Array 1 408813-409080 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGLV010000005.1 Photobacterium damselae strain 9045-81 Contig5_9045-81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 408813 28 100.0 32 ............................ TAGACCTATTGCGCCGATGCGAGGCAGAAGAT 408873 28 100.0 32 ............................ TTGGCCCCTTTAGGCTCAAAGCCAAGTTTCTT 408933 28 100.0 32 ............................ CGCTTTGTGCAAACGCACTGCCTGCGCAAGGG 408993 28 100.0 32 ............................ GTTTTGTATGGCAATGGCTTACGACCTGCTCC 409053 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTGACCTGCCGTATAGGCAGCTGAGATA # Left flank : TTAAAATGATGGTGAGTGACAAAATTTTTGCTGTTTCTTCAATATATAATGTGCCTGAAGGGATTCCTGAAGTTAGGTTCATTAGAAATCAAAATATAGCTAAATGTTTTACAGGCGAAAAACGACGACGTCTAGATAGATCTAGGCGTAGAGCTATTGCTAGAGGTGAAACATTTGAGCCCCAAAATGATTTTAAACAGCGAGAGATTGGCTTATTTCATCGTATTTATATGAGTAGTAAGAGTACAAATAAATGTTATTTGTTGCATATTCAGAAAGAGCAAACAGATTTGGCAAGACATGATTTTAACTCTTATGGATTTGCTACGAATAAACAATATCAAGGTACTGTCCCTGACTTTTCTCATGTTACCTATTTTTTTTCTTGAAAATAATAACCTTATAATTCAATCGCTTGTTATAAGTTATCGTAAAAAGGTTTTTTGAGCATAATCTTGGTAATTATATGAATTATTGAATTTTTTGGTCTAAACTTGATA # Right flank : AAACGAAGAATAAGTTATAGCTCCAGAATCAATATAAAACCTGCCGAGAAGGCAGTAATCGTTGTAAAGTCCTCGGCATTTAAAGAGGCTTTTGCATTGTTGACATGATATTCAATCGATATAAATATAAGCTTTTATATTTTTTAAAATAAGACGTGAACATTGCATTCACGTCTTATATGTGAGTAATTATTTTTTTTGCCTGAGATTCTTAGAACCTATCCCAAAAGGGATTTATTCCAAACAATGAGGCCACAAGCAAAATGCAACATGGCCTCGTAGTTTTCGATTTTCTTTTCCCAACGAACAAGCAATCTACGATAACGGTTTAGCCAGCTATGAGTTCGCTCTACAACTGAAGTGGCATAGTGAATTTGGTCACGGTTTTAGAGTTTTCCCAATATAGTCGTTCTGACTCATTGGGAGTTAGGCCGCCATTATACTGATGAGGCCTGAGTTGGCAGTAATATCCGATAATATTGCGGGTGATCTCTTGTTGA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCTGCCGTATAGGCAGCTGAGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 2 906473-907580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGLV010000005.1 Photobacterium damselae strain 9045-81 Contig5_9045-81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 906473 28 100.0 32 ............................ TTCAAGCCCATAATCAAGTAGAACGTTTTGTA 906533 28 100.0 32 ............................ TATCTATATTTGATATTGTCATTGCACCCACA 906593 28 100.0 32 ............................ TAGCATTTGCTTGATCTCTGCAAGTTGGTCTT 906653 28 100.0 32 ............................ CGAAGGTTGGCTATCGTTGTGTTGTATCCTGT 906713 28 100.0 32 ............................ GCTGTTTCAGTGCTGATAGTTTGCTGTGTTTC 906773 28 100.0 32 ............................ AAGATGTAATGATTGGAGAGGTTAACAGCCAG 906833 28 100.0 32 ............................ GCTAGAACGTCTGATGTTATTAAACCAACTAC 906893 28 100.0 32 ............................ CAAAACAGGAGCCAGAATAAAAACTTCTCGCT 906953 28 100.0 32 ............................ AGAAAAAGTTTCTAGCCATAGCCAAATCTTTT 907013 28 100.0 32 ............................ TGCTGGTACTGTTGCGACTCTATCAGCTATTG 907073 28 100.0 32 ............................ TAAAACACTTGGAGCAACAAATGAACGACAAT 907133 28 100.0 32 ............................ AGAAAAAGTTTCTAGCCATAGCCAAATCTTTT 907193 28 100.0 32 ............................ AAAAAGCAATGTTTCTTGCAAGTCAGGCGGCA 907253 28 100.0 32 ............................ AAATAACGCGCAGCCATACATGACAATCGGAA 907313 28 100.0 32 ............................ TCACAAATCTACAGTCAACCTCGCCATATACA 907373 28 100.0 32 ............................ CAAACCAAACAAATCAAATAGTTTCGCCATTC 907433 28 100.0 32 ............................ ATGATAAAATTGAGCTAACTAATGTTATTGCA 907493 28 100.0 32 ............................ AATCCCACTAAGCCATGAGCTATTTAGTGGGA 907553 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 100.0 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTGTAGATCTAAAAGTCTCAAAATGTCATCTAATAATCTTTATTTTGATTCTTTTTGTGATTATTTTAAGCTGGATTCAAAAGGGAACAAAAAGTAGACGGTTAAGTTCAAGGAGTGATCATGTCTTCAATACCAACAACAAAAGAGGAATTGGAAAAAGCAATTAATGATTCTTTTTCTAAATTACTCATAGACTTAAAAGCAATACCTGAATCTGAATCGCGGACACATTCTCGTCATTATCTAATCATCAACTCTATCAAGAACCATGGTACGAAAAATGGACGTTAGGGCGAATGATTCAGTTTAATACCTCATCGCCAATGAAAAATGTAAGAACTAAGGTACGAAGATTTAAAAGAGGGATGTGACCCTATTTTTTGACTTATTTATAAGTTATTGATTTATAAATATGTGAAATAGGGCGCAGAAAAAAGGGTATTTTAGAATAAAGTGGTCTAAGTTCTTTAAAAATAAACCGAAATCGAATAAAGTCTTCA # Right flank : ATGCAGGCAGAAATTCGTAATGGTTTGAACCTGCTTCACTACCGAATAGGTAGATAAAACTTAGACATATTTCACTCTTTAATCTGACATTTCGTCATTCTTGCCAATAAAGTCGCATTTTAAATTCATCCGGTTGAATATACTAATGCCATAATAGTTAACGCATTGATATGATGTTGAAGATGAAAAAGGACTTTTCTCCTAGCGAGCTTAAAACCATACTCCACTCAAAACGTGCCAATCTTTATTATCTTCAGCATTGTCGAGTGTTAGTAAACAGTGGGCGAGTTGAATATGTTACTGATGAGGGTAAAGAGAGTTTATATTGGAATATCCCCATCGCCAATACGACCGCCATTATGCTTGGAACGGGTACATCGGTGACTCAAGCTGCTATGCGAGAGTTGGCTAAAGCTGGTGTATTAGTCGGTTTTTGTGGTGGCGGTGGTACTCCGCTTTTTTCTGGTAATGAAGTTCAAGTGGATGTCTCTTGGCTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 916029-916777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGLV010000005.1 Photobacterium damselae strain 9045-81 Contig5_9045-81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 916029 28 100.0 32 ............................ CAAAACATTTCATATTCTGGAAGGTGATCGTC 916089 28 100.0 32 ............................ GTTATGGGCTGATGAGAACTTGAGTAAGTCTT 916149 28 100.0 32 ............................ GTTTGACATTACTCCGTATCCGCACACCCAAT 916209 28 100.0 32 ............................ AACTAAAGAGGATAAGAAACCATGAACTCTAC 916269 28 100.0 32 ............................ AGATGCTTGTTCATTTTGATTGTTCCGCTTTC 916329 28 100.0 32 ............................ CAAATAATCTATTAACCTCGCAGCAAGGTATG 916389 28 100.0 32 ............................ ACACTATAAAGAACATGGACATAAACCAGTAA 916449 28 100.0 32 ............................ TTACTTTTCCAGTCTTTTTGGTTAGCAACCAA 916509 28 100.0 32 ............................ TGAGCCTCTGACAACCAATTAAAGCCTTTTTC 916569 28 100.0 32 ............................ ATTGAATCGCTCAATCTCAACCCAGCAATCAT 916629 28 100.0 32 ............................ TATAAGCAGAATGATCCATTAAAACCCATGTG 916689 28 100.0 32 ............................ TTTTAATGTTAGTAATTCAAAAGGTTTAACTT 916749 28 78.6 0 .......A...CA........A..CT.. | C [916769] ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.4 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GATGAACTAATGGCTTTACCTTGGTTGAAAGGTTTGCGTGATTACACCAAAGTTAGTGCAATCTTACCAATACCTCGTGATATTGCAGGGCATCGCACTGTGCATCGCGTACAAAAAAAGAGTCCTCATAATTTGCGTAAGCGTGCGGTAGCAAAAGGCCGAATGACTGAACAAGAGGCTCTGACGAACATCCCTGATGCGTTACAAGAAAGATTAGCTTTACCTTTTATCCAGATGCAGAGTTTGTCGAATAAGCAGGTAATGCGTATTTATGTTGCGCTAGGAGAGATTCAATCAGAACCTGTTTTGGGTGAGTTTTCTAGCTATGGTATGAGCCGCACGTCGACCATTCCTTGGTTTTAATCTGTAGACCCTTTTTTTAAGCTTATACTTAACTTATTGATTTATAAATCATATTGTAATAGGTGAGAAAAAAGGGTTTTTTATTGAAAAATGACTTAAGCTCTTTAAAAATAAACCGAAATCGAATAAAGTCTTCA # Right flank : AGTAAACTTTGGAGCTAACCTTTGCTTTTGGTATCCTTGGTGCTTATCGCTAAGATCATTAGCAAAAGTATAAACATAGGTACTACATGCTCACAATCTCAAACAATGTGACGATTTCCGATTGGGAGATTGAACTTAACGCTATTCGCTCTGCGGGAAATGGTGGGCAAAACGTCAATAAAGTAGCCACAGCAATTCATCTTAGATTTGATATTAAGAAATCATCACTGCCAGCTATTTATAAAGAAAAATTACTTAAGCTATCAGACAGTCGAATTTCTTCTGATGGTGTGATCATCATTAAATCGCAGCAATATCGAACCCAACTGCAAAATAAAGAAGCTGCTCTTGAGCGATTAAAAGAATTGATTTTATCTGCGATGGTTGTACAAAAAGCCCGTCGTCCAACTAAGCCAACTAAAAGCTCCCAACGTCGTCGTTTAGAGTCAAAAACCAAAAGGGGATCGACTAAAACGATGAGAAAGAAGGTTGATTATTAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //