Array 1 37028-38195 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSNJ01000022.1 Pseudomonas aeruginosa strain PA-W28 IPC1290_22.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37028 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 37088 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 37148 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 37208 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 37268 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 37328 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 37388 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 37448 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 37508 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 37568 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 37628 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37688 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37748 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37808 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37868 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37928 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37988 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 38048 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 38108 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38168 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48248-46720 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSNJ01000022.1 Pseudomonas aeruginosa strain PA-W28 IPC1290_22.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48247 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 48187 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 48127 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 48067 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 48007 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 47947 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 47887 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 47827 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 47767 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 47707 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 47647 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 47587 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 47527 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 47467 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 47407 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 47347 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 47287 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 47227 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 47167 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 47107 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 47047 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 46987 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46927 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46867 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 46807 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46747 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 107668-108535 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSNJ01000018.1 Pseudomonas aeruginosa strain PA-W28 IPC1290_18.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 107668 27 100.0 33 ........................... TGACCGCGCCGATCTCGATAGCTTCCATGAACT 107728 27 100.0 34 ........................... TAGGTGGCTGCCGCGTAGTGCGCCTCGAGCATGG 107789 27 100.0 33 ........................... TAGGTACAGGTAGTTCAGCATGAACAGACTGGC 107849 27 100.0 34 ........................... TCATACCCATGGGGGCGCCGGGGTGGCCGCTGTT 107910 27 100.0 33 ........................... TAAGTCGGTCGATCAGGTGACTAATCTGCCCAG 107970 27 100.0 33 ........................... TGTGCTGAGCCAGCCAACCGATCTGCTGCTGCC 108030 27 100.0 34 ........................... TAGGAAGATGCCACTGCGCTGGCTGCCTTGGGTG 108091 27 100.0 33 ........................... GAGGCTGGCTGCCAAGGGCAAAGCTATCCATTC 108151 27 100.0 33 ........................... GTGCGATAGTCAGCGCACTGACGATTGCAAGCA 108211 27 92.6 31 ...........C.............G. CTGCGGAATCGTTGAAGACGGCTGCGAAACT 108269 27 85.2 33 .......A....A.G..C......... GTACGATCTCGGGAATTTGCGTATCTGGGATAC 108329 27 85.2 32 A...........C....C.....T... AACCAGTGGGGCATCGTCATCGGACGGCTTTT A [108351] 108389 27 88.9 33 ..A.........C...........T.. GCATAAGCAGGAAATGGGAGGTGAGCCCTGTTT 108449 27 74.1 33 ..A........C.....C..T...GGA AATAATCGACCGATCTAGGGGCAGACGGGCTAG 108509 27 85.2 0 .......C.T.......C..T...... | ========== ====== ====== ====== =========================== ================================== ================== 15 27 94.1 33 GTGTGCCGCCGTGTAGGTGGCTTGAAG # Left flank : TCAAAGACGCTTGCGTCATGCCGACAGCTTTTCGCAGTGCCGCGCTCGGCGACGACAGGGCCGAATTTAGGGCCAAGTGCATTGCTGTCTTCGATAAATACCGGGTTTTGGAAACCATGATCGAAACAATTAAGGACGCTTGTGATTGTCATCGCCGTTGATGAGAGCCAAAAGCGTTCGCTGAGGAGATCCAGGCGAGTGTTATCCAAATGGCTCAGCCAAATAGGCTCTCGCACATGGACTGGGAGCCTAAGCCAAGAGGGTATCCAGCAGATGCGCAGCGAGCTTGCAAAGGCAGCGAGTAAAACCAGTGCTGTGGCCGTTTTTGCTGTGCGATCAGGGCGCAGAATGACTCTTTTGTTCTTCTGTGGTGCTCGAACCGATTGGGATGAAAATGGCTGGTTTTCTCATAAATCTATCAGCGCAAAATGCCTCATTGATAGTGACTATTTATTGAAGCAAGTGATTGAAAAATAGAAAGTAATCGCGGATTTATAACA # Right flank : GGCGTATGTTTCGAGTAGCCCAATAAGCTCGAGTCAGCGCCGTTTTTTGGGGTTCAACAGTGTTGCGCGATAAGCCTCGCCCTTCAGGGCAGTGAGGATGTCAACGATACAAAGAATTACTGACCAATAAACACCGCTTCAACTGCCGCCAAGGCTTGGCGCGCGCCTTCAAGCTCCGGCTGAATCAGTTTTAACCCTCCCAGATCGTTGTTCATTACCGACACGCAATCTTGAAGCGCTTTTTGGGCTTCAGCGAGAGCAGCCAGCAGAGCTTCGTTTTTGCGATCCACAGCCGCTGGCGCTCCGTCTACTACGCTGAGGCGCTTGCTGAGAACGAAGTAGATGTGCGGGAACACCAACTCTGAGACAACGCCCGCGTTCTTCGCTGTTTTTGCTGACGCCTCTTCAACGATAGAGATCAGTTCTGCCTTGTGGATCGGGTTGAATAGCTGCATGTGGTGGCTCCCAGTGATTAATGCTCCCAGGATGCCGACCATCCC # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGCCGCCGTGTAGGTGGCTTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //