Array 1 50616-50780 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992817.1 [Clostridium] symbiosum ATCC 14940 Scaffold1350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 50616 32 100.0 35 ................................ GATGGTATAGCCAAAAGAACCAGCCACCGGAGCCA 50683 32 100.0 34 ................................ GTCAAACAGCCCCATCTCCGATATTTCCTTACCC 50749 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 35 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : TGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGGATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGCGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAATACTCTAAAACCATGAATTTTTGCTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCTCGTAAGAGCCTGTGGATCGAAACCGCATACCCCTTTAGCCGTTTCTCCTGACCGTC # Right flank : CGTCCTGAATCACTGCCTTCATCCTTTTTTCACAGGTCAGGCTCGTAAGAGCCTGTGGATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCTCGTAAGAGCCTGTGGATCGAAACCTTAAATGTCAATTTAACGGATTAAATGGTTCGTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTTCTAGGTTTGATATAGTTATCTTCATCCGACGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAGTCATAGAGTCATTGACAGTAGCCGCCAGGGCGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCCCTTTGGAAAGGCACCTGTCGTGAGATGGGTGCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACATAACTTAAGTAATCAGCCGTATAGAGTGCTTTTGGTCAGGCTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 51007-51433 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992817.1 [Clostridium] symbiosum ATCC 14940 Scaffold1350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 51007 32 100.0 33 ................................ CTTCTAGGTTTGATATAGTTATCTTCATCCGAC 51072 32 100.0 34 ................................ AGTCATAGAGTCATTGACAGTAGCCGCCAGGGCG 51138 32 100.0 34 ................................ CCCTTTGGAAAGGCACCTGTCGTGAGATGGGTGC 51204 32 100.0 34 ................................ ATAACTTAAGTAATCAGCCGTATAGAGTGCTTTT 51270 32 100.0 35 ................................ CGTGTTCAAACGAAAAGGTATCCCATAACCAGTCT 51337 32 100.0 33 ................................ AGTTGGGTGCTGCAAGGTATCAATTTTCCCGGC 51402 32 93.8 0 ..............................NN | ========== ====== ====== ====== ================================ =================================== ================== 7 32 99.1 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCTCGTAAGAGCCTGTGGATCGAAACCGCATACCCCTTTAGCCGTTTCTCCTGACCGTCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGATGGTATAGCCAAAAGAACCAGCCACCGGAGCCAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGTCAAACAGCCCCATCTCCGATATTTCCTTACCCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGTCCTGAATCACTGCCTTCATCCTTTTTTCACAGGTCAGGCTCGTAAGAGCCTGTGGATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCTCGTAAGAGCCTGTGGATCGAAACCTTAAATGTCAATTTAACGGATTAAATGGTTCGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGATCACGCCATAGTCTACTGTCATATCGCCACAGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTGTCCGCCTTCGCTAGCCATTAGCCCTAGGAATGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCATGATGTAATTGAAAATCTCCATTTGGGATTCCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGCTCGTAAGAGCCTGTGGATCGAAACATCCCAGACTGCTTTTAAGCCATCCCAGAGTTTAGGTCAGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 51597-51760 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992817.1 [Clostridium] symbiosum ATCC 14940 Scaffold1350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 51597 32 100.0 34 ................................ TGTCCGCCTTCGCTAGCCATTAGCCCTAGGAATG 51663 32 100.0 34 ................................ CATGATGTAATTGAAAATCTCCATTTGGGATTCC 51729 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 100.0 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : TCGAAACAGTCATAGAGTCATTGACAGTAGCCGCCAGGGCGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCCCTTTGGAAAGGCACCTGTCGTGAGATGGGTGCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACATAACTTAAGTAATCAGCCGTATAGAGTGCTTTTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCGTGTTCAAACGAAAAGGTATCCCATAACCAGTCTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAGTTGGGTGCTGCAAGGTATCAATTTTCCCGGCGGTCAGGCTCGTAAGAGCCTGTGGATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGATCACGCCATAGTCTACTGTCATATCGCCACAG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGCTCGTAAGAGCCTGTGGATCGAAACATCCCAGACTGCTTTTAAGCCATCCCAGAGTTTAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAGGTCTACGCCAATGCCGGCGCCGGGACCTACGAGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCCACTCCCGGAAAAGGTTAATCCAATCATCCAGGCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCATATGTTCCTCCTAAATCGCAGGGAGAATCAGAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCATGCATTCATCGGAGTGATCCAGAATCTCCACAGGTCAGGCTCGTAAGAGCCTGTGGATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 51859-52222 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992817.1 [Clostridium] symbiosum ATCC 14940 Scaffold1350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 51859 32 93.8 34 NN.............................. ATCCCAGACTGCTTTTAAGCCATCCCAGAGTTTA 51925 32 100.0 35 ................................ AGGTCTACGCCAATGCCGGCGCCGGGACCTACGAG 51992 32 100.0 35 ................................ CCACTCCCGGAAAAGGTTAATCCAATCATCCAGGC 52059 32 100.0 34 ................................ CATATGTTCCTCCTAAATCGCAGGGAGAATCAGA 52125 32 100.0 34 ................................ CATGCATTCATCGGAGTGATCCAGAATCTCCACA 52191 32 93.8 0 ..............................NN | ========== ====== ====== ====== ================================ =================================== ================== 6 32 97.9 35 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GGATCGAAACAGTTGGGTGCTGCAAGGTATCAATTTTCCCGGCGGTCAGGCTCGTAAGAGCCTGTGGATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGATCACGCCATAGTCTACTGTCATATCGCCACAGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTGTCCGCCTTCGCTAGCCATTAGCCCTAGGAATGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCATGATGTAATTGAAAATCTCCATTTGGGATTCCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTTCCTGCTACTTAAATACTTTGGCTTCTTTTAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTTTCGATTTTCGTTTATGTTTATGTCTTTTAATGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTTAATCCACAAATTTATTTCGGCCACGCTTGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCGTCAATAGCTGTGTGTAATGAATTGGCGCCTTAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGTCAGGCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 52384-52611 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992817.1 [Clostridium] symbiosum ATCC 14940 Scaffold1350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 52384 32 100.0 34 ................................ TTTCGATTTTCGTTTATGTTTATGTCTTTTAATG 52450 32 100.0 32 ................................ CTTAATCCACAAATTTATTTCGGCCACGCTTG 52514 32 100.0 34 ................................ CGTCAATAGCTGTGTGTAATGAATTGGCGCCTTA 52580 32 96.9 0 ...............................N | ========== ====== ====== ====== ================================ ================================== ================== 4 32 99.2 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : TCGAAACATCCCAGACTGCTTTTAAGCCATCCCAGAGTTTAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAGGTCTACGCCAATGCCGGCGCCGGGACCTACGAGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCCACTCCCGGAAAAGGTTAATCCAATCATCCAGGCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCATATGTTCCTCCTAAATCGCAGGGAGAATCAGAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCATGCATTCATCGGAGTGATCCAGAATCTCCACAGGTCAGGCTCGTAAGAGCCTGTGGATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTTCCTGCTACTTAAATACTTTGGCTTCTTTTA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACACTGATTTTATGTTCTGCCGTTACCTGGCCCGCATGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCCGGCCTATCAGGGATAGAAAGACAGGGAAGCGATGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACATAGACACCATCAAAGCTACCGTTTTACAGGTCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAATGAAGCTCTGTTTGATTTCGTATCCAAAATACGGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 52713-52878 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992817.1 [Clostridium] symbiosum ATCC 14940 Scaffold1350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 52713 32 100.0 35 ................................ ACTGATTTTATGTTCTGCCGTTACCTGGCCCGCAT 52780 32 100.0 35 ................................ CCGGCCTATCAGGGATAGAAAGACAGGGAAGCGAT 52847 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 36 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GGATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTTCCTGCTACTTAAATACTTTGGCTTCTTTTAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTTTCGATTTTCGTTTATGTTTATGTCTTTTAATGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTTAATCCACAAATTTATTTCGGCCACGCTTGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCGTCAATAGCTGTGTGTAATGAATTGGCGCCTTAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC # Right flank : CATAGACACCATCAAAGCTACCGTTTTACAGGTCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAATGAAGCTCTGTTTGATTTCGTATCCAAAATACGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGCCGTTCAAACAACTTCGTTACCGGGTTGAATTTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCCTTTGTGGTGTACCTATACCCCGGAACCAACAATGGTCAGGCTCGTAAGAGCCTGTGGATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCAGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 53042-53272 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992817.1 [Clostridium] symbiosum ATCC 14940 Scaffold1350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 53042 32 96.9 34 N............................... AATGAAGCTCTGTTTGATTTCGTATCCAAAATAC 53108 32 100.0 34 ................................ GCCGTTCAAACAACTTCGTTACCGGGTTGAATTT 53174 32 100.0 35 ................................ CCTTTGTGGTGTACCTATACCCCGGAACCAACAAT 53241 32 93.8 0 ..............................NN | ========== ====== ====== ====== ================================ =================================== ================== 4 32 97.7 35 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : AAACCGTCAATAGCTGTGTGTAATGAATTGGCGCCTTAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACACTGATTTTATGTTCTGCCGTTACCTGGCCCGCATGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCCGGCCTATCAGGGATAGAAAGACAGGGAAGCGATGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACATAGACACCATCAAAGCTACCGTTTTACAGGTCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGCATTGTTAGTTGCATAAATGAAGTTGTAAGGATGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAACTGCCTTTATAGCCTCCTGCGGTATCTGCCCGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGTCACCGTCAAATTCAAAAAGGAGGGCGAAGGCTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACATCCGGAATCGAACCGGAACCCATGGCGCGACCCTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 53371-53667 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992817.1 [Clostridium] symbiosum ATCC 14940 Scaffold1350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 53371 32 100.0 34 ................................ GCATTGTTAGTTGCATAAATGAAGTTGTAAGGAT 53437 32 100.0 34 ................................ AACTGCCTTTATAGCCTCCTGCGGTATCTGCCCG 53503 32 100.0 34 ................................ GTCACCGTCAAATTCAAAAAGGAGGGCGAAGGCT 53569 32 100.0 35 ................................ ATCCGGAATCGAACCGGAACCCATGGCGCGACCCT 53636 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 100.0 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : ATCGAAACATAGACACCATCAAAGCTACCGTTTTACAGGTCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAATGAAGCTCTGTTTGATTTCGTATCCAAAATACGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGCCGTTCAAACAACTTCGTTACCGGGTTGAATTTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCCTTTGTGGTGTACCTATACCCCGGAACCAACAATGGTCAGGCTCGTAAGAGCCTGTGGATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTTTAAATCTTCATACAAAATTTTTATTCTTCGAAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAGGGAAGACACAAAGTTTTTAAGAGGTGATGGCTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCCTTGTATAGAAGTGCGTCAGTATCTTTGTTTCAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAGTCTTATCCCATGTATCTTTATCTTCTATAATGGTCAGGCTCGTAAGAGCCTGTGGATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 53767-53997 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992817.1 [Clostridium] symbiosum ATCC 14940 Scaffold1350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 53767 32 96.9 35 N............................... CTTTAAATCTTCATACAAAATTTTTATTCTTCGAA 53834 32 100.0 34 ................................ AGGGAAGACACAAAGTTTTTAAGAGGTGATGGCT 53900 32 100.0 34 ................................ CCTTGTATAGAAGTGCGTCAGTATCTTTGTTTCA 53966 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 99.2 35 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : CGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGCATTGTTAGTTGCATAAATGAAGTTGTAAGGATGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAACTGCCTTTATAGCCTCCTGCGGTATCTGCCCGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGTCACCGTCAAATTCAAAAAGGAGGGCGAAGGCTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACATCCGGAATCGAACCGGAACCCATGGCGCGACCCTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAGTCTTATCCCATGTATCTTTATCTTCTATAATGGTCAGGCTCGTAAGAGCCTGTGGATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCTCGTAAGAGCCTGTGGATCGAAACCGCATTCCCGGCCATCATGGATCAGACCATCCGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTAAGTTACAATTGCGAATTCTTCCGCATATAAAGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCCCGTCAATCCCGGAGAAGACCATCCAAGAGCCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCGCGAACAGCAATGCTTAGCTGCGTATAGCCAACCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCGTTTCCCGGATTATGAACAAACTCTATCCCCACGGTCAGGCT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 54223-54585 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992817.1 [Clostridium] symbiosum ATCC 14940 Scaffold1350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 54223 32 100.0 35 ................................ CTAAGTTACAATTGCGAATTCTTCCGCATATAAAG 54290 32 100.0 33 ................................ CCCGTCAATCCCGGAGAAGACCATCCAAGAGCC 54355 32 100.0 35 ................................ CGCGAACAGCAATGCTTAGCTGCGTATAGCCAACC 54422 32 100.0 34 ................................ CGTTTCCCGGATTATGAACAAACTCTATCCCCAC 54488 32 100.0 34 ................................ GGCGGATGTAAAGAAGCGTTCGCGGTATTTCTGC 54554 32 96.9 0 ...............................N | ========== ====== ====== ====== ================================ =================================== ================== 6 32 99.5 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTTTAAATCTTCATACAAAATTTTTATTCTTCGAAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAGGGAAGACACAAAGTTTTTAAGAGGTGATGGCTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCCTTGTATAGAAGTGCGTCAGTATCTTTGTTTCAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAGTCTTATCCCATGTATCTTTATCTTCTATAATGGTCAGGCTCGTAAGAGCCTGTGGATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCTCGTAAGAGCCTGTGGATCGAAACCGCATTCCCGGCCATCATGGATCAGACCATCCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTACCTGCCGTTCGGCATCTTTAAGGGCATTCAGCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGGACGTGGTAGACGAAATGAAGGCCGAAGCAAAGGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGCGAAGTATTCGATATCAGCAAGGCAGTTTGTTCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 54687-54917 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992817.1 [Clostridium] symbiosum ATCC 14940 Scaffold1350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 54687 32 100.0 34 ................................ TACCTGCCGTTCGGCATCTTTAAGGGCATTCAGC 54753 32 100.0 35 ................................ GGACGTGGTAGACGAAATGAAGGCCGAAGCAAAGG 54820 32 100.0 34 ................................ GCGAAGTATTCGATATCAGCAAGGCAGTTTGTTC 54886 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 35 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : AACCGCATTCCCGGCCATCATGGATCAGACCATCCGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTAAGTTACAATTGCGAATTCTTCCGCATATAAAGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCCCGTCAATCCCGGAGAAGACCATCCAAGAGCCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCGCGAACAGCAATGCTTAGCTGCGTATAGCCAACCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCGTTTCCCGGATTATGAACAAACTCTATCCCCACGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGGCGGATGTAAAGAAGCGTTCGCGGTATTTCTGCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 528-823 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992810.1 [Clostridium] symbiosum ATCC 14940 Scaffold1251, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 528 32 100.0 33 ................................ TGCAGTGGAAGTTTCTGGACGCCGCAACCTGGT 593 32 100.0 36 ................................ CTAGTTGCTTCAGGAAAGCAGCGTCGTCATCGCCTA 661 32 100.0 33 ................................ TGATTCTTCCCGGCATACGGATTGTGAATATAT 726 32 100.0 34 ................................ ATACTACTATATGTTCCAAATTGGTCGAGTTGTA 792 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAACGGTTCTGCGAGCCTTTAAACGGAATGTTATCGGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTGGGCATACTTATCGGGTATCCGCAGCAAAGCCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTTTGGTCAGGACTATGGCCGACTGCACAGTGGCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTAGCCGGTCTTGCACCGGAAACAGCCCTGGGGCGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTGTAGTGGGTTTCATTCCCTGCAGCAACATATTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAGCCAGGAAGAGGCAGAACAGGCAATGACAGCGTT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTGTTTGACAGGTCAATGCTATCCCGGTTAAGCTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACATTTTCTTCATAAATAACTTCATTTCGTAATATGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTTGGCTTTGTAATGTATAGGAAAGTGATTCAAGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCTCGTAAGAGCCTGTGGATCGAAACGTCAATCAATTCCCCATCCAGTGAAGCATGCATCGGTCAGGCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 923-1151 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992810.1 [Clostridium] symbiosum ATCC 14940 Scaffold1251, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 923 32 96.9 34 N............................... CTGTTTGACAGGTCAATGCTATCCCGGTTAAGCT 989 32 100.0 34 ................................ ATTTTCTTCATAAATAACTTCATTTCGTAATATG 1055 32 100.0 33 ................................ TTGGCTTTGTAATGTATAGGAAAGTGATTCAAG 1120 32 96.9 0 ...............................N | ========== ====== ====== ====== ================================ ================================== ================== 4 32 98.4 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAGCCAGGAAGAGGCAGAACAGGCAATGACAGCGTTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTGCAGTGGAAGTTTCTGGACGCCGCAACCTGGTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTAGTTGCTTCAGGAAAGCAGCGTCGTCATCGCCTAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTGATTCTTCCCGGCATACGGATTGTGAATATATGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACATACTACTATATGTTCCAAATTGGTCGAGTTGTAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCTCGTAAGAGCCTGTGGATCGAAACGTCAATCAATTCCCCATCCAGTGAAGCATGCATCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCATCAGGTTCTTCGGCTTCTCCCTGATGGCGTAGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACACGTACAAGGGGCCGTTGACAAGTTTAATCAGATGGTCAGGCTCGTAAGAGCCTGTGGATTGAGGTTTTATTGGCGCAAAGAGGTGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGGCTCAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGTCCGAAGCAGTACTT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1248-1477 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992810.1 [Clostridium] symbiosum ATCC 14940 Scaffold1251, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1248 32 90.6 34 NNN............................. GTCAATCAATTCCCCATCCAGTGAAGCATGCATC 1314 32 100.0 34 ................................ CATCAGGTTCTTCGGCTTCTCCCTGATGGCGTAG 1380 32 100.0 34 ................................ ACGTACAAGGGGCCGTTGACAAGTTTAATCAGAT 1446 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ================================== ================== 4 32 94.5 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GGATCGAAACATACTACTATATGTTCCAAATTGGTCGAGTTGTAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTGTTTGACAGGTCAATGCTATCCCGGTTAAGCTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACATTTTCTTCATAAATAACTTCATTTCGTAATATGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTTGGCTTTGTAATGTATAGGAAAGTGATTCAAGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTTATTGGCGCAAAGAGGTGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGGCTCAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGTCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCAGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGAACG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-232 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992826.1 [Clostridium] symbiosum ATCC 14940 Scaffold1412, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1 31 100.0 36 ............................... ATCAAGCAAATCAATCAGAAGAACCATGTCATAGTG 68 31 100.0 36 ............................... ATGAAACATTAAATTCAAACAACAACCAAGGTCAAT 135 31 100.0 36 ............................... ATCAACTGTACGTGCATCCAAGATATCGTATTCGAT 202 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 100.0 36 GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Left flank : | # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATCTACCACAGTCCAGGACTATCAATGCATCAAACGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATTATGCAAAACCCGTTATCATCTACGCTATCAACGGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATCAATATGTCGGCGCCACCGGCGGAGCGGAGGCCAAGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATATCTGTGTCGTAAGATTCATATAAAATATTCGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 333-496 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992826.1 [Clostridium] symbiosum ATCC 14940 Scaffold1412, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 333 31 100.0 35 ............................... ATCTACCACAGTCCAGGACTATCAATGCATCAAAC 399 31 100.0 36 ............................... ATTATGCAAAACCCGTTATCATCTACGCTATCAACG 466 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 100.0 36 GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Left flank : GTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATCAAGCAAATCAATCAGAAGAACCATGTCATAGTGGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATGAAACATTAAATTCAAACAACAACCAAGGTCAATGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATCAACTGTACGTGCATCCAAGATATCGTATTCGATGTCGAGGCTCGCGAGAGCCTTGTGGATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG # Right flank : AATCAATATGTCGGCGCCACCGGCGGAGCGGAGGCCAAGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATATCTGTGTCGTAAGATTCATATAAAATATTCGTAGCGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATTTATCACCGATGGATTAAGCTTCAGGATGACAACGTCGAGGTTCGCGAGAGCCTTGTGGATCGAAATCAAGAGCCTCCGCAACCTTTTCAAGTTCTGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGATCCACAAGGCTCTCGCGAGCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 666-832 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992826.1 [Clostridium] symbiosum ATCC 14940 Scaffold1412, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 666 31 96.8 38 N.............................. ATATCTGTGTCGTAAGATTCATATAAAATATTCGTAGC 735 31 100.0 36 ............................... ATTTATCACCGATGGATTAAGCTTCAGGATGACAAC 802 31 96.8 0 .......T....................... | ========== ====== ====== ====== =============================== ====================================== ================== 3 31 97.9 38 GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Left flank : ATCAACTGTACGTGCATCCAAGATATCGTATTCGATGTCGAGGCTCGCGAGAGCCTTGTGGATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATCTACCACAGTCCAGGACTATCAATGCATCAAACGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATTATGCAAAACCCGTTATCATCTACGCTATCAACGGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATCAATATGTCGGCGCCACCGGCGGAGCGGAGGCCAAGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AATCAAGAGCCTCCGCAACCTTTTCAAGTTCTGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGATCCACAAGGCTCTCGCGAGCCTCGACAGAAGCTCTTTCGCATCTTGCGTACTCTCAACCTATTTCGATCCACAAGGCTCTCGCGAGCCTCGACGTCTTCCCTTCAATTTCCTTATTATGTAATGACTATTTCGATCCACAAGGCTCTCGCGAGCCTCGACATCTGGAAATGTTGGGGATTATGTGACCGAATTATTTCGATCCACAAGGCTCTCGCGAGCCTCGACCAAGCTGCTGGCCGTTGTACGGTTCCCAGGGGAATTTCGATCCACAAGGCTCTCGCGAGCCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1201-970 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992826.1 [Clostridium] symbiosum ATCC 14940 Scaffold1412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1200 31 100.0 35 ............................... ATAATTCGGTCACATAATCCCCAACATTTCCAGAT 1134 31 100.0 36 ............................... ATAGTCATTACATAATAAGGAAATTGAAGGGAAGAC 1067 31 100.0 36 ............................... ATAGGTTGAGAGTACGCAAGATGCGAAAGAGCTTCT 1000 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 100.0 36 GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Left flank : CAAAAGAGCCGTAAATATACGGTTTTCATTTTACCGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATATAGCGCATCTGCTTATGTTTGTGTCCAGATGGAGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATATTTTCTCCTCCAAGGTCTTTCAGCTTTCTTGTGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATTGATAAAAGATAGCTCATTCTATGTGGATTCTCGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATATATGTCGTTCGCATATCAATTCCGGCCCCGAGAAGGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGGCTCGCGAGAGCCTTGTGGATCGAAATTCCCCTGGGAACCGTACAACGGCCAGCAGCTTG # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATCAGAACTTGAAAAGGTTGCGGAGGCTCTTGATTTCGATCCACAAGGCTCTCGCGAACCTCGACGTTGTCATCCTGAAGCTTAATCCATCGGTGATAAATTTCGATCCACAAGGCTCTCGCGAGCCTCGACGCTACGAATATTTTATATGAATCTTACGACACAGATATTTCGATCCACAAGGCTCTCGCGAGCCTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCGATCCACAAGGCTCTCGCGAGCCTCGACTTGGCCTCCGCTCCGCCGGTGGCGCCGACATATTGATTTCGATCCACAAGGCTCTCGCGAGCCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 1938-1367 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992826.1 [Clostridium] symbiosum ATCC 14940 Scaffold1412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1937 31 100.0 36 ............................... ATTACCTGCTTGCCCATCTTGCGGCTCTGGCGCGTC 1870 31 100.0 37 ............................... ATTCCAGTGTCTCGGTCCGTACAACAGTGGTACATCC 1802 31 100.0 38 ............................... ATCCTTTATCCGGCTGAAACGCTGTTTCCGGACCCGGA 1733 31 100.0 37 ............................... ATCAAAAGAGCCGTAAATATACGGTTTTCATTTTACC 1665 31 100.0 36 ............................... ATATAGCGCATCTGCTTATGTTTGTGTCCAGATGGA 1598 31 100.0 35 ............................... ATATTTTCTCCTCCAAGGTCTTTCAGCTTTCTTGT 1532 31 100.0 35 ............................... ATTGATAAAAGATAGCTCATTCTATGTGGATTCTC 1466 31 100.0 38 ............................... ATATATGTCGTTCGCATATCAATTCCGGCCCCGAGAAG 1397 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 9 31 100.0 37 GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Left flank : TGAAAACTGTAGGGTTGACTATGGGTTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTACATTTTTGCTGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATGTTGTGACGCAAACGAAAAAGCTGTGCTTCATTCGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCTCGCGAGAGCCTTGTGGATCGAAATATTTCTCGTGTGTCGTATGTGCTGGAGCCTTTTATC # Right flank : ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGGCTCGCGAGAGCCTTGTGGATCGAAATTCCCCTGGGAACCGTACAACGGCCAGCAGCTTGGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATAATTCGGTCACATAATCCCCAACATTTCCAGATGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATAGTCATTACATAATAAGGAAATTGAAGGGAAGACGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAATAGGTTGAGAGTACGCAAGATGCGAAAGAGCTTCTGTCGAGGCTCGCGAGAGCCTTGTGGATCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //