Array 1 25574-26883 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYEI01000038.1 Escherichia coli strain B031h NODE_38_length_45006_cov_35.7766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25574 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 25635 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 25696 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 25757 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 25818 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 25879 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 25940 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 26001 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 26062 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 26123 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 26184 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 26245 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 26306 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 26367 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 26428 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 26489 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 26550 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 26611 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 26672 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 26733 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 26794 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 26855 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 87982-88620 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYEI01000016.1 Escherichia coli strain B031h NODE_16_length_89229_cov_29.298, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 87982 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 88043 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 88104 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 88165 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 88226 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 88287 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 88348 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 88409 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 88470 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 88531 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 88592 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGGGTAATGACTCCAACTTATTGATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //