Array 1 108361-105400 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCN010000008.1 Salmonella enterica strain LB17 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108360 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 108299 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 108238 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 108177 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 108116 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 108055 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 107994 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 107933 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 107872 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 107811 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 107750 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 107689 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 107628 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 107567 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 107506 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 107445 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 107384 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 107323 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 107262 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 107201 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 107140 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 107079 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 107017 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 106956 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 106895 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 106834 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 106773 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 106712 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 106651 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 106590 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 106529 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 106468 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 106407 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 106346 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 106285 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 106224 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 106163 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 106101 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 106040 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 105979 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 105918 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 105857 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 105796 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 105735 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 105674 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 105613 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 105551 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 105490 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 105429 29 96.6 0 ............T................ | A [105402] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125993-124620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCN010000008.1 Salmonella enterica strain LB17 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125992 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 125931 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 125870 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 125809 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 125748 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 125687 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 125625 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 125564 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 125503 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 125442 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 125381 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 125320 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 125259 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 125197 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 125136 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 125075 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 125013 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 124952 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 124891 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 124830 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 124769 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 124708 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 124647 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //