Array 1 278908-278696 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLN01000033.1 Streptomyces albidoflavus strain NBRC 12790 Scaffold1_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 278907 29 100.0 32 ............................. GTGGCCAGTTTGATCTGTGCGCTTGCTCGGAG 278846 29 100.0 32 ............................. ACGGTCAACGGCTACGCCGCCGACTGGAAACA 278785 29 96.6 32 ..............T.............. GGGTCGTCGCCCTTGTCCGCCGCAAACACCAC 278724 29 75.9 0 T........T...GT.......C.AC... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Left flank : GCATGAGCTGACGCCGGTTCTCTTCACGGTGGCGGAGGCGGGCGATCCGGTGGCGTCCGGGCTGGTGGACCGTCTGGCGGACGAGGTCGCCAACATGGCGGCTGTCGCGCTGGGGCGGCTGGGGTTGCTGGACTCGCCTGCGCCCGTGCTGCTGGGCGGGAGCATCCTGGCTGCGCGACGGCCTGGGCTGGATGCGGGGGTGCGGGGGGAGTTGAGCCGGCGGGCGCCACTGGCGGAGGTGCGGGTGGTGGAGGCTGCGCCTGTGCTGGGGGCGGTGCTATTGGGGATGGACGCGGTGGGTGCGGGGGTGGGGGCTTATGAGCGGGTACGGGGGTGGTTCGGGTGAGGAGGCTGTGTGGGGGCGTGGGGTGGGCTTCAATGGAGAGGGGCTGGCGTTTGCGAAGCTGAGGGATTTTATGGGCTGTTCGCGCGGAATGCCGGAGTTTCTAAAGTTGGCGCGGGTCGGGGGTAGGGCGGGGTAAGCCCGCAGGTCGGAGAGA # Right flank : TGCTCTGTGATCACGAGCAGCAGGGTCAAGCGGGTGCCCACACATGCAGGCCTCACCCACGCCGACCCCGACCCAGTCGCCGTACTCCGCCCCCCCAATCCCCCACCCCCGGGAACCAACCCCACCCTCCACCACGTATCCCCCACAGAGCCGTCCACCGCACCCCCCGCCCACCCGGGCCCCAGCCCCCCGGATCAGGTGAACGCCCGTGTGGTTCGTAGGGAGTGCGGCCATACTGGCGGCCGGGCACTAGCTTTCCCGGGAGTGGGGAAGGGTGTTCTGCGACAGGACCGAGGGGGAGGTCGCGTGAGCAGTCAGCCGACGGGCGGGGCGCCGCCGGGGTCCGGCGTGGGTGCGTTGTCGGTGCCGGGGCAGCGGTCGCCCGCGGCTGCTCCTGAGACGCCTGGTCCGGCCGGTGAGCCCGGTCATGTTCCCGAGCCGCCGCACGAGCCCGGTCTGCCCTCGCGGCTGCGGGCGCAGGCTCGTACCGTGCCCGGGGG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43013-43284 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLN01000022.1 Streptomyces albidoflavus strain NBRC 12790 Scaffold23_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43013 28 92.9 33 A...C....................... GGCGCTGATGGGCGCTCCCGAGCCCGTCCTTGT 43074 28 96.4 33 ...........A................ GGGGGAGGGCAACCCCCCGAGCGGCACCCCGGC 43135 28 100.0 33 ............................ GCAGGTCAGGGGCTGGCTGGACGATCCGGACAC 43196 28 100.0 33 ............................ GCCTCACGGCCACCGCTCGGCTTCACGATGCGC 43257 28 89.3 0 ....................C...GC.. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 95.7 33 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : TACGACACCGACGCCGACATCACCCGAGCCGTCGAAGCCGGCGCCACCGGCTACCTGCTGAAAGCCGAACGCCCCGAGGAACTCTTCACGGCCATCAGGGCTGCGGCCTCGGGGCGTACGGCGTTGTCCCCGCCTGTGGCGCAGAGGGTGATGACTCACTTGCGGAACCCGCAGCCGGAGTTGACCCCGAGGGAGCGGGACATTCTGCGGCACTTGACGCAAGGGCTGGGGAACCGGGAGATCGCCAGGGCGTTGTTCATCAGCGAGGCGACGGTGAAGACGCATCTGGGCCGGATTTACCAGAAGTTGGGGGTGGAGACACGGGCGGGGGCGGTGGCTGTGGGAAAGGAGCGGCGGTTGTTGGGGTGAGGGGGGCGGGGTGGGTTCGTGGATTGGGGGGTGGGGTGGGTGGGGGGGTGCGTAGGTTGGGGGGTGAGTGGGAGGGTGCGGTGATGGGCAAAGGGATGGCAAAGGCCGTCCGAAGGTGCAGGTGGGGGAGG # Right flank : CCCGCCAAACCTGACAGGTGTTCCCCCACCCAACTCCCCGGCCGAACCGGACGACACCCATGTCACTGAATCGCAAGCGCCCCGGAGCCCGCAAAGGCAACACACCCACCCCGCCCCGCCCTGCTCGCGCGTCAGCCTCACCAAGGGCACCCCCGCGTCGCCGACCAAAACACCCCCGCCAGAACACCCCTAGAACCGGACAAAACGCCCCCACCAACAGCAGCCACGCCAACCACCCTCAACATCACGAACACACGATGGACACAAAATCGCCACAGGCGGAGCATCCGGCACTCGCGTCATACCTCGCAGCCCCACACTGAGCGGACGCATCCGCATTCAGGGGGAATCATGAGACGCCAACTCGCCATCGCCGCAGCATCCTTCACCGCTGTACTCGGCCTCGCCGCCTGCGACACGGAGGTCACCTCCTCCCCCGACAAGCCCGCGGCCGCCGACGACGCGAAGCCCGGCAAGGAAGCCGACAAGGCCGAACAGGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 73070-73341 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLN01000020.1 Streptomyces albidoflavus strain NBRC 12790 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 73070 27 100.0 34 ........................... CCAGTTGGCACCGCCGCACGATGATCACAACCCA 73131 27 100.0 34 ........................... CCGCCGAGGGGTTGTGGATGAGGCCGCCGCGCTG 73192 27 100.0 34 ........................... CCTTCGGGCTCGCCACCTCGACCGCGAGCACAGT 73253 27 100.0 34 ........................... CCTCGTCGAGGGTGGCGTTCAGGACCGTGACGAT 73314 27 100.0 0 ........................... | T [73339] ========== ====== ====== ====== =========================== ================================== ================== 5 27 100.0 34 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : GGCTCGCGATGAGCCTGCTCCGAGCAATGGACATGCCGCTCTCGCCACGCGAGGTGCGGGTGCTGAGCAGGGCCGCGCAGGGGGATTCGGTGGCGGAGATCGCCCGGGGGTTGTGCCTGTCGCACGGGACGGTGCGGAACTACATCGCTTCGGCTACGCGGAAGGTGGGGGCGAGGAACCGGGTGGATGCGATTCGGATCAGCCGGGCGGCGGGGTGGGCTTGATGGGGTTGAGGGGGCTGGTGGGGGCTTGGGTGGTACGGGGGTGGGGTTGGGACTTGGCGGGTGGGGTGGGGGGTTGGGTCGGGTGAGGCTGAGGAGTGGGGTCGGGGTGTGAGTGGCTGGAAGGGAGGGGTTCGCGGGAGATCTGTCGGGTTCAATGGGGGGCGGGTGCTGGGTGGACACCATGTAGGGGGTATGAGGCATTCACCCGCATTGCCGGAATCTTTGAAGCTTGCGGGAGAGAGTGACTGGGCTGAGTGAAACCCCAGGTCAGCGAGA # Right flank : CCCTCCCGGCAGCCGCCGCTCCCCGCCCACGCCTAGGTCGACGCGGTGCCCCGGCTCCCCATCGCCGAAGGCTCCCCCAGCCCCGCCGCCAGTTCCCCGTACAAGGCCGACTCACGAAGGAGCGAGGCGTGGGTCCCCAGGTATGGGGTCGCCCCGTCCAAGAGCAGGACGCGTTGCCCAGGTTCAGGCGCCGGAAAGTGGTGGCTCACTGTGATGACCGTGGCCGGGTGGGAAGCGAAGGCCAGCTCGGTCGCAGCCCGTGCCCCTGCGTCCAGGTGGGCCGTGGGCTCGTCCAGGAGGAGCAGGGGCGTAGGTGTCAGCCAAGCCCGGGCCAAAGCAATGCGGCGGCGTTCGGACGGGGTGAGGTGGTCCGGGCGGAGAGGGCGGGCGGGGTCAGCGGCGAGGGGGGCCAGGGTGAAGGTGTCGATGGCTTCCGTGATGCGAGGGGCCGGGGCGTTCGGGGCGAGGTAGGTGAGGTTGTCGTGGAGAGGGGCCTCGAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //