Array 1 44275-45217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHTU010000010.1 Salmonella enterica subsp. salamae serovar 1,9,12,46,27:l,w:e,n,x strain HAZEL-211 NODE_10_length_174282_cov_34.750326, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44275 29 100.0 32 ............................. GGTCGGATCAGCTGCGGCGGATAGTCCATTCA 44336 29 100.0 32 ............................. ATTAGCGGCGTTTAACGTCATCAGGTTTTCAA 44397 29 100.0 32 ............................. AGAACTGACTGTAGGTAGCATTGTTATTGTTC 44458 29 100.0 32 ............................. GGACGTCTTTTTATTTCATCTCCTTTTCTCGC 44519 29 100.0 32 ............................. GTTTAGGGGGAACAAATCCGGGGTGAGGAATA 44580 29 96.6 32 ............................T AGATGGCCGCAAGACTCAGACGCGGCGGATCA 44641 29 100.0 32 ............................. AGTATGCAAAGTTGATTCTGTCGAATAGCGGG 44702 29 100.0 32 ............................. TTTGCGCGTGAACGTGGCTCTTGCGGTCGAGA 44763 29 93.1 32 ...........................TA CTTTTTCGCCGGTTAACGGTTCAAAATCCTGC 44824 29 100.0 32 ............................. AGATTATCTACCAGGTCGCTGGGGGCCGGTGC 44885 29 100.0 32 ............................. TAAACCCCTGTTTATAATCTTTGCTCACCTTT 44946 29 100.0 32 ............................. AAAATACAGTGTGGGAAAAAAGTAAAAACAAT 45007 29 100.0 32 ............................. AAATCGAGACCGATAGGCTGGCGGCGCACCCG 45068 29 100.0 32 ............................. ATGGCTATTTCTCAAAACTTTAAAACGCAGGT 45129 29 100.0 32 ............................. GGGGCAGGGAGCCGCCTCAGTTGTACCAGGAA 45190 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGTATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTCTATTTTCTCTATACGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAACGATATACATTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTTTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCTGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61365-62066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHTU010000010.1 Salmonella enterica subsp. salamae serovar 1,9,12,46,27:l,w:e,n,x strain HAZEL-211 NODE_10_length_174282_cov_34.750326, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61365 29 100.0 32 ............................. TTGTTCATTGTTTGCTCCATAGCCCCGGCGAA 61426 29 100.0 32 ............................. CCTGAAATCGCAGCAAAACGCAGCGATACTGT 61487 29 100.0 32 ............................. CACTTCATGAACCGCGATACAGCGATTCACCG 61548 29 100.0 32 ............................. CGTTTTGCCGCTCTGCCACTGACCCGGTCGCC 61609 29 100.0 32 ............................. CGCACAGTGTCAGTAAGGAAGCGTGGGAAGTC 61670 29 100.0 32 ............................. TGACAATTTCAACGGGTAGCACGGTTGATCTG 61731 29 100.0 32 ............................. TTCGCGAGCCAGTGAGTAATCGTGAAATCGAG 61792 29 100.0 32 ............................. CGTTTTAAAAACATTTGTTAACTTTTAATATT 61853 29 100.0 32 ............................. TGGCAGGCGTTTGAGAGCATCTACCCGTCGCT 61914 29 96.6 33 ............................A GCGCGTCTAAAAAATGCGCCGTATTCACCTCCT 61976 29 100.0 33 ............................. ATGCCAAGCTCGTTCGCCTTGCTTGATGACCAC 62038 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACAGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCAGGGGTTTATGTTGGCGATACATCGAAACGCATTCGAGAGATGATCTGGCAACAGATTACACAACTGGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCCCTTGAAAATCAATGAGTTGAATGTTCTTTAATGATAAGGAATTGTTATCTTAACGTTGGTAGTTTGTTGAGCAGTAAAAAATCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGACTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCGCTCATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 643634-645431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHTU010000001.1 Salmonella enterica subsp. salamae serovar 1,9,12,46,27:l,w:e,n,x strain HAZEL-211 NODE_1_length_1238135_cov_29.399043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 643634 29 100.0 32 ............................. GCTCAAAAATCAGTTACAGACAATACTAACGC 643695 29 100.0 32 ............................. TCTTTGACGCTGGCAATCGCCACGTTGTAGAG 643756 29 100.0 32 ............................. CTGCATACTCCAGCAATTGTGCGGCGGCGTTC 643817 29 100.0 32 ............................. GCCCAGGTCATTTTTAATGAGGAATGGATAGT 643878 29 100.0 32 ............................. ATCCGCTGAAATCCCGGTGGATAACATACCGA 643939 29 100.0 32 ............................. AGCTGCGGGACGTTGAAAAGGACGGCTGCGGC 644000 29 100.0 32 ............................. CCAGTTCTTGGCCTCGTAAATATCGCCCTGTT 644061 29 100.0 32 ............................. CCAGATACCGCGATCTGTGCGAAAGCGTTTAT 644122 29 100.0 32 ............................. GGGATCGACTGGGCCAAGTCCGCAATTATGGG 644183 29 100.0 32 ............................. TAACTTTGTGTCGCTGCATACGGCAAAGAGTA 644244 29 100.0 32 ............................. TTGACGTAGTTAGCGTGGATGATGTCGGTTAT 644305 29 100.0 32 ............................. GGGCGACCTCCGTTAAATTATTTATTTGAAGC 644366 29 100.0 32 ............................. GCTTTGGCCTACATTCACTGCAAAACTTTGCT 644427 29 100.0 32 ............................. AAACAACGCTGTCCCAGATGCCGATGACGGAT 644488 29 100.0 32 ............................. TTCATCCATACGCTCACTGAATCCACGCTCCC 644549 29 100.0 32 ............................. GAAAAACCGGATGTACAGGACGGGCTTGCTGC 644610 29 100.0 32 ............................. CGGCTGGTTAGACGTTATCCGGGTTCAAATCC 644671 29 100.0 32 ............................. CTGTTATCATTGTTATTATCACTGATTTTATT 644732 29 100.0 32 ............................. CGATCAAGATGGATAAGCGCCTCTTCGCGGGT 644793 29 96.6 32 ...........................T. CCGAAATTGCTCAGAAAGTTTCCACCGCAGTA 644854 29 100.0 32 ............................. GCCACGACGCCTGACCCCATCGGGACAGACTT 644915 29 96.6 32 ..........T.................. CGACCTGTTCCGGAAATACCGCGCCCGCCGTG 644976 29 100.0 32 ............................. CGACGCTTCCATCGTCTGACAGGCCTGCTCGT 645037 29 100.0 32 ............................. TTGCTCATTGGGCTCCCCCCTCAAACAAAACC 645098 29 100.0 32 ............................. TTGTAGCCTTTCCAGTTGAGTTTGCATTGTTC 645159 29 100.0 32 ............................. TAATGCTGGCCACGACAGCGCAGCAGATTACA 645220 29 96.6 32 .........T................... CAGTGAAACGCGCTGTCGCGTATGTTGGGTTC 645281 29 100.0 32 ............................. GCCGCATCAACGCCAAACGGTTTAAATCCTCC 645342 29 100.0 32 ............................. ATACTGCGCGTTTCTGTAGCGCCGTAATTCAG 645403 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGCTCATCCCGTATCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTTGCCGACGATATGCGCAAAATCTTACTCCCCCTTGATGTGATGATGTATTAATCTCCGAGTTTTCCGTCATATGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGTGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGCATGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GGTCAGGAGGTGATTCACTTGGTACTGGCTGATGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCATAAATGCCTTATCCGGCACCGATCTTATCTCGGAGTTGCATCGAACCTTCTCATCCTTCCCGTACAGAGAGATATGAGACACTATGCTTAACGGGGATAAGATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTTCCCGTACGGAGAGATATGAGGCAGTGTGCTTAATGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCGGGGGTAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //