Array 1 1251-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000107.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1250 29 100.0 37 ............................. AAAAAAACAAGGGCACATTAAAAACATAATAAAATCA 1184 29 100.0 35 ............................. GTATGCGGAAACACAATAAACAGAGATCTAAATTC 1120 29 100.0 36 ............................. TCGCTCTCTATTCGTGTTGATTCTTTCCAAAGCTCT 1055 29 100.0 37 ............................. ACTACATAAGAATATGGGACAATATTAACCCATCCAC 989 29 100.0 36 ............................. AATTTTCCTAACAACTCGTCCGATAGCTTTATAACT 924 29 100.0 36 ............................. TCTAATCCTACCATCTTTATCTTTGATGCATACGAA 859 29 100.0 37 ............................. GGTATAAAAGGAAGTGTAAGAATACACTCCTTTAATG 793 29 100.0 38 ............................. GAACCTGAGAAGGAGCCACCGAAGCCTAAGCTGAACCA 726 29 100.0 36 ............................. TAGAACACATCTATTACGAAGACTATGAAGTTGAAG 661 29 100.0 36 ............................. GCCATTGGCTGGCTGTTTGTTAAATTAATAATCTTT 596 29 100.0 37 ............................. ACGATGACGTGTTTTCTATGGGGTACACCCTTTCTTC 530 29 100.0 36 ............................. AGACGACTTAAATGAAGTTACACTTAAATCTCTCAC 465 29 100.0 36 ............................. TTTAAGGTAAGGATAAATATTAAATGCTTCAAAGAG 400 29 100.0 36 ............................. TTGGCATTTATAACCTTTATTCTATTTTTAACAAAT 335 29 100.0 37 ............................. ATGCTTGCTCCATCTCTTGTCTCAAAGCATTAGCAAT 269 29 100.0 37 ............................. TATAATGTATTATTTTCATCTTAATGTCATAGGGGGA 203 29 100.0 36 ............................. TTAAATTCAGATACTCTTGTAGTAAGGTAGAACCAA 138 29 100.0 36 ............................. AATAAAAAGTTTGTCAAGAAAGTAGCAGGGTTTTTA 73 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 19 29 100.0 36 GTTACATCTGAACCGTGTGGGTTAGAAAG # Left flank : AGACGTTAGAGATTGGTTTATCAATATCTTAGTGATTTTTATCTGATTGTGTGATAGCTTAGTGAGATGATTTAATAGTCAGTGAAGCTAAGGTATTGGTAATGTGATTTTATTTTTTGATGTTTGGTTTGAGTTTGTGTAGTAATGGTTTGAAAGGGATTTTTTGAAGAGTAGCTATAAGTATTTGTTGAATAAAACTTTTTGATTTTAAAATTTTAAGCATTCAAGTTTTTGAAATTTAGGAGTTTTTTATTTTAAAATTTTTTAAGATCGGGAAGTTAAGTAGTGATATTTTCCGCCCCTTTCTGAGTTTGTGGTTTTCAGCAGTTGGCTTGTTATGGGAAGTTAAAGGATAAAATATAATAATATATTTTCTGTATATCGAGGTTTGCTGCAAAAAACTTCAACTTGCGGATTTTTTAAAAATATGTTATAATGTTTTATACATTGGCAATTGAATAAGACTTTTACGAATTTATTTTTTAGTTAAAAGTTAACGG # Right flank : GTATCTACTTTCCTAACTGCTTGCCCGATTTCACTTTTGTTACAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCTGAACCGTGTGGGTTAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 3982-2827 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000120.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_209, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 3981 28 100.0 38 ............................ CGTCACAGAACCTCTAAAAATCTTTGAAGTGGAAGAAC 3915 28 100.0 36 ............................ CGTATATATACAAGGATATTGTCCCAAAGGACAAGT 3851 28 100.0 37 ............................ CTCAAAATCTAAATTTCCCACCACCACTCTCGTCGAA 3786 28 100.0 38 ............................ CCACTATCTCTACATAAGATGGATAGTCCGCATAGTCT 3720 28 100.0 37 ............................ CAGTCTTGCCCCGACTTGGTTTTCTAACTTCATTGTT 3655 28 100.0 38 ............................ CCTATAATGATACCTAATTTTAAAGTCATCACTATCTT 3589 28 100.0 38 ............................ CTTCTACTTGTAAAGCATCAAGCTTCCACTTTTCTCTT 3523 28 100.0 40 ............................ CCTATTTCAAAATCTTGCTTATCATAATTAATATCCAATT 3455 28 100.0 38 ............................ CTCCATCGGAACTTTCGGACGATTTTGATTATGATAAA 3389 28 100.0 38 ............................ CGTAAATTAATATATATCTAACAAGTAAAACATCTGTC 3323 28 100.0 41 ............................ CAAAATCAAAAACAAGAGTAAAATCTCTGAACAACGGGTAC 3254 28 100.0 36 ............................ CTTAAGTACCTCAACATTTAAAACCTCAAAATCATC 3190 28 100.0 43 ............................ CTTCAGTATATCGCAATAGATGGCTTTATATTGCCAGAAAAAA 3119 28 100.0 40 ............................ ACGACAAAATCTCTTTTACTTCGTCTAAGTTAATCTCCTC 3051 28 100.0 37 ............................ GATGGTATATCCATATTTGGATATTCTTCTAATATTT 2986 28 100.0 38 ............................ GCTACATAAAATTCATTCTCTATTATCTCTATCCCATG 2920 28 100.0 38 ............................ ATAAGAAATGGACTTCTGCTCTCCATTGCCCGTCTTTG 2854 28 85.7 0 ...AT............A.......A.. | ========== ====== ====== ====== ============================ =========================================== ================== 18 28 99.2 38 GTTTGTAGCCTACCTATGAGGAATTGAA # Left flank : AGACGTTAAAGATTGGTTTATTAATATCTTAGCTATTTTTGTTTGATTGTTTGTTAGCTTGGTGAGATGATTTAGCAGTCAGCAAAGCTAAGGTATTGGTAATATGATTTTATTTTTTGATGTTTGATTTGAGCTTGTATAATGATGGTTTGAAAGGGATTTTTTGAAGAGTAATTATAAGTACTTTTTGAATTAAACTTTTTGATTTTAGATTTTTTAGCTTTTAAATTTTTGAAAATTTGAAGTTTTTTATTTTAAAATATTTTGAGATCGGCAAGTTAAAGAGTGATATTTGCAGCGGGCTTCTGAGTTTGGGGTTTTTGGCAGTTGGCTTGTGATGGGAAGCAAAAGGATAAAATATAATAATATATTTTCTGTATATCGAGGTTTGCTGCAAAAAACTTCAACTTGCGGAATTTTTAAAAGTTTGGTATAATGTTCTACACATTGGCAAATGAATAAGATTTTTACGAATTTATTTTTGAGTTAAAAGTTAACGG # Right flank : ACAGCAAGACACTAAAAATTAGCATCTCAAAGATTTCTAACATCTATCTATCAAAAGAAAAAAATCCCTAAAAATGTCCCAAACCATTTATTTAAAATCGAGAAAGAATAGAAAATCTTCATGAAAAACAACTTTAAATCTTGTAAAAATCCCTAATTTCTCATTCAAAAGATTTTCACAAAACAGTATGACTAATACCTGAGACTGCTTGCAAAAATCCATATCGTCATTCTGAGCGAAGCGAAGAATCTCATGTTTCTCTTTTCAAGTCAAAAAATCAAAAGATGAGATCCTTCGGCCTTCGGCCTCAGGATGACACAGAAAGGTAAGCTTACAAAAATTTTGGAACATCCTTGACTAATACCTTTACTTTAAGAATGCTATAATAATATGCTATCTAAAAACACTTAGGAGTAAGAAATGCTTGGAGATATTCTATTAAAGTATTGGAAAATCATACTTGGAGTTGGAATTGTTTTAGCTGTTGGAGGTTTATTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATGAGGAATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1961-2954 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000106.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================== ================== 1961 29 100.0 36 ............................. ATAACTCTGCAAGCATCTTGTCATTCTTTGCTTTAA 2026 29 100.0 37 ............................. AAGTCTGCTTGCTCCATTGGTAATACTTGCTCTGGCA 2092 29 100.0 36 ............................. GTTGATAAAGCATCAGAAGTTCCGCCTGCGTTATTG 2157 29 100.0 38 ............................. TTACAACTTTTTAAACCACTATTAACAAGGTTCGAAAA 2224 29 100.0 37 ............................. GAAAACTCTTTCTTAATCACAGGTAAGCTGGTGCATC 2290 29 100.0 36 ............................. GATTTTTCAAAGGATTTTTAAATGTAATTGTTAAGA 2355 29 100.0 36 ............................. TTACTTGGATCCTCTTCACCTAATTCCAATATTCCT 2420 29 100.0 38 ............................. CAGTCAAGCTCTGGGTATATTTTAGTAAGGAGGTTAGC 2487 29 100.0 36 ............................. TTTTACCTACGATAGTATTACCGTGTATAATAAAAG 2552 29 100.0 36 ............................. ATATGTATGTAATACCTGCATTCATGGACGAAGTGG 2617 29 100.0 37 ............................. TATTAATTTTCTGGCAAAATATCATCTTGCTACTAAA 2683 29 100.0 36 ............................. GCGTTCTTCATATTCATTGTTTAATTAAATTCCCTA 2748 29 100.0 36 ............................. GATTTATCTATAGAAGAAATTACTAAACTTATTTCA 2813 29 93.1 83 ................A........T... AGGTGAAACGTGAGACGTGAGATGTAAGACGGTTTTAAATTCTTTTTACGTTTCACGTTTCACGCTTCACTTCTCACGTTTGA T [2837] 2926 29 82.8 0 ...C..........T...T.....T.G.. | ========== ====== ====== ====== ============================= =================================================================================== ================== 15 29 98.4 40 GTTACATCTGAACCGTGTGGGTTAGAAAG # Left flank : GACGTTAGAGATTGGTTTATCAATAATTTAGTGATTTTTAATTGACTGCTTGATGGTTTGGCGAGATGATTTATAAGTCAGTGAAGCTAAGGTATTGGTACTGTGATTTTATTTTTTGATGTTTGATTTAAGCTTGTGTAGTGATGGTTTGAAAGGGATTTTTTGAAAAGTGAATGTAAGTATTTGTTAAATAGGATTTTTTGATTTTGAATTTTTTAGCTTTTAAATTTTTGAAAATTTGCAATTTTTTATTTTAAAATTTTTTCAGATCGGGAAATTAAGGAGTGATATTTTCCGCCCCTTTCTGAGTTTAGGGTTTTCAGCAGTTGGCTTGTAGTGGGAAGCAAAAGGATAAAATATAATAATATATTTTCTGTATATCGAGGTTTGCGGAAAAAAAACTTCAACTTGCAGGTTTTTTAAAAGTTTGGTATAATGGTTATCAGAATATTGATAGAGTAAGCTATAAGCGATTTTATTTTTGAGTAAAAATTTAGCGG # Right flank : GCTCAAGTACTTATTTTCACATCTTTTATTACTTTTTTATCTCACATCCAAAAAATCCCCATCAACTTACAAAAATTGAAAATTCTCGTATAAAGCATTTATTGTATAATAAAGATGCAGGATTTCTTAATACTCAGAAAGGAGCTATTTCTTGTTTAACTTTGATAAAGCTTATTTTGAAAAAGTAATGTATCAACATTTAGATAGTAATGTTAATTTCATACTTCAAGTAGGTAAATACATTATAGACAGCGGTGGCAAGAGAGTTAGACCCTATCTTGTTTTGAAATTTTCTAAAATAATGAAAAATAAAAATGAAGAAAAAGACTATATCTTGGCAGCTGCTTTAGAATATCTTCATACAGCATCTCTTCTTCATGACGATGTTGTAGATGGCTCACAACTAAGACGTGGAAAGCCTACAGCTAATAGAATTTTTGGAAATGATACAACCGTTTTAACCGGTGATTATATGTATGCCAACGCACTTTATCTCTTTT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCTGAACCGTGTGGGTTAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 6924-5781 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000084.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 6923 29 100.0 36 ............................. TAATTGAATGAAATCATTAAAGTGCAGATCAATTTC 6858 29 100.0 36 ............................. CGAAAGCTTTCGAGAGCTACTTTGTTTTTAGAAGAG 6793 29 100.0 36 ............................. TATTCAAGATTTGGATTTACAGCTAAGTTAATACTT 6728 29 100.0 37 ............................. TGCAATTTTTTAACTCCTTTCATAAAAACACCTCCTC 6662 29 100.0 36 ............................. ATTGTATTATATCATAAATTTATTGTTTTGTCAATA 6597 29 100.0 38 ............................. TACAGATTACGCAGAAATAGTTCAAAACGACCTTTTTA 6530 29 100.0 36 ............................. GCATATAAATTTGATGCTAAAGTCGTTATCTCTTTG 6465 29 100.0 37 ............................. GAAGCAGAACCAGAAGCAGAACCAGAAAACTGAGAAG 6399 29 100.0 36 ............................. TTAGCAATTGATTACTTGAAAAATTATTTTGAAAAT 6334 29 100.0 36 ............................. TCAGATATCCTTTCTTTAGGAAGCTTTATTTTAATC 6269 29 100.0 36 ............................. CTAGAATATAAATTTTCTCAACCTCGTCCATGATAG 6204 29 100.0 39 ............................. TAAAGTATATTGCAGAGAGAACTTTAAGCGATGATGAGA 6136 29 100.0 37 ............................. CGATAAAAGTCGGATTACTCCAAATGCAGTATCCATA 6070 29 100.0 36 ............................. GAGAACGCTTAGAACTCTATCTGCCTACCTATCTAC 6005 29 100.0 37 ............................. ATTCTTTCGATCGTATTTCTCTTAGTAAAAGAAAATA 5939 29 100.0 36 ............................. TATTCAAGATTTGGATTTACAGCTAAGTTAATACTT 5874 29 96.6 36 ........................G.... TGAAAAAGCACTTGAAAACTTTAAAAAAGCAGAAGA 5809 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ======================================= ================== 18 29 99.6 37 GTTCCATCTGAACCGTGTGGGTTATAAAG # Left flank : TTTATTTT # Right flank : AAGCAAACTCTCTTGAAGATATAGAGCAATAATAAAAAAACAAAATTAAAAATAACAAAAGTAAAAATTTATAATAGTAAAATAAATAAGAATTCTTACAAAAAAGGGGGCAATAAATGAATTTAGCATTACTGTTAATCTTAGCCGTCATAGTAATAGGCTTCATCTTAACCTACAACACTGTTATCTCTAAGAAAAACAACGTAGATAACGCACTTGGAGCAATTGACGCAGAACTTAAAAAAAGAAGAGACTTGATACCAAATCTTGTAGAAAGCGTAAAAGCCTATATGCAGTATGAAAAAGACCTATTAGAAAAAATAACAAGACTTCGTGAATCAGCAGAAAAAATTGAAAACCCGGAAAAAAGACTACAAATAGAACAAGAGCTTTCGAAAGCTTTACAATCACTTAAAGTAAGATTTGAAAATTATCCAGACCTTAAAGCGAACAGTAGCTTTTTACAACTCCAAGCAACACTAACAGATGTTGAAGAATCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCATCTGAACCGTGTGGGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 6601-3887 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000092.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_180, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 6600 29 96.6 36 ........................G.... ACGGAGAAGAATGGAAGCCAGTAAAAGACAGCTATC 6535 29 96.6 37 ........................G.... TCTGCTTTAGTGGTAGCTATAATAACAGGGATACTGC 6469 29 96.6 36 ........................G.... CCTACAGTTATGTCCCAAAAACCATTATGATACTTA 6404 29 96.6 37 ........................G.... TAATTTCTACGATATAGCTTTTTGAGTATAATACATT 6338 29 96.6 37 ........................G.... TTGGTTGATATTTTTAAATCTTCCTCAATGGTTTTTG 6272 29 96.6 36 ........................G.... CTTAAATGAATGTTGCCAATCTTTTCTAAATATTTC 6207 29 96.6 37 ........................G.... AAAGGCAGTCGCATCTTTACACCCAAACTTTACCCTG 6141 29 96.6 37 ........................G.... GCTTCAAGTAGATTTAGGTTGGATATTGTCTTAATAA 6075 29 96.6 37 ........................G.... GATTTTCTTAAAGCAGCAATTAATGTGCTAATCGTAT 6009 29 96.6 36 ........................G.... ATTCTTCTGCTAGTTTTAGGCTTTCTTCAAAGAACG 5944 29 96.6 37 ........................G.... TGTTTATTAATTTGATAACCACATTGTCGCTACATAT 5878 29 96.6 36 ........................G.... TTCCTTCCAAAAATAATATATCTCAGAAGAACCCGA 5813 29 96.6 36 ........................G.... TTTGTACTTAGTATAGATTTCTGATCTCCAGATCTG 5748 29 96.6 36 ........................G.... GAAAGTTTGTATTTAACAAGTTCTCAATATACCAGA 5683 29 96.6 36 ........................G.... TGTTGTTCCATTCTTTTAACACAATTACAGCAAGAA 5618 29 100.0 35 ............................. TGCTCTACTGCATCATAGATTGTTAATTTTTGTCT 5554 29 100.0 37 ............................. TCAATAGCACGCAATACAGCGAATAAAGAAACAACGA 5488 29 100.0 36 ............................. CCAATAACTGCCTCGCCAAACGAGTTGGTTGAGTGG 5423 29 100.0 37 ............................. AATGAAATAGTGTGGCTCAAAGAATTTCACTGCTTCA 5357 29 100.0 36 ............................. TTCAAACAACTCAATTTTATCTACAAGGTTCTTTCT 5292 29 100.0 36 ............................. CGTTATTTTCTTCAACTACTAAAGAGTCTGTAAATA 5227 29 100.0 37 ............................. TCTCTCTCGCTAATAATGTTCTCATCGCACGCTACCT 5161 29 100.0 36 ............................. TTTACTATCCTATGCTTGCTTATCTTGTCTATCCCT 5096 29 100.0 37 ............................. TCTTTATCTTTAGGTGTTGATTCATCAAGAATGATAT 5030 29 100.0 36 ............................. TTGCAATAGAAGGAGGCGTTGTTAAGCTAAAAGAAA 4965 29 100.0 37 ............................. AATTGTAAAATGACTTTCTTGAGCAGAAAATTTAATA 4899 29 100.0 36 ............................. GTATAATAGTTTTGTCTGCTCTCTTCCACATAAACA 4834 28 96.6 37 .................-........... AGTTTACTAACGAACTCTATAGCTGGTCTACTTAACT 4769 29 100.0 36 ............................. TTGACAGCCTGCTTCGGCGTGATAAAACGCAAGCGT 4704 29 100.0 36 ............................. GAAAACTTGCCAGACTACAAACCATTCTTAACTAAT 4639 29 100.0 37 ............................. CTTACTCACATCTCACCTCTCACATCTCACGTTCTTA 4573 29 100.0 36 ............................. TTAAGGATTAAAAAGAGATAATAGATTTTTGTTCCG 4508 29 100.0 37 ............................. TGTCAGTTTTTACGAATTTTCTTGCTACCCACAAAAT 4442 29 100.0 38 ............................. CTTCTTTTTTGTTTTGTGCTTTCTGGTTCGCAGTAGTA 4375 29 100.0 36 ............................. ACGAGTTAATTGAAGTGAGTGAAGGAGAGCTCACTG 4310 29 100.0 36 ............................. TGTAATGTAGAGAAGGAAGGTGTGGTGTTAGTATCT 4245 29 100.0 37 ............................. TTGTATAGAGTTCCCCTCTGTATAGACAAATATTCCA 4179 29 100.0 36 ............................. TCGTTTAATCCTCCTAATTAGTTTTATTTCCCACAC 4114 29 96.6 37 ........................G.... CGGTAAACGGGGAGAGAAAAGTCAGTGTGAGTAGATG 4048 29 96.6 37 ........................G.... GCTTCTTTCCATATTCTTGTCAAAATATCTGACCTTA 3982 29 100.0 36 ............................. GTTTCTACAGCTTTCAAAATAAATCTTTCTATTGCA 3917 29 96.6 0 ............................A | CG [3890] ========== ====== ====== ====== ============================= ====================================== ================== 42 29 98.5 36 GTTACATCTGAACCGTGTGGGTTATAAAG # Left flank : TTAATA # Right flank : TGCAAAGTGAGAAGTTAGATATGATACGTTTCATAATCGTTAATAGTTTAAATAACGTTTCAAATGTATCTTACCTTCACGCTACTAAAGTCCAATCTTAACCGCCAGGTTAGAAAGTTCTTAAATAAGTCAAAATATTTATATATTGATAATCAGATAGCCAATCTCGCTCATTACATATCTTATCCTGTTATATAATATTTACTATGGAGTTTAAAGATATCTTAAAAGAAAAAGCAAGCTTTATAAATAAGCAATTAGATAGATTTGTTCCCAATTGCATTCCTGAAGAATTATCTAATGCAATGAGATATTCTTTGGAAGCAGGTGGAAAAAGAATCAGGCCTATCTTAGTTATTGAATCTGCAAAGGCTGTCAAAGAAGATGTAAATGTTGAAGATTTTATAGATATAGCTATTTCAACAGAATTTATTCATACTTACTCTTTAATTCATGATGATTTACCTGCTATGGATGATGATGATTTAAGAAGAGGAAAG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCTGAACCGTGTGGGTTATAAAG # Alternate repeat : GTTACATCTGAACCGTGTGGGTTAGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 456-1799 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000213.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_186, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 456 29 100.0 36 ............................. AGCAAAAACGCAAGCTCATCCGCTTCCCACATCAAA 521 29 100.0 38 ............................. AGGTTTATTTTGCTTATCATGACACTTCTTTCGTTTTT 588 29 100.0 37 ............................. AATGTTTTTCTTAGGTCGAAAGTGGCTATGAGTTTTT 654 29 100.0 36 ............................. TCTTGTTCTTGTAGCCATGTTAAGAACATTCCAAGT 719 29 100.0 36 ............................. GGTCTTCCGCTAAATCCTTCAATTCATTTAAAACAT 784 29 100.0 36 ............................. TATCTTGCATTTTCCCTGCCCGCTGATGCCCGTCAT 849 29 100.0 38 ............................. CTGTTGCCGCTATTTCTTTAGGTGGTCTTCCACCGTTA 916 29 100.0 36 ............................. AGGGATTGTTTGGAATACGGGATTTCACTATCTCTC 981 29 100.0 37 ............................. CTTTGTGAACCTATTATGCTTTTATTATACATGTCAA 1047 29 100.0 36 ............................. TACATGCATGACATTTCAGCATTTAATCCAACGATA 1112 29 100.0 37 ............................. GATTGTCAATATTTGGTGAATGAGTTTTGTTCTTATC 1178 29 100.0 37 ............................. CTGGTCTTGAAGCTATTTTGAAAATGCTCGGAAACTT 1244 29 100.0 36 ............................. TAATTCAAAATATTCTTTAGAGATTTTATCAATTTT 1309 29 100.0 37 ............................. ATTTGTCAAGTGTATAATGGCACAGGATAGGTAGGGA 1375 29 100.0 36 ............................. TTATCACTATTGCCATTTTTATGCTCCCTTAAAAAT 1440 29 100.0 39 ............................. CTAAGGAAATTAACGGATTGTTTTAACTTGGGTTAAAAA 1508 29 100.0 37 ............................. CTTGTTCTGTGCTTATATGTTCGCTATCCTTAACAAG 1574 29 100.0 37 ............................. AATCAAATAAGTAGTTAAGGATGTTCTGCAATTTTTC 1640 29 100.0 37 ............................. TTGTAAGAAATCTCGTACTCCAACTCAGGTCCTGCAC 1706 29 100.0 36 ............................. ATTGAAAGATATGGAGAATATGGCAGAAAAGCAAAA 1771 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 21 29 100.0 37 GTTACATCTGAACCGTGTGGGTTAGAAAG # Left flank : GTTGCTTAATGGCTTGGTGAGATGACTTAACAGTCAGTAAAGCTAAGGTATTGGTAATGTGATTTTATTTTTTGATGTTTGATTAGAGCTTGTGTTGTGATGGTTTAAAAGGGATTTTTTAAAAAGTAGTTTTAAGTATTTGTTGAATTAAGCTTTTCAATTTTAAAGTATTTAATATTTAAATTTTTGAAAATTTAGAATTTTTTATTTTAGAATTTTTCAAGATCGGGAAGTTAAGGAGTTATATTTGCAGCGGGCTTCTGAGTTTGTGGTTTTCAGCAGTTGGCTTGTGATGGGAAGTTAAAGGATAAAATATAATAATATATTTTCTGTATATCGAGGTTTGCGGAAAAAAATATCAACTTGCAGGTTTTTTAAAAGTTTGGTATAATGGTTATCAGAATATTGATAGAGTAAGCTATAAGCGATTTTATTTTTGAGTAAAAATTTAACGGG # Right flank : GATATATCATAAAATTATTAATCTGTCAAAAGGAGATTAGTAATAAAATAAACAGAGAAAAACAATTCTTAATTCTTACAAATTTGTAATCTTTATTTAATGTTTCTGTAATTGATTTTATGAAGCAAGTGGTATAGAATAATATTACAAATTCAAATAGGGGGAATAAAAGATGAAAAAATTAGTAGCAACAGCATTGGCAGTAGCAGTAGTAGGAACATCTGCATTTGCAGGACAAAACAGAGGAGTTGCACCAGCAACCAATACAGTACAATCACAGGCACAAGCACCTGCTGAGGCTATGAAGAAACACGAGCACAAGCATCAGCACAAGTATCAAAAGAAAGCAGAAAAGCAAAACGAACAAAAGCCAGCAGACAATCAAAACAACGAATAATCTAAGTAATTCCTAACAAAAAGCCCGCTTTATGCGGGTCTTTCTCTCTTTAATCATCAAAACGGTTACATCTGAACCGTGTGGGTTAGAAAGATTGTTGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCTGAACCGTGTGGGTTAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 8920-7706 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000055.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 8919 29 100.0 37 ............................. TTTGCATCAGCAAATTTAAACTTGACTTTCGGCAATT 8853 29 100.0 36 ............................. AGACATGATCCGTCGGCAAATATTTTTAGTATCTTC 8788 29 100.0 36 ............................. TATTCTTTACCAAAAAACTCTTTCTGAAGCCCTTTA 8723 29 100.0 38 ............................. GCGTCCAGTACCAGTAGGCTTCGAGAACGTGGGAAGGT 8656 29 100.0 36 ............................. TCATTTCTTTGATATACCAGGGGGTTGCGTCCCCCA 8591 29 100.0 38 ............................. TTTTTTCTTTGATGTATTCTTTTATTAGTTCAATATCT 8524 29 100.0 38 ............................. TTTCAATAAACATATCCAAATCTCCAAAAGCTTCTGCA 8457 29 100.0 37 ............................. GTGTATATCCCTGTCTTCTCATTTCTAACGCCTTTTC 8391 29 100.0 36 ............................. CAGCATCTCTTCCAATTGGATTTCCTTCTGTTAGGT 8326 29 100.0 36 ............................. AGCAGAGAAAAGAACGGAAATATTGGAAAAGTTAAA 8261 29 100.0 36 ............................. CTTTGAGTTGCTATGTGTAAAGCAACACTTGATGCA 8196 29 100.0 36 ............................. CATAATAATGCTGTATTTCTTTTCAAACATTTGATG 8131 29 100.0 37 ............................. CTGATCTATAAAGATCAGAGAGTAGATCGTTAATAAA 8065 29 96.6 38 ........................G.... ATATTGCCAAATGGGAAAGTGAAATAGAGAGATTGAGG 7998 29 96.6 37 ........................G.... CTTTCTATATCATCAACTTCAAATCTCTCCTTTAATC 7932 29 96.6 37 ........................G.... AAGACAATAGAACAAGCACATTTAATCCAGCAATTAC 7866 29 96.6 36 ........................G.... GTATGTTGGTAATGTTAGGGCGTTGTCGTCGTTTTC 7801 29 100.0 36 ............................. TTACACTTAATGATGAACCTTTGCATCTAATCATAT 7736 29 100.0 0 ............................. | TA [7711] ========== ====== ====== ====== ============================= ====================================== ================== 19 29 99.3 37 GTTACATCTGAACCGTGTGGGTTATAAAG # Left flank : GTGTGGGTTATAAAGTATTGTTGCATTGGAAGACGCAAGCATTCCTAAAG # Right flank : TGAGATGGGGGACGTTATATCTGAACTAATGGTTTAAATATCGTTTCGTGTGTAATAATTTTAAAAAGAAACCTAATCAACCGCCTTAGGATATGAGCCTAAAATCTTGAAAAATGGAACGTTAGATTTTAATTCTTCAAGAGTATTTTTTACTACTTCGTCATCAATATGACCCTCAATATCCGTAAAGAAAATGTAATCCCAAGCCTCTTTTTTAGATGGTCTTGATTCTATTTTAGTCATATTTATACCATTTCTATAAAATGGCTCTAAGGCTTTATATAACGCACCAACCTCGTTTTTTACAGAAAAAATAAACGTTGTTTTATCATTTCCTGTTTTGCTCGGTATTTCATTACCAATGATTAAAAATCTTGTATAGTTATAAAGATGCTTATCTATCTTTCTTTCTAAAATGTATAATCCATAAACTTCTGCCGCTGATTCGCTGGCTATTGCTGCAGATTCATAATCATCTTTTGCCATTTCTGCAGCTTTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCTGAACCGTGTGGGTTATAAAG # Alternate repeat : GTTACATCTGAACCGTGTGGGTTAGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 9011-9235 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000053.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_207, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 9011 29 100.0 36 ............................. TTTTCTGAGTTTGATTCTAATAGTTTATTTAAGTCA 9076 29 100.0 36 ............................. CATATGCAGGTAATAGAAACTTAAATAAAAGGAGGT 9141 29 100.0 37 ............................. GGTAGAAATCACATGATCGGGAACCACAACAAAATCC 9207 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 100.0 37 GTTACATCTGAACCGTGTGGGTTAGAAAG # Left flank : AGACGTTAGAGATTGGTTTATCAATAATTTAATGATTTTTGTTTGATTGATTGATGAGTTGGTAAAATGATTTATAAGTCAGTAAAGCTAAGGTATTGGTAATGTAATTTTATTTTTTGATGTTTGATTTAAGCTTGTGTAGTGATGGTTTGAAAGGGATTTTTTGAAAAGTGAATGTAAGTATTTGTTAAATAGGATTTTTTGATTTTGAATTTTTTAGCTTTTAAATTTTTGAAAATTTGTAATTTTTTATTTTAAAATTTTTTCAGATCGGGAAATTAAGGAGTGATATTTTCCGCCCCTTTCTGAGTTTAGGGTTTTCAGCAGTTGGCTTGTAGCGGGAAGTTAAAGGATAAAATATAATAATATATTTTCTGTATATCGAGGTTTGCGGAAAAAAACTTCAACTTGCAGGTTTTTTAAAAGTTTGGTATAATGGTTATCAGAATATTGATAGAGTAAGCTATAAGCGATTTTATTTTTGAGTAAAAATTTAGCGG # Right flank : TTCAATACATCAAAGTTTGCAATCAAGTCAACTTTGGTTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCTGAACCGTGTGGGTTAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 26-2351 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000056.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 26 29 100.0 36 ............................. CATTATCAATTAGAATTTTTGGATTTTCTATATTGT 91 29 100.0 36 ............................. TCGCCAAGTATGTTTATGTTAATTCAGGCATTGCGT 156 29 100.0 37 ............................. TGACATCCTCCTCTCATCTTCTTAAATTCCTACATTT 222 29 100.0 37 ............................. AAAAAGACTATCAGATATATCAGAAAAATCTACAATA 288 29 100.0 37 ............................. CTCGATCATGATTTTATTTACCATGTTTCATCTCCTT 354 29 100.0 37 ............................. TCATTTTTTCTGTGTCAGAATAAATATATTCTATCTC 420 29 100.0 36 ............................. CAGGCTTGACAGAAGATGAAAAACAAGCATGGATTA 485 29 100.0 36 ............................. AGTAATACAGGAGATTATACTCTTGCCCCTGAAAAT 550 29 100.0 37 ............................. TACAACTCAGACTTTTTTGACTTATTAAAAACAGACT 616 29 100.0 37 ............................. GTGAGTTTCAGGCACAGGGTTAAGATTAAGCAAGCCT 682 29 100.0 36 ............................. GTAATAAAGCGGAGCCGAAGCTTGTGTAGAAGTTAA 747 29 100.0 36 ............................. GTCGCATATGCTAAAAGATTCTGTTTAGCTGTCTCA 812 29 100.0 36 ............................. TCTTCAATATCAACTTCAACAAGCAACTTGTAAGCT 877 29 100.0 36 ............................. TTTGCTTTAAAGCTAATTCTATAAACAAAATCTCCG 942 29 100.0 36 ............................. AGAGCATGGGCATGAGGTTGGAGCTGAGACAACAGA 1007 29 100.0 36 ............................. ATAGCATTGTCAGTGAGATAAACTTCGCTAATTTCG 1072 29 100.0 38 ............................. TTCTTTATATGTACCGTTACATCCATTGAACTGTCGTA 1139 29 100.0 36 ............................. TAGAAATAGCATTGCAATGCCAAAAGTAGCAAAAAG 1204 29 100.0 37 ............................. CCTTTTCAACGTAGAGATTGTTGATTAGGAGTCCGTA 1270 29 100.0 36 ............................. TAGAGAAACAATTTTAAAATTTGGAAAGATAGAAAT 1335 29 100.0 36 ............................. TTTAATTTTGAAACAAAAATTGATGCTGTGATTAAT 1400 29 100.0 36 ............................. TTTTGGGGTCTTTTGGCTTTTTCTATCAATTTTTGA 1465 29 100.0 36 ............................. AAATTATACGATGCTATTTTAAGAATGGAACCTAAA 1530 29 100.0 37 ............................. TCTCTTACTTCATAAGCTGCAACATCCTCAAATTTTA 1596 29 100.0 36 ............................. AATATTCTCTATAATCTTCTTCTCTGTCAAAAACAA 1661 29 100.0 37 ............................. TCTGGAAACCTAACGCAGTCATTGCAACAAATTCAAA 1727 29 96.6 38 ........................T.... GAGTTTTTTAAGTAATAAAGATTAGAATAATACGGAAC 1794 29 96.6 36 ........................T.... AAAATATCTGTAGATACTGACAACTTATATATTGGC 1859 29 96.6 40 ........................T.... ATTTTTTTTATGCAAAAATCATGCCATTTTTTTCTTTCTT 1928 29 96.6 36 ........................T.... TCAGGATCTATTAGTGTTTTTAATAATTACAGTTTT 1993 29 96.6 37 ........................T.... TATATAATTGTAATCACTACTTAACTCCTATAAATGG 2059 29 96.6 36 ........................T.... CTGTTTCTTTGAGAACATCTAAATCAAATTCCGGTA 2124 29 96.6 37 ........................T.... CTGGAATAACATCATGGTAATTTGGATATCTATTTTC 2190 29 96.6 37 ........................T.... AGTGATACAAATAAACTAACTCACGGATATCACAGAT 2256 29 100.0 38 ............................. ACTGTTGCAAAATTGCAATTTTTGCAAAAATGCAACAG 2323 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 36 29 99.2 37 GTTACATCTGAACCGTGTGGGTTAGAAAG # Left flank : TAAAAAATACATCAATACTTAGAAGG # Right flank : GAATGCCAACGAAATTAATCCATCTTGTTTTTTCATTCATTACTTGAAAAATAAAGCTTTTTCTAATATCTTATTTGTATGGAAGAAATCATAAGCTTTAAAGTAGAAGAAGAGTTTTCAAATAAGAGATTAGACCAATTTTTAGCCTTAGTCTATCCTGAGTATTCAAGGTCTTTTTATCAAAATCTTATAGAAAACGGATTTGTATTGTTAGATAACAGTCCTGTTAAAAAACCATCAACAAAAGTAAAAACCGGGCAAGAGTTTACAATCATCATACCGCCGCCCGAGCCTTTAGAAATTGAGCCTGAAAATATTCCGCTTGAAATCTGCTATGAAGACGAAGATTTAGCAGTAGTCTATAAACCACCCGGAATGGTAGTCCATCCATCGGTTGGTCATACATCTGGAACATTGGTAAATGCTTTACTTTATCATTTTAAAAATGTATCACAGTATCAAGGAAAAGAAAGGGCAGGGATTGTTCATAGGTTAGATAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCTGAACCGTGTGGGTTAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 3421-3649 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000036.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_190, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3421 29 100.0 38 ............................. CCCATTAGCGACAGATTTATCATAGATGCTTCATCTAT 3488 29 100.0 37 ............................. CCGGATAGGGAATGTTGCGTATCCGCTATTGATGTCA 3554 29 100.0 38 ............................. CTGATGACATTTAATTTTACTACAACCATGCACCGTTG 3621 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 38 GTTATTAGCCTACCTATGAGGAATTGAAA # Left flank : GACAATGTGGATTTTTGGAACAGTCTCGATTGCTTAGTAGCTTGGTGAGATGATTTGGCAGTCAGTAATGCTAAAGTATTGGTAATGAGATTTTATTTTTTAATATTTGAATTAAGTTTGTGTAGTGATAGCTTAAAAGAGATTTTTTGAAAAGTGGTTGTAAGTATTTATTGAATAAAATTTTTTGATTTTAAAATTTTTAGTACTTAAGTTATTGTTGATTTAAAATTTTTTGTTTTAGATTTTTTTAAATCGACAAGTTAAAGAGTGGTATTTGCAGCGGGCTTCTGAGTTTGTGGTTTTCAGTAGTTGGCTTGTGATGGGAAGTTAAAGGATAAAATATGATAATATATTTTCTGTATATCTATATTTTCTGTATATCGAGGTTTGCTGCAAAAAACTTCAACTTGCGGATTTTTTTAAAAATTTGATATAATGTTTTATACATTGGTAATTGAACAAGATTTTTACGATTTTATTTTTGAGTTAAAAGTTGACGG # Right flank : ATGCATTAAACTCAAATCTGATTACTCCACTTTTCCGACAATCCTACCTGAAAACCTTAGTCAAAATAATCTCGTTCTTGAATCATAACTCTTTATGACTATATTTAAACTCTAATAAATCTTATAAAGGATTAAGATGGACTTAAAAGGAAAAAACGCTTTAATTACAGGTGGTTCTAAAAGGATTGGCAGGGATATTGTTTTAGGTCTTGCCGAGCATGGCTGTAATGTACTGATTCATTATAACTCTTCTAAAGAAGAAGCTGAAAAAGTATTACAGCAAGCAAAAAGTTTTGGAATAAAAGCAGAAATTATAAGAGCGGATTTACTTGATGAAAATCAACTTATAAGTTTAGTAAATCAATCACTTAATATTTTTGGACACATAGACATTCTAATAAACAACGCATCAATCTACTACAAAAAACCATTAGAAGAAGCTACCTTTGAAGATTTAGAAATTTTTTACAAGATACATATAAAAGCACCATTCTATTTGT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTAGCCTACCTATGAGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 5159-5441 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000031.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 5159 24 100.0 41 ........................ AGAGAAATTTTGAATTTTTTCGAGTTAGACTATCCAGGTCA 5224 24 100.0 39 ........................ TATATTAGGAAATGCTTTCAGTTTGTCAATGGCGAGTCA 5287 24 95.8 43 ...................T.... TAGGAATAAACTCTAAAAGAAGTTGGTACCGATTTGTGTAGCA 5354 24 95.8 40 ......T................. ACACAGGCGGTAGGAGAGCCACATGGATTTACTTAGGTCA 5418 24 83.3 0 ...........A..A....AT... | ========== ====== ====== ====== ======================== =========================================== ================== 5 24 95.0 41 ATTCCTCATAGGTAGGCTACAAAC # Left flank : TTTGGGTTTTATGTCAAATAATACTGGAATTTGAGATTGATTTTTTAGGTCGATAAAGTAGTCTACTTCCGGAATTTCTTTTTCAAGTTCTTGTTTATAACGCTCTACCAAACAGCCTGTAACGATTATTTTTTTGTTTGAATTTTGTTTTAGCTTGACAGCTTCTAAGATTGTTTCAATAGATTCTTCTTTTGCAGGCTCAATAAATCCACATGTATTTATCAATATAACATCCGCCTCTTCTGGATTGGCTGTAAAGCTTATGTTTCCTTGGTTTAGTTTTCCAATTAAAACTTCTGTATCTACAAGATTCTTAGGACAGCCTAAGCTTATAAAATTTATCTTTAAGTTTTTCACATAACCCTCTATTTTAAATTTGATTTGAATAAGATAACCTTTTTGACTGAAAATTTCAAGATGGGGTGCTGGAAAGTGTTCCAAAATTTTTATGAGTTTACCTTGTCCGTCATCTTTGGACTGTAAGCCAAAGGATCTTTCTC # Right flank : CCCGTCAACTTTTAACTCAAAAATAAATTCGTAAAAACCTTATTCAATTGCCAAGTTGTAAAACATTATAACACATTTTTAAAAAGTCTGTAATTTAGATAAATCAATAGCTTATACAACTTTAACGTGAGAAGCGAAACGTGAAACGTAAAAAGAATTTCAAATCCGTCTCACATCTCACGTCTCACGTTTCATCTCTTACATAACCCACACGGTTCAGATGTAACTGAGTTATTATTGAAAAAGTGGGAAGAATGGAACGAGCTTTCTAACCCACACGGTTCAGATGTAACCCTCAACCAGGAAAAAAGGGCGGAGTAGATTATAAGGACTTTATAACCCACACGGTTCAGATGTAACTTTAATATGAGGAGGTACTGAGAGATGGAAAAAGTACTTTCTAACCCACACGGTTCAGATGTAACTCGAAGGACACGGAGACGTTGTAGTTATTGAAGTATCCTTTCTAACCCACACGGTTCAGATGTAACATTGGAGGC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTCATAGGTAGGCTACAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 7571-5638 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000031.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 7570 29 100.0 36 ............................. GGCATTCAAATATTTCTAAACAGATTTGGACAGTAC 7505 29 100.0 38 ............................. GATTTTATATATGTTATTTGGGAATATTTTTTCCATAT 7438 29 100.0 37 ............................. GAAATTTCTCTGTGTTTAAATGGTTGTTTGTTTCATG 7372 29 100.0 36 ............................. CGAAATCAAAATCAAAATCTTCAAAACCTTTAAAAA 7307 29 100.0 36 ............................. GAAGTTCAAAAAACAGATACAGATAGAGTAGCGTCG 7242 29 100.0 37 ............................. ACAAAAAGCGGGCGTGCTTCTGTTTATGCTTATTACA 7176 29 100.0 37 ............................. AGTACAATCAATAACTGTAAAGTCGTCATCTATACTT 7110 29 100.0 37 ............................. GCAGTGATGCCGGCAGGTAGTTTGACAATTATTTTAT 7044 29 100.0 39 ............................. CTATTCCTAGTTCATCGGACATGTTTTCTATCTCTCTGA 6976 29 100.0 35 ............................. CTAAAATAAAATACTCTGTAACTATTACTTCCGCC 6912 29 100.0 36 ............................. TCAACTTCTACTAATCTAATCATTAACATCTTCATT 6847 29 100.0 36 ............................. GTTTCATCTATTGCAATTTTTCTTGCAAAATGGCAA 6782 29 100.0 36 ............................. AACCAAAATTCTCTCATCTTTGCTTCCTCCTTCTAC 6717 29 100.0 36 ............................. ATCAGTATGCAAATGCCATCCTGGTGGGTGGCATGG 6652 29 100.0 37 ............................. AAGCAAAGTTGCTTAAAATCTATTGTAGGTTATAAAG 6586 29 100.0 36 ............................. TGCCAAGAATTTAGCCTGATGAAGTGAGAGCTTACC 6521 29 100.0 37 ............................. AAAACAGATTAATAATAACTCTAACAGCCTGCCAACA 6455 29 100.0 36 ............................. GAGATTGGCAGCTGCTTTCAAGGCTCCGTTTGCTAT 6390 29 100.0 38 ............................. TTGCTATTTCAGAAGAGAAGTTGTCAAGTTTATCTGAG 6323 29 100.0 37 ............................. TATATCTATCCATATCACAGCCGCTACAAGGCCAGAA 6257 29 100.0 36 ............................. TGCTTTTGTAGATTAATGGATAGTTAATCATCCTTA 6192 29 100.0 37 ............................. TCCCACTGATTATTGTGATGATACTGAAACTCAACAA 6126 29 100.0 36 ............................. TAAAATCACTAAAAAATCCTATTTTATCAATAACTT 6061 29 100.0 36 ............................. TACTTTTTCCATCTCTCAGTACCTCCTCATATTAAA 5996 29 100.0 36 ............................. ATTTAACATCGAAAAACAAAGGTTCCAGCCTCCAAT 5931 29 100.0 37 ............................. GATACTTCAATAACTACAACGTCTCCGTGTCCTTCGA 5865 29 100.0 36 ............................. TACTTTTTCCATCTCTCAGTACCTCCTCATATTAAA 5800 29 96.6 38 ........................T.... TCCTTATAATCTACTCCGCCCTTTTTTCCTGGTTGAGG 5733 29 100.0 37 ............................. CTCGTTCCATTCTTCCCACTTTTTCAATAATAACTCA 5667 29 96.6 0 .........................T... | T [5643] ========== ====== ====== ====== ============================= ======================================= ================== 30 29 99.8 37 GTTACATCTGAACCGTGTGGGTTAGAAAG # Left flank : AGACGTTAGAGATTGGTTTATCAATATCTTAGCTATTTTTGTTTGATTGTGTAGTGGCTTAGTGAGATGATTTATAAGTCAGTGAAGCTAAGGTATTGGTAATGTAATTTTATTTTTTGATGTTTGATTTAAGCTTGTGTAGTGACGGTTTGAGAGAGATTTTTTGAAGAGTAGTTATAAGTATTTGTTGAATTAAACTTTTTGATTTTGAAATTTTAAGCTTTTAATTTTTTGAAAATTTGTAATTTTTTATTTTAAAATTTTTTGAGATCGGCAAGTTAAAGATTGATATTTGCAGCGAGCTTCTGAGTTTGGGGTTTTCAGCGGTTGGCTTGTGATAGGAAGTTAAAGGATAAAATATAATAATATATTTTCTGTATATCGAGGTTTGCTGCAAAAAACTTCAACTTGCAGGTTTTTTAAAAATTTGGTATAATAGTTATCAGAATATTGATAGAGCAAGCTGTAAGCGATTTTATTTTTGATTAAAAATTTAACGG # Right flank : AGATGAAACGTGAGACGTGAGATGTGAGACGGATTTGAAATTCTTTTTACGTTTCACGTTTCGCTTCTCACGTTAAAGTTGTATAAGCTATTGATTTATCTAAATTACAGACTTTTTAAAAATGTGTTATAATGTTTTACAACTTGGCAATTGAATAAGGTTTTTACGAATTTATTTTTGAGTTAAAAGTTGACGGGTTATTAGCTTATCTATGAGGAATTGACCTAAGTAAATCCATGTGGCTCTCCTACCGCCTGTGTGTTTGTAGCCTACCTATAAGGAATTGCTACACAAATCGGTACCAACTTCTTTTAGAGTTTATTCCTAGTTTATAGCCTACCTATGAGGAATTGACTCGCCATTGACAAACTGAAAGCATTTCCTAATATAGTTTGTAGCCTACCTATGAGGAATTGACCTGGATAGTCTAACTCGAAAAAATTCAAAATTTCTCTGTTTGTAGCCTACCTATGAGGAATGAGAAAGATCCTTTGGCTTAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCTGAACCGTGTGGGTTAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 11235-10549 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000013.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 11234 28 100.0 38 ............................ CTTTGAACAAGCAGGAAATCGTGTGTCGGTGGATTCTG 11168 28 100.0 36 ............................ CTTTATAGGAGGTTGTATTATGCGAGTGTTTATTGA 11104 28 100.0 38 ............................ TTAAAGATTAGAACCGTTGAGCCAAAGACTTGCGGGAG 11038 28 100.0 41 ............................ TTTTGCATTACACCAGCAAGTTGTAGCATTCTTTGATATTT 10969 28 100.0 39 ............................ TTTCGAACTCATAAAGATTGCCATATATAAAACTTTCTA 10902 28 100.0 37 ............................ TAAAATAATCATAAACCACACCTTCTAACGCCTCTCT 10837 28 100.0 35 ............................ CAACCATCTTGAAACCTGTCCTGTTGGATAACTCA 10774 28 92.9 37 .................G.........A ACAATAGATTTGGCTACTTGCCTTCGTTTGTGTATGA 10709 28 82.1 38 ...AT...T........G.........A ACATGTTGATGACCTGCTCAAATGTGATTCGCTCTGCC 10643 28 85.7 39 ...AT............C.........A ACACATAACCTATATCCCATAATCCAAGTCTTCCAGCTC 10576 28 75.0 0 ...AT............G....C..ATT | ========== ====== ====== ====== ============================ ========================================= ================== 11 28 94.2 38 GTTTGTAGCCTACCTATTAGGAATTGAC # Left flank : GGTTTATCAATATCTTAGTGATTTTTGTTTGATTGCTTAGTAGCTTGGTGAGATGACTTGATAGTCAGTGAAGCTAAGATATTAGTAATGTGGTTTTATTTTTTGATGTTTGATTTGAGCTTGTGTAGTGATAGTTTGAAAGAGATTTTTTGAAATGTAATTTTAAAATGTAATTTTAAGTTTTTGTTGAATTTGGCTTTTTAATTTTGAAATTTTCAGCATTTAAATTTTTGAAAATTTACAAATTTTTAATTTAAAATTTTTTTAAGATCGGGAAGTTAAGGAGTGATATTTGCAGCGGGCTTATGAGTTTTGTGTTTTCGGTGATTGGCTTTTGATGATAAGTTAGAGGATAAAATATAATAATATATTTTCTGTATATCGAGGTTTGCTGCAAAAAACTTCAACTTGCGGATTTTTTAAAAATATGTTATAATGTTTTATACATTGGCAATTGAATAAGATTTTTGCGATTTTATTTTTGATTAAAAATTTAACGG # Right flank : TAATTTTTCTTTGACAAACATTAGAAAGCTGATTTAAAATTATTAACAGCAGAAAAATAATGAGAGATTAAATGCGAATAAAACTTGTTTTAGAGTCTGAGGGAAATAACCAGATAAGTTTGCCTGTGCATTATAATCAAATAATTCAAGGATTTCTTTATCATAATCTTCCCACTGAATTAGGAAAATTCCTCCACGACGTTGGGTTTTTCTATCATAACAGACCTTTTAAACTCTTTACTTTTTCTAAAATCTTTTCTAAAAAAATCACTATAAATAACTCTACAGCTTATTTTGAATCACCAATAACAATTTTTATATCTTCCGCAGCAGAAGATGTCTCAAAATCTTTTGCTAAATCTTTACTTATATCTGAAAAAATTTTTCTTAAAAATCAACCTCTGACACTCAAATCAATAGAAATTTTACAAAAACCAAAATTTGATTTTATAAACAAAATTAAAACTCTATCTCCAATAACTGTGTATAAAACTATAGAA # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATTAGGAATTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 9847-7654 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000022.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 9846 29 100.0 37 ............................. TTGAAATCTTTTCATCTATCTTAGCCTGTGTTAAATC 9780 29 100.0 36 ............................. TCTACAAGGCGGGGTAGTTCACAAAGGAAAAATTAA 9715 29 100.0 39 ............................. TATATAACTCTCAGTCATCTCTTTCGCAAGAATATATCT 9647 29 100.0 36 ............................. TTCTTGGATGTCGGCAGGTATCTCATATGAAGTATA 9582 29 100.0 36 ............................. TCAGGAATAGTGATCCTAACCTCTTTTATCAACTCC 9517 29 100.0 37 ............................. AGTTATCTCTTCTGGCTTTAATACTCTGTATTCATTT 9451 29 100.0 38 ............................. GCTGAAAAATCAGCCGACCTATCTATGAGCCTTTTTAA 9384 29 96.6 36 ...C......................... TGTTGTGCTTGAGATTGTGATACTTTAGCATTAGCA 9319 29 100.0 38 ............................. ACTATGAAATTTAGTTTAAATACTACTTCTTCTGCTAC 9252 29 100.0 37 ............................. ATGATAGCAAAAAAACATATGCAAGTTAAGGATAAGT 9186 29 100.0 37 ............................. ACTTTTTAATGCTGATGGTGGGGGAGTTCCCCCACAC 9120 29 93.1 37 ...CT........................ TTAATAATTCTTTGAAAACCTCAACGTTTGCATCCTT 9054 29 100.0 37 ............................. TCGCTGTTTTCTGGAATAAAAACGTTCCAAGTTCCAG 8988 29 96.6 38 ........................T.... TCTATTGCAATATATACTGCATTAAAGCGTTTCACTGC 8921 29 100.0 38 ............................. TTCCACCACACCATAGATGATGACTTGGAAATTACCTG 8854 29 100.0 36 ............................. TTATACATAACAACAAACAGTAAAGAGAGCTTCAGT 8789 29 100.0 37 ............................. ATACATTTTTCACTACAGCATTTATGGTCACTGCGTC 8723 29 100.0 36 ............................. GATGACGGATATGTGGAGATAGGGGAAGAGAAGATA 8658 29 100.0 36 ............................. AAATTTAAATTTAAATACAGCTCTAAACTCAAGTAC 8593 29 96.6 36 .........T................... CTTCTTGGGCTAGTTTATTTAGTGTGTGGAATGCGA 8528 29 100.0 36 ............................. AAATCTTAGAGATATACCTATAACATCAGGATACTT 8463 29 100.0 35 ............................. GCATATCCGCAGAGGATAAACAAACTGTGTCCTTC 8399 29 100.0 36 ............................. TGTATTTTTCATATTCATCACCACTGCTAAAAACTA 8334 29 100.0 36 ............................. AACTTTAAGAAACATTGATATAAAGCAAGCTGAAAG 8269 29 100.0 38 ............................. TCGAAATAAGGATGTTCAAATTGAAGGTGAAGACTCTG 8202 29 96.6 37 ...C......................... ACTTTTTAATGCTGATGGTGGGGGAGTTCCCCCACAC 8136 29 93.1 37 ...CT........................ TTAATAATTCTTTGAAAACCTCAACGTTTGCATCCTT 8070 29 100.0 37 ............................. TCGCTGTTTTCTGGAATAAAAACGTTCCAAGTTCCAG 8004 29 100.0 36 ............................. TGACATGTATTCATAAATAACATCGAACGTAAATTT 7939 29 100.0 36 ............................. ACAGTTCGTCATCTCTTTTGATGTAACATTAATCTT 7874 29 96.6 37 ...C......................... CTATAGTGTCCGAAAGGTAGATGTTTTTTAGATATTC 7808 29 96.6 93 .........................C... AGGTGAAACGTGAGACGTGAGACGTTTTAAAAGAGCGATAATAATTTAATTCTTTCTACGTTTCACGTTTCACTTCTCACTTCTCACGTTAAA T [7784] 7685 29 82.8 0 ...C....................AG.TA | AG,T [7657,7660] ========== ====== ====== ====== ============================= ============================================================================================= ================== 33 29 98.4 39 GTTACATCTGAACCGTGTGGGTTAGAAAG # Left flank : AGACGTTGGAGATTGGTTTATCAATATCTTAGTGATTTTTGTTTGATTGTGTGATAGCTTAATGAGATGACTTAATAGTCAGTGAAGCTAAGGTATTGGTAATGTAGTTTTATTTTTTGATGTTTGATTTAAGATTGTGTAATGATGGTTTGAAAGGGATTTTTTGAAGAGTGAATGTAAGTACTTGGTGAATTAAACTTTTTGATTTTAGATTTTTTAGTTTTTAAATTTTTGAAAATTTGAAGTTTTTTATTTTAAATTTTTTTGAGATCGGCAAGTTAAAGAGTGATATTTGCAGCGGGCTTCTGAGTTTGTGGTTTTTGGAAGTTGGTTTGTGATAGGAAGTTAAAGGATAAAATATAATAATATATTTTCTGTATATCGAGGTTTGCTGCAAAAAACTTCAACTTGCGGATTTTTTAAAAATTTGGTATAATGTTTTACACATTGGTAATTGAATAGGATTTTTGCGAATTTATTTTTGAGTTAAAAGTTAACGA # Right flank : TTATCTTAAACTTAAAATCACGACAGCTTTAAGACTGTTTCAAAATTTTTCTAAGCTTACCTTTCTGTGTCATCCATGAGGACTTTAGTCCGAAAGATGTCCTCTTTTGATTTAAAAAGAAAAAATAGATTCTTCGCTTACGCTCACAATGACAAGCTGATTTTTGCAAGCAGTCCTTGAAAATGCTTGACTGATTAAATGATTGAAGAATTTTTTTTATTTAACACTGTAAAATTTCCTATCTATTACTTTTCACTTTATTCAACGAAATAGCCAGCTTTATAGCTTCTATTGTAGATGATGGGTCTGCTATGTTTTTGCCTGCAATATCATAACCTGTTCCATGGTCAGGAGATGTTCTTATAAAAGGAAGTCCAAGAGTTATATTTACGGCTTTTCTAAAACAAAGAAGTTTCAAAGGAATCAATCCTTGGTCGTGATACATTGCAACATAAATATCAAAATCTTTATATCTATTAAATGCAGTATCCGGAGATAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCTGAACCGTGTGGGTTAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 9159-10947 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000011.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================== ================== 9159 29 100.0 37 ............................. AAACCATATCCATACCTCCTAAAAAATTTTTTTTAAA 9225 29 100.0 37 ............................. TTCTAATTTTTCTTGCCATTTATTTCCGCTACATTTA 9291 29 100.0 35 ............................. TTCGATCATGCTTAAGCTTCCGTCAGAATGTATAT 9355 29 100.0 36 ............................. TAGTAGAAATTTTTATTCTACTTACATCTGCTACAA 9420 29 100.0 35 ............................. AAGCTTTCAAAAGTCTTAAAACAACAAATATCAAA 9484 29 100.0 37 ............................. CTATATCATCAAGTGATGCTGTTTCTTCTGGTTCTAC 9550 29 100.0 36 ............................. CAATTATTATAACAATCTTGATAAGATTTAAAATAT 9615 29 100.0 37 ............................. TTGTTTCGGGTGTTTGTTTCAATTTTAAAATTGATTT 9681 29 100.0 37 ............................. TCAAACTCTATGTAGAAACGTTGCCCCTTTTCCCTTT 9747 29 100.0 36 ............................. TTATCTGTTTATTAATTTCTTTTAGATGCTTCTCAT 9812 29 100.0 37 ............................. GTAATATACTGTTCTTTCGCTTACACTGAAAATTCTT 9878 29 100.0 36 ............................. AATTAACAGCAACATTTAAAGAGTCTTCATTTTCAA 9943 29 100.0 36 ............................. TTGCATAGCAAATCCTGATTCTCCTGTTACTTTTAC 10008 29 100.0 36 ............................. AAAGATTTAAATAATGATCTCAACTCAGAAGAGCTT 10073 29 100.0 36 ............................. TTTCTCATATGTTTCCTTATCTACATAGATGCATTT 10138 29 100.0 37 ............................. TCAGGTGGTATAGTATGCGAAGTATTTGATAAATTAG 10204 29 100.0 36 ............................. GTGTTATATTAAGAGTAGCTTTTTCTTTTACTACTT 10269 29 100.0 36 ............................. GTGTTATATTAAGATTAGCTTTTTCTTTTACTACTT 10334 29 100.0 36 ............................. GTGTTATATTAAGATTAGCTTTTTCTTTTACTACTT 10399 29 100.0 36 ............................. ATTTTTCCAATTCTTCTATTATGATTCGTTTCACAG 10464 29 100.0 36 ............................. ATTCTTCCATAATAAATAGCCTGCTACAACAGCTGC 10529 29 100.0 36 ............................. TCATACACTATGGATAAATACTACAATGACTACAAG 10594 29 100.0 37 ............................. CAATGTACTCGAAGTTTTTTGTGTAGTTCTTGATTTC 10660 29 100.0 36 ............................. TATTCTCAACATGTATCTGGAACCACCTCTTAAGAT 10725 29 100.0 37 ............................. GTTGTTTTAACTGGGGAGCCTAAAAACTTTGGTTTGG 10791 29 96.6 98 .........................T... GTGAAACGTGAGACGTGAGATGTGAGACGTTTTAAAAGAATGATGATGTTTAAATTATTTCCACGTTTCACTTTTCACTTTTCAATTCTCACGTTAAA G [10816] 10919 29 93.1 0 ........................G...A | ========== ====== ====== ====== ============================= ================================================================================================== ================== 27 29 99.6 39 GTTACATCTGAACCGTGTGGGTTATAAAG # Left flank : AGACGTTGGAGATTGGTTTATCAATAATTTAATGATTTTTGTTTGATTGATTGATGACTTAGTGAGATGACTTAAAAGTCAGTGAAGCTAAGGTATTGATAACTTGATTTTATTTTTTGATCTTTGATTAGAGCTTGCGTAATGATGGTTTGAAATGGATTTTTTGAAAAGTAGTTATAAGTATTTGTTGAATTAAGTTTTTTGATTTTGAAATTTTTAGTGCTTAAACCTTTGAAAATTTGTAATTTTTTGTTTTAAAATTTTTTGAGATCGGCAAGTTAAAGAGTGATATTTGCAGCGGGCTTCTGAGTTTATGGTTTTTGGAAGTTGGCTTGTGATAGGAAGTTAAAGGATAAAATATAATAATATATTTTCTGTATATCGAGGTTTGCTGCAAAAAACTTCAACTTGCAGGTTTTTTAAAAGTTTGGTATAATATTTATCAGAATATTGATAGAATAAGCTATAAGCGATTTTATTTTTAAGTAAAAATTTAACGG # Right flank : AAAGTAAGTGTATTTTCAAGCTACTCTTGATTATTCAGCTCAGCCTGATATGGAAGTAATCTTATTATCATTCTGTCTTGATATCTTTTAAATCAAAAACAACTTCACAAAAGAATAACTTCTTATTACACAATAAAAACACTATCTTTAAAATCTATGGCTTACTTTGTTGAAAGCTTTAAACTTTCTTTTCTCAAATTATTGATAATTTAATTGTTTAGCTTAAGTTTAATAGTGATTAGAGTAATAATTTAGCAATTGCTAATATGCTATAATTATCAATCCTATCTATTTTAATTTGGAGGTTTATAAATATGGGTATGACAATAACTGAAAAAATAATAGCAGCACATGCAGGTAAAGATTATGTAGAACCGGGAGAGCTTGTAACTGTTAAAGTAGACCTTGCTATTGCAAACGATATTACAGCTCCGCTTGCAATAAAACAGCTTGAAAAATATGGCATAGATAAAGTTCATGACCCAAATAAAATCGCTCTT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCTGAACCGTGTGGGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 11616-10133 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000002.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 11615 28 100.0 38 ............................ TCATCGTAGAAACACCTATCACAAACCAACCAACTCCT 11549 28 100.0 37 ............................ TCAATCTTTACCTTCGACCTCTTCTCGCCCGATGGGG 11484 28 100.0 36 ............................ TAGCTTTAATACACATTCTTCATTGACCACCATGAA 11420 28 100.0 38 ............................ TTCTTGTCCCACCATTCGTTATATTCTCTTGCTGCTTC 11354 28 100.0 38 ............................ TTATTGATTTTATCATCTCTAACTTAATAAATAAAACT 11288 28 100.0 38 ............................ TACAGAGAACATAAACAAATTTCTATCACCTTTCTTAA 11222 28 100.0 38 ............................ TATCTTTATGAATGTAAGCCATGACTAAACACCTCCTA 11156 28 100.0 38 ............................ TACTAATATATTCCCATACAAGCTTTCAAGATTAGCGG 11090 28 100.0 38 ............................ TAATAAAAATTTTTTAATCCCACACGGTTCAGATTTAA 11024 28 100.0 38 ............................ GCCGCTTTTGGACGTTTTTTTGTGGGAAGCAGTAATAA 10958 28 100.0 38 ............................ GCCTTGCATTTATTACTTGTTGAACTGTCATTCCAACA 10892 28 100.0 40 ............................ GCATATACACACCTTTTCTATACTCAACACCAAACATTAA 10824 28 100.0 38 ............................ GCTTTGAATTTGTTGCAATGACTGCGTTAGGTTTCCAG 10758 28 100.0 38 ............................ GCTGAGTATATTCAAACTCTGATAGCTTTAAATTACTT 10692 28 100.0 38 ............................ GCTGAGTATATTCAAACTCTGATAGCTTTAAATTACTT 10626 28 100.0 39 ............................ GCGCAGGTAGTTTTTTATTTTAAATAAATCTCACAATGA 10559 28 100.0 38 ............................ GCAAAGCAGACCAGAAGGTTTTAGCAGACATTCAGGCT 10493 28 100.0 41 ............................ GCCTGAAGAAGATGAAAAGTCTTTCAGATGTGGTTATCTTA 10424 28 100.0 37 ............................ GCTTCAAAAAAGCTCCAACTTTTTTACGGAAATTCCC 10359 28 100.0 39 ............................ GCCGTAAACAAGCCCGTCTTTAATAGAGATTTTATCTTT 10292 28 100.0 38 ............................ CCGTCATAACTTGTGCTGTACTTGCATGCCCGACAGCT 10226 28 96.4 39 .................T.......... ACGCCTTCGCTTCTAAGAAGTCTTTTATGTCCCAGAGTG 10159 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ========================================= ================== 23 28 99.7 38 GTTTGTAGCCTACCTATGAGGAATTGAA # Left flank : AAACGTTAGAGATTGGTTTATCAGTATCTTAGTTATTTTTGTTTGATTGCTTGATTACTTAGTGAGATGATTTAGTAGTCAGTGAAGCTAAGGTATTGATAATATGATTTTATTTTTTGATGTTTAATTTGAGATTGTGTAGTGATAGCTTGAGAGAGATTTTTTAAAAAGTAGTTGTAAGTATTTGTTGAATTGAATTTTTTGATTTTGAATTTTTTAGTGCTTAAGTTATTGTTGATTTTAAATTTTTTATTTTAAAATTTTTTAAGATCGGAAAGTTAAGGAGTGATATTTTCCGCCCCTTTCTGAGTTTTGGGTTTTCAGCGGTTGGCTTGTGATGGGAAGTTAAAGGATAAAATATAATAATATATTTTCTGTATATCGAAGTTTGCGGAAAAAAACTTCAACTTGCGGATTTTTAAAAAATTTGATATAATGTTTTACACATTGGTAATTGAATAGGATTTTTGCGAATTTATTTTTGAGTTAAAAGTTAACGG # Right flank : GCTTTTTGAAAAAGTTTTGATATTGTCATAAAGATATTTCATAAATGATGATGGTTTAAATAACGTTACATCTTTTCATGTCAATCAAAAATGCTATAATAAATACTCTTAAACTTAAATACTCAATTTCAGGTGATTAAAATTGATTACAGACTCAGAAAAACAAAAACTTATTGACTATACAGTAAAGCTTGTTAACATTCCGTCTGTTATAGGTAATGAAAAAGAAATAGCAGACTTTGTAGAAAATTTTTTGAAAAATTACAATTTAAACATCATCAGACACAACAATTCTATAATAGCTTACGATAAATTAGAACCATCAAAAAAGACGATCGGATTTATCGGTCATCTTGACACAGTACCTGGAACAAATGATTTTACCGGTCAAATAATAGAAGATAGAATATACGGACTTGGTGCAAGTGATATGAAAGGTGGTCTTGCTGTTATGATGGCTTTGATAGACCACTTTTCTGATAAAGAAAAATCATACAACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATGAGGAATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1462-2995 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000191.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1462 29 100.0 36 ............................. ATATGCACTGATATTGATGCTGTAGAAGTTCTTGGT 1527 29 100.0 35 ............................. TGTAAAGGGGAAGGCTTCCTGTTTGCTGTAAACAT 1591 29 100.0 36 ............................. ATCTATATAGCATCCATTATCAGTTTTTACACATAT 1656 29 100.0 36 ............................. TAATGACTCCTTAAATTCATCAATTCTTAAATCATC 1721 29 100.0 36 ............................. ATCGGAAAGGATGCGGAAGGCATTCAAGTATTTTTA 1786 29 100.0 37 ............................. CCAAACATCACACGTAGAGGTTTATCCGCATCTACTG 1852 29 100.0 36 ............................. CCGTGATGGCTTTTATAATTTAATCACCAAAAGAGA 1917 29 100.0 38 ............................. AGTTGTTGGAGATGGCACAGTTAGAATGAGATTTGTTC 1984 29 100.0 37 ............................. TGACCTCTCTTTTGCCCGGGCTTGTCCCGGGCTTTTT 2050 29 100.0 36 ............................. GTCAGACGGGTCCTTTTTTGAAATCAAAAAGGACTT 2115 29 100.0 37 ............................. CAAAATAATGATAACCGTCAGATGCATAAAGTTTTAA 2181 29 100.0 36 ............................. GTCAGACGGGTCCTTTTTTGAAATCAAAAAGGACTT 2246 29 100.0 36 ............................. GAAGAAATTAGCGAAAGGATAAAAGCACACTTAGGC 2311 29 96.6 37 ........................G.... CTTTTAAAGGAACTTTTTCGATCACTATTTCTGATGC 2377 29 96.6 35 ........................G.... TAGATTGCGTTCCTAATGCTTTTATACTCTCTTAA 2441 29 96.6 36 ........................G.... TTTTCTAAAAGCATCTCTCTCTAACCAACCAGCAAG 2506 29 96.6 38 ........................G.... CTTCGTATCCTAAGATGCACTCTTCTGTTAGTACTTCG 2573 29 96.6 36 ........................G.... ATCGTATTCGGCCATTTATTCATACCCCAATTCTTT 2638 29 96.6 37 ........................G.... GCTTTTTTTGATTTAAATATTACCTTTCTTGCACGCC 2704 29 96.6 38 ........................G.... TTGATAAACAACCTTGCACCCTTCTTAATATACACCTG 2771 29 96.6 36 ........................G.... TCTGATAAATAAGCATAAATTTTAGCATTTTCAGTT 2836 29 96.6 37 ........................G.... GATTATATGGATCGAACTTGTCAATGGGCGTGATTGT 2902 29 96.6 36 ........................G.... TTTATAAGACTGATTAAACAAGCACAGATTTCACAG 2967 29 93.1 0 A.......................G.... | ========== ====== ====== ====== ============================= ====================================== ================== 24 29 98.3 36 GTTACATCTGAACCGTGTGGGTTATAAAG # Left flank : AGACGTTAGAGATTGGTTTATCAATAATTTAGTGATTTTTAATTGACTGCTTGATGGTTTGGCGAGATGATTTATAAGTCAGTGAAGCTAAGGTATTGGTACTGTGATTTTATTTTTTGATGTTTGATTTAAGCTTGTGTAGTGATGGTTTGAAAGGGATTTTTTGAAGAGTGAATGTAAGTACTTGGTGAATTAAACTTTTTGATTTTAGATTTTTTAGTTTTTAAATTTTTGAAAATTTGAAGTTTTTTATTTTAAATTTTTTTGAGATCGGCAAGTTAAAGAGTGATATTTGCAGCGGGCTTCTGAGTTTGTGGTTTTTGAAAGTTGGTTTGTGATAGGAAGTTAAAGGATAAAATATAATAATATATTTTCTGTATATCGAGGTTTGCTGCAAAAAACTTCAACTTGCAGGTTTTTTAAAAGTTTGGTATAATGTTTCATAACTTGGCAATTGAATAGGGTTTATGCGATTTTAATCTTGATTAAAAATTTAACGG # Right flank : TTCTTTTGAGTATTGATAAAATATTTGAGGTGTTAGAGTTA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCTGAACCGTGTGGGTTATAAAG # Alternate repeat : GTTACATCTGAACCGTGTGGGTTAGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 974-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000176.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 973 29 96.6 36 ....T........................ ACATGAGAGCACTAGTAAGGTGCTTTCTGTCTTACT CG,T [961,965] 905 29 100.0 38 ............................. GATTGAGGGGGGCTATAGAAGAGAAACAGCGGAACTTT 838 29 100.0 37 ............................. GAATATCATTAGCATTCTCTATATCCACACACTGATA 772 29 100.0 36 ............................. AAAGGATATTGAAGAAAACAATAAAAACGGAAAAGC 707 29 100.0 36 ............................. GCAGAAGAAGACGTGGTCGTTCTTTCATCTGATGAA 642 29 100.0 37 ............................. TTGGGAGATCTGACGCAAAAATTGACTATCTAAAAAT 576 29 100.0 38 ............................. GAGAGAGATTTAAGCATCAATGAAGTTGAGAATACTTT 509 29 100.0 39 ............................. TAAGCATGAGTGCTTCTTCAATAGCAAAAACTTACGACA 441 29 96.6 36 ....A........................ AGATGTGAATGGGTCTGACGCAAGAGATAAAAATTC 376 29 96.6 36 ....A........................ TCTTCAATTCTGTTGATTATTGTTGAAATAATCTGC 311 29 96.6 36 ....A........................ GCAGAAGAAGACGTGGTCGTTCTTTCATCTGATGAA 246 29 100.0 37 ............................. TTGGGAGATCTGACGCAAAAATTGACTATCTAAAAAT 180 29 100.0 37 ............................. ATATTAGAGACGTTTAGAGAGATAGAGGAGCTGAGTG 114 29 96.6 37 ....A........................ CGTCTCTAAATCCTTTATAAGGTATTTAAAACTATTA 48 29 96.6 0 ....A........................ | ========== ====== ====== ====== ============================= ======================================= ================== 15 29 98.6 37 CTTTCTAACCCACACGGTTCAGATGGAAC # Left flank : TAGTATTTGAATGGCTTTATTTATTTTACATAAAAAATAAGCCTGTGTATAGGTAATACTGCAATGGAGATATGAGATTTTTTTATTGGCTTTAGAAGTGAAAGAAGACTGCCAAAAGATGATGGATATAGAGGGTTTGATAATCTTTAATTCCTCATAGGTAGGCTACAAACAGAGACTTGATAAAAAGGAACTATCTAAAAATATAGTGTTTCAATTCCTCATAGGTAGGCTAATAACGTGTAGAGGAGCTACCCTGCGTTGATGATGAAGAATTGTTTCAATTCCTTATAGGTAGGCTACAAATTAAAAAAATATTATGGGGTAGAGTTTACTATTCTACGTGTCAATTCCTTATAGGTAGGCTAATAATCCCGCTAAATTTTAACTCAAAAATAAATTCGTAAAAACCTTATTCAATTGCCATCGTATAAAATATTATAACACATTTTTAAAAAGTTTGTAATTTAGACAAATCAATAACTTACTTATCTCTATTT # Right flank : CTTTGTTTTAGATATAGCAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTAACCCACACGGTTCAGATGGAAC # Alternate repeat : CTTTATAACCCACACGGTTCAGATGGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 10473-13347 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000009.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================== ================== 10473 29 96.6 34 ...C......................... GCAACAGAAGGAGACTCACAGAAAACTGGTGCAA 10536 29 96.6 36 ...C......................... TTTTTAGATAATAGTCCTTCAAAATCTTTTGATATT 10601 29 96.6 37 ...C......................... TTTATCTTGTCTCGGTGTTGGATTGGATTTGATCCAA 10667 29 96.6 37 ...C......................... ATTTAACAACATCTTTGACTTTTCAAGATAGCTCTAA 10733 29 96.6 37 ...C......................... TTTTGAGTAAAGAATATAAAGTTATACCTATAACAGG 10799 29 96.6 37 ...C......................... AGATTGGAATTTTTAAAACAGTTCCGGGTGGTGGATA 10865 29 96.6 37 ...C......................... ACATTATTTAAAGCAAGCAGTATTAATTTGTCTTCTT 10931 29 96.6 37 ...C......................... CCTGTCGCCTTGTTTGACTACGTAGTTAATGCATTGC 10997 29 96.6 37 ...C......................... TGTTATATATTTTAGTCTTCTGTGTTGAAACTGAAAA 11063 29 96.6 36 ...C......................... ATTAGTTCTACATTGTTAACTATAAAACGAGGTTCA 11128 29 96.6 36 ...C......................... CGAAATTAGACAGGGCGGTTTATGTAGATATAAAAT 11193 29 96.6 37 ...C......................... TTTCAGTCTCTCAAGATACCTTTCTATCAGTATCTTA 11259 29 100.0 36 ............................. AGGTCAATACCAAGTGTAGCAAAAATATAACCCTTC 11324 29 100.0 37 ............................. TAAGATTAATGATGAAGCTGTTTTTTTTGACAACCTT 11390 29 100.0 30 ............................. TGAGAAAAGAAAAAAAATAGATATATATAT 11449 29 100.0 39 ............................. TTGTTTGAAGACAGACTGATTGAGACAACAGATAAGGAA 11517 29 100.0 36 ............................. TAAAATAATTTTGAATGGGCTGTAACTAGGCTCAAT 11582 29 100.0 36 ............................. CCTATTCCTCAAGACCAAATTAATCAGCTTGTTTCA 11647 29 100.0 36 ............................. TCTTTCTCGATGGCGTTATTGAGCAACTGTTGTTGA 11712 29 96.6 37 ...C......................... GGTTCTGAAGATATAGAAAGGTATATAAAATTAGAAG 11778 29 96.6 36 ...C......................... TTCTTTGCGGGAATAAAATCCGACAAATTAAGGGGA 11843 29 96.6 37 ...C......................... TTTTTTGTAGGGCACCAGGACTCTGTCCACAGTGTGC 11909 29 96.6 35 ...C......................... TGAGAAGACTTTAGCAGAGGCAAAGAGAAAGAAAA 11973 29 96.6 36 ...C......................... CTTAGTGTGTAGTTAATCTTAATAAAATTATATTCT 12038 29 96.6 36 ...C......................... ATAGCTTATAAGGATTGTCAACATCTACATCTAAGC 12103 29 89.7 83 C..C.....................T... AGGTGAAATGTGAGACGTGAGATGTGAGACGGATTTAAATTCTTTTTACGTTTCACGTTCCACGTTTTACTTCTCACGTTTAA T [12126] 12216 29 100.0 37 ............................. AGATATTTTCCTCTACTATATTTAACTCCCCATAATT 12282 29 100.0 36 ............................. ATGGTCTTGCCTGTGCCTGTTTCCCAATTCAGGTAA 12347 29 100.0 37 ............................. GTTGTTTATCAACTCAAAATTCAAAATCTATCAAAAA 12413 29 100.0 38 ............................. TGCAGTAGATTTATCCAACCATCTTGAAGTCCCAATTA 12480 29 100.0 36 ............................. GACAATCACAGTTCTTGTTGTAGTTGGGTCTGATGC 12545 29 100.0 36 ............................. TCTTACTTGCTTCATTTGCCATATAACTTGCACTTG 12610 29 100.0 36 ............................. CACCATCTATACTACCTATAATACCAAAAACGGAGC 12675 29 100.0 38 ............................. ACCTGTGTCTGACTCTAATCTGATGGAATCATCATTGA 12742 29 100.0 37 ............................. GACCTTGCAATCTCAATAAAATCAGATGCACCTGTAA 12808 29 100.0 37 ............................. TAAGATTGAACCGTATTTATAAAAGCTAAATAAGATT 12874 29 100.0 38 ............................. TCGAAATAAGGATGTTCAAATTGAAGGTGAAGACTCTG 12941 29 96.6 36 ...C......................... TTCATTTATATATTCTTTAATTTCAAAAAAAATAAA 13006 29 96.6 36 .............T............... TTTTAAAAACACAATTATTAAAACAATCCTGATAAG 13071 29 100.0 37 ............................. ACGGACACAGACTTGCTTTATACTCTACTGAAATTAT 13137 29 96.6 83 .........................T... AGGTGAAATGTGAGACGTGAGATGTGAGACGGATTTAAATTCTTTTTACGTTTCACGTTCCACGTTTTACTTCTCACGTTTAA T [13161] 13250 29 100.0 35 ............................. TTAACTGGGTCAGATTTAACTTCAAAAGTTTCTTT 13314 29 93.1 0 ...C.....................G... | GTG,T,T [13330,13341,13343] ========== ====== ====== ====== ============================= =================================================================================== ================== 43 29 97.9 39 GTTACATCTGAACCGTGTGGGTTAGAAAG # Left flank : GACGTTGGAGATTGGTTTATCAATATTTTAATGATTTTTATTTGATTGTTTAATTGCTTGGTGAGATGATTTAATAGTCAGTAAAGCTAAGGTATTGGTAATGTAATTTTATTTTTTAATGTTTGATTTAAGCTTGTGTAGTGATGGTTTGAAAGGGATTTTTTTGAAAAGTGAATGTAAGTACTTGTTAAATTAAATTTTTTGATTTTAGATTTTTTAGCTTTTAAATTTTTGAAAATTTGAAGTTTTTTATTTTAAAATTTTTTGAGATCGGCAAGTTAAAAAGTGATATTTGCAGCGGGCTTCTGAGTTTGGGGTTTTTGGCAGTTGGCTTGTGATAGGAAGTTAAAGGATAAAATATAATAATATATTTTCTGTATATCGAGGTTTGCTGCAAAAAACTTCAACTTGCAGGTTTTTTAAAAATTTGGTATAATGGTTATTAGAATATTGATAGAGTAAGATATAAGCGATTTTATTTTTGATTAAAAATTTAGCGG # Right flank : GTGAAATACAAGATGTAAGAAGTAAGATGTTTCATAGAAACGGTGATAGCTTAAATAACGTTTCACGTATCACGTCTCATGTTTAACTTCTTATTTGAACCATTAAACATATAAACCAAAAGCAAAATAAAAAACGAAAATCCAAAAAGAATTGCTGAATAAATATGTGCAGATGTATAATCTAACTTTTCTACTGCATCATAAATTGCAATTGATACAACCTTTGTCTCTCCGTCTATACTACCACCAACCATTAGAACAACCCCAAACTCACCAACAGTATGTGCAAAGGATAATGTTATGCCGCTTAAAATTGACGGCTTTATGTTAGGAAGAATAACTCTAAAAAGCGTTTTTAGTTTAGATTTCCCGAGGGTATAAGATGCTTCTATCAAACTTTTATCAATACTTTTAAATCCAGAAACCAATGGATGAACCATAAAAGGAAAGCTAAATATTACTGAAGCTATCAAAATTCCCTCAAAATGAAAAGCAAGCTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.17, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCTGAACCGTGTGGGTTAGAAAG # Alternate repeat : GTTCCATCTGAACCGTGTGGGTTAGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 4-411 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABZS01000172.1 Sulfurihydrogenibium yellowstonense SS-5 gcontig_165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================== ================== 4 29 100.0 37 ............................. TGGTTTCCTTAATTGCATCGTTGAGCCTTTCTATCTA 70 29 100.0 37 ............................. ATTAATAGTATTAGCAATATCTTTAATGGTGGCTAAA 136 29 100.0 37 ............................. TTCTCTTAACTTTGAGTATCACTCTTCTGCTTATTTC 202 29 100.0 38 ............................. TTAAAAGTTCATATACAAGCATGTCTGACTTTTCTTTA 269 29 96.6 84 .........................T... AGGTGAGACGTGAGACGTGAGACGTGAGATGTGAGACGGATTTAAAATTCTTTTCACGTTTCACGTTTCACTTCTCACGTTAAA T [293] 383 29 89.7 0 ...C..................C.T.... | ========== ====== ====== ====== ============================= ==================================================================================== ================== 6 29 97.7 47 GTTACATCTGAACCGTGTGGGTTAGAAAG # Left flank : TTTG # Right flank : GAAGTAAGTATATTTTCAAGCTACTCTTGATTATTCAGCTTAGCCTGATATGGAAGTAATCTTTCCCATTCTATCTTGACATCTTTTAAATCAAAAACAACTTCACAAAAGAATAACCTCTTATTACACAATAAAACGCTATCTTTAAAATCTATGACTGAGACTGCTTGTAAAAATCAACGTTGTCATTCTGCAGCCTTGCGAAGAATCTCCTCCTTTTCTTTTCAAATCAAAAGACGAGATCCTTCAGCTTATAGCTTCAGGATGATACGGAAAGGTAAGCTTGCAAGAATTTTGGAACAGGCTCACCGTGTAGCCTAAAGGCTGTAAGAACTATTATTTTAAAAATCAAGCTTAAAGAAGAAAATTAGGTATCTGTCTTGAAATGATATTTGGAATGTGTAGTGATTCTAATTATTTTCAGCTTAATAAAAGCTTTATGACTTAAAATCTTTTTGAATATAATAAGATCCCTCCCACTAGAGGGAGGGGGAAAGAAA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.89, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCTGAACCGTGTGGGTTAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //