Array 1 2391-3296 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFYB01000052.1 Mannheimia haemolytica strain 535A contig00052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2391 32 100.0 36 ................................ CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 2459 32 100.0 36 ................................ CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 2527 32 100.0 35 ................................ CTTTTTCAAGAATCAAGATTAAGAGATCCAAACAA 2594 32 100.0 36 ................................ CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 2662 32 100.0 35 ................................ GTGGCACAGTAACACGAGCAGATGCTGATAAACGC 2729 32 100.0 34 ................................ CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG 2795 32 100.0 36 ................................ TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 2863 32 100.0 34 ................................ TGCGATTTTTGGATTTTTCGGGCGATAAATGATA 2929 32 96.9 34 .....................T.......... TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG 2995 32 93.8 35 G....................T.......... CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC 3062 32 93.8 37 G....................T.......... AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA 3131 32 93.8 35 G....................T.......... TTTATCTGTTGCGGTCAATTGTATATCTTGAATTT 3198 32 93.8 35 G....................T.......... CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG 3265 32 87.5 0 G.........T..........T.T........ | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 97.1 35 CCAGCCACCTACGCGTGGCTGCGAATTGAAAC # Left flank : TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA # Right flank : CGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCACCTACGCGTGGCTGCGAATTGAAAC # Alternate repeat : CAGCCACCTACGCGTGGCTGTGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //