Array 1 5326-8384 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCVI02000007.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0162 NODE_7_length_241527_cov_42.314559, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 5326 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 5387 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 5448 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 5509 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 5570 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 5631 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 5692 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 5753 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 5814 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 5875 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 5936 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 5997 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 6058 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 6119 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 6180 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 6241 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 6302 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 6363 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 6424 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 6485 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 6546 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 6607 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 6710 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 6771 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 6832 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 6893 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 6954 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 7015 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 7076 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 7137 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 7198 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 7259 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 7320 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 7381 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 7442 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 7503 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 7564 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 7625 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 7686 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 7747 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 7808 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 7869 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 7930 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 7991 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 8052 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 8113 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 8174 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 8235 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 8296 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 8357 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24930-27400 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCVI02000007.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0162 NODE_7_length_241527_cov_42.314559, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24930 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 24991 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 25052 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 25113 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 25174 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 25235 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 25296 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 25357 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 25418 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 25479 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 25540 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 25601 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 25662 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 25723 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 25784 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 25845 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 25906 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 25967 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 26028 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 26089 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 26150 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 26211 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 26272 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 26333 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 26394 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 26455 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 26516 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 26578 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 26639 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 26700 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 26761 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 26822 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 26883 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 26944 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 27005 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 27066 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 27127 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 27188 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 27249 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 27310 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 27371 29 100.0 0 ............................. | A [27398] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //