000231.1 Aeromonas caviae strain CECT 4221, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 49 29 89.7 32 ................G........C..T CTAACGTGCCTGCATTGAGGGAGACGGCGCGC 110 29 100.0 32 ............................. ATCTGGAGGCCCTGGATCATGACTGAAACGAT 171 29 100.0 32 ............................. ATCGCCCATTTCACTCTGTACACGGTCAATCT 232 29 100.0 32 ............................. AGTAACCGTCCCATCTTCTTCGGCCTCGGTAA 293 29 100.0 32 ............................. AACTCGCCCCTGCGTTCGACATACCCAACGCC 354 29 100.0 32 ............................. CTGGTCTATCTCGGCCTTGATGGCCGGGGTGA 415 29 100.0 32 ............................. GTTATCGAGACGGCCCCACCTAGACGGGTTGC 476 29 100.0 32 ............................. TTTGACGGCCGAATTGGTAACGCCTGTAATGG 537 29 100.0 32 ............................. CGTTTTGTGGAGAGCCTTTACCTTCACAGAGC 598 29 100.0 32 ............................. CTCGTTGGCACCTACTCCACTATCGGGGCTCT 659 29 100.0 36 ............................. ATGAACAACTTCACAGCGCTGATGTCGTATGACTGT 724 29 100.0 32 ............................. GATGCTGACTCCCTCGCTGACTGTTATCGAAA 785 29 100.0 32 ............................. ATGGCGAATAGCACCCGCAAATGCAAAAAATG 846 29 100.0 32 ............................. CCAGATTTCTTGATACGCTTCACCATAGATAA 907 29 100.0 32 ............................. CATGATTGCCGTGTCGCCTTCGGTGCCGTCGC 968 29 100.0 32 ............................. AGTAAAACTGATCTGAAGCGTGTCTTGCCACA 1029 29 100.0 32 ............................. ATGGAATGGCATAGGCGCGGCAATGAGGCCGA 1090 29 100.0 32 ............................. ACGGCTGACTATGTTGACCTGCTGCCAACCAA 1151 29 100.0 32 ............................. TGTTACCGATTTATTCGGGTTTGATCCTGAAT 1212 29 100.0 32 ............................. GTTCATTATATCGGAGTCGCTCGACGTTACGG 1273 29 100.0 32 ............................. CGATACCGCCGCGAGGACTATCAAGCAATCGA 1334 29 100.0 32 ............................. ATAGCAGCCAACAGCTCAACGCTGAATGTGAC 1395 29 100.0 32 ............................. CATTTATGATTGCTTATGTTTAAACTCCGCAC 1456 29 100.0 32 ............................. CCGAACAAGCCGCGCTCTGATCGCGGCTACCT 1517 29 100.0 32 ............................. CGACCGTTCCCGCAGTGGCCGCTGCCTCTCTG 1578 29 100.0 32 ............................. TTGCGTTGACCCCAGTCGTTCGCCTCATGGAT 1639 29 100.0 32 ............................. ATGTCTGCGCTCCACCTGTTGCCAAGAGACGC 1700 29 100.0 32 ............................. GTCACAACGTCTACGGGCCAGACAATGCTGCT 1761 29 100.0 33 ............................. GAAAAACACGGCCCAGCCCTTGCGGGCGTCTGC 1823 29 100.0 32 ............................. TCCACCTTGGCCCCGCTCAAGGCATCAAGCAC 1884 29 100.0 32 ............................. GGTTAGCGATCACGCGGGCTTTCATGGGGACG 1945 29 96.6 32 ..........A.................. GTGATCCGCCCCTGCTTGGCGCGACCCTCAAA 2006 29 100.0 32 ............................. ACAGGATGGAGCAGACCATCGAGCAGATCCAG 2067 29 100.0 32 ............................. CGGTGGATTTGCCATCTGTCCGCCGACCGACC 2128 29 100.0 32 ............................. GCCATATGCGTATTCGTTATCACCTCCATTTT 2189 29 100.0 32 ............................. TAGGTCACACGTTCTTCTACCACAAACCCAAC 2250 29 100.0 33 ............................. CTATGAGCTTTGTAGGTGATGCAATAGGGAGTG 2312 29 100.0 32 ............................. ACGTATTCGCCAAGGTTCGCGTCCCAGACCTT 2373 29 96.6 32 ............C................ CCGTGAGTAAAGCGGTCACTGTAGAATGAGAA 2434 29 96.6 32 ............C................ CAACTTGATGGTGTTGCAGTTCAGACTTGATG 2495 29 96.6 32 ............C................ TGATCACGACCTACACATCCCGTGACGCCGAG 2556 29 96.6 32 ............C................ TTGTCCGGGCCATAGAAGGTGTGCCCCTTCTG 2617 29 96.6 31 ............C................ AGGATTGAGCGACCCAAAACAGTGTCGTTGC 2677 29 96.6 32 ............C................ CCTGCTGTCGTGGCGGGTGAAGTCGCCGCCGC 2738 29 82.8 32 ........T.T.CT.............T. TGGAACCAGACGTTCAGGTCCAGCATCAAGGT 2799 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 46 29 98.9 32 CTGTTCCCCGCGTCCGCGGGGATGAACCG # Left flank : CCGCGGGGATGAACCGGATGCCAACGACATGGAGGCAACCAAGCGGCGC # Right flank : GAATCTCTTCGGCATGGCATGCTCTCGATTACGTGCTAGGGTAATCGTTCTGGCTGTCATTGTTTGATCAGCAGCGAGAGCTGATAGCGGACATTTTCTAACAGAGCAGCTTTAATTTGGCGCGTCGGGTTTCGATTTTGGGTGTTATCTGATCGCGTGTGTAATCACCCGTAACGAGACAAGTGAATTTTTTGACGAGCATTGAGCGGCGGATTTACACGCCTGCGGCTTTCCCACTCAAATCACCATGATCATTACCAACCCTAGACAGGACGTGGCTTTGCTAGTCGCCAGCCTTCTAGGGATAGGTGATCAGGTAAGGCTGATCTGATCAGATAAAGTGATCAGATCAGGCAACGCTGATCTGATTCCCCGATCACTTCCGGTGATCACTTCTCAGATTTTTTCCAGATACCAACCCCATGGCTCGTTTTGAAAACCTGCTTGGCATGAGATGAACTGCCAGCCAAGGTGGTACAGGTCATTATTCAAACGCCAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGTCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1913-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDBS01000324.1 Aeromonas caviae strain CECT 4221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1912 29 100.0 32 ............................. CGGCATTCCTCCGAGGGGACCGCGACGCCCTG 1851 29 100.0 32 ............................. CCCTGGCCCTGCTGGAGCGGTTCCACGCCGTC 1790 29 100.0 32 ............................. GTCGCCCTGATCGACTACCTGGACAATATCGC 1729 29 100.0 32 ............................. TGATCAGCCGACACCGGACGCGGTCCGGGGCC 1668 29 100.0 33 ............................. CCGCGATAGATTGCGCCATCGCCGACGCTCTGA 1606 29 100.0 32 ............................. GGCGCCAGCCGCTACTTGATGCGGGACGAACG 1545 29 100.0 32 ............................. TGTTACGGGGACCGCGACACCGTGGACCTAAA 1484 29 100.0 32 ............................. CAGGAAGGGATCCCGGCGGTCACAAAATGGGA 1423 29 100.0 32 ............................. TATTCGGTGTGGTAGGTGATCAGCTGCTTGAT 1362 29 100.0 32 ............................. GCAACGAGTACAGCATCATGTACGACGGCCAG 1301 29 100.0 32 ............................. GAGCTTCGCAGCACGCTGGCCGCCCAGCAAGG 1240 29 100.0 32 ............................. GTAGACAGGTTGTCCGGCGACGTTACCAAGGT 1179 29 100.0 32 ............................. CAGCAGGCAGGCAGGGCGGCGGCCATCTTGTT 1118 29 100.0 32 ............................. GGTTTGCTCCCAGCCTATGAGCCGGAATCTTA 1057 29 100.0 32 ............................. TTGTAGGCGGGCTTGAGCATGTCCGGCAGCGG 996 29 100.0 32 ............................. GTCAGGTGTTCTTTCCAGTTGCCATAGTAGCG 935 29 100.0 32 ............................. GCTCTCAAGTCTATGTTGAGGGCAAACTGGAA 874 29 100.0 33 ............................. CCTTGTGCAGGCGATCACGGCTGGCAATGATCG 812 29 100.0 33 ............................. GAGGCACTGGTGGCCTGTGCCGCCGAATATCGC 750 29 100.0 33 ............................. CTCGGTTCGTGCGATGGTTGCTGCTCGGCTTGC 688 29 100.0 32 ............................. GCTGAATACGCAGGCCGCCTTTCCTTGGTCTA 627 29 100.0 32 ............................. ATTACATGTCTCGCGCCAAAATTGACAAATTC 566 29 100.0 32 ............................. GCCCATCACGGGCCTTTTCTTATCTGTACCTA 505 29 100.0 32 ............................. GATGCCAACGACATGGAGGCAATCAAGCGGCG 444 29 100.0 32 ............................. CTAACTTTCCTGCATTGATGGAGATGGCCCGC 383 29 100.0 32 ............................. GTTGACGCAGACAACATCACCTTTAGCCTAGA 322 29 100.0 32 ............................. CGGTTGGCAGCGTCAGGTTTCAGATGTGGAAA 261 29 100.0 32 ............................. CGCAACGACTGGCTCTGCTCGAATGACCTTAC 200 29 100.0 32 ............................. AAATCAGACTCGCTCAATCTCGTTTCCGTTGG 139 29 100.0 32 ............................. TTATATGCCTTTGTCATGCGGCCCTTGGCGTT 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 100.0 32 CTGTTCCCCGCGTCCGCGGGGATGAACCG # Left flank : CCGCTTATCGAGGAGGTGCTCTCGGCCGGGGGCATCACCCCGCCAGACGCCCCTGCAGATGCCCAGCCGCCCGCCATCCCCGAACCCGTCGGCATGGGGGATGCCGGTCACAGGAGTCAGTGATGAGCATGCTGGTGGTGATCACCGAGGATGTGCCGCCGCGCCTGCGCGGCCGGCTCGCGGTCTGGTTACTCGAGGTGCGTGCCGGTGTCTATGTGGGAGAGGTGTCGCGCCGGGTGCGAGAGATGATCTGGCAGCAGTGCGAGGCTTTGGTGGAGCAGGGCAATATCGTGATGGCCTGGCCCGCTAATAACGATTCTGGTTTTGACTTTCAAACCCTGGGGACCAATCGCAGGGTGCCGGTGGACCTCGATGGTTGCCGATTGGTCTCTTTTCTACCCATTGAAAATCAATAGCTTAGCGTTCATTAACAATCTGGACTAGTCGGTGGCTTTTTCATGGTTGGAAAAAGCCATAAAAATCAATAGCATATGTTAAGT # Right flank : GGTCTAGCGCCAGCGACTCCATGCGACTGAAACCTGTTCCCCGCGTCCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGTCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //