Array 1 1843-14 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABEFJ010000085.1 Acinetobacter baumannii isolate aba_5m, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 1842 30 96.7 30 ............................A. TTAAAACAACGTTTTTTGCCCCGTCATAAA 1782 30 96.7 30 ............................A. GGAAACTAAAGCAACTAACCAAGTTGAAAA 1722 30 100.0 30 .............................. GAATTGGCTAAACCTGCATTGATTGCATGT 1662 30 93.3 30 ............................AA GATGAATACTTTCAAAACCGTAAACGTTAT 1602 30 96.7 30 .............................G CTACAAACTTTATAGCAAAATCATCTTCTA 1542 30 93.3 30 ............................AA ATAAAAAGAAATTGAATACAACCACCATTA 1482 30 96.7 30 .............................A TAACATCATTTTCAGTATCACAAACGATTA 1422 30 100.0 30 .............................. TACCATATCGTGTTGCGCCAATAACTTGCA 1362 30 96.7 30 ............................G. ATGAGTCACTTCCATCTGACTATACAGATA 1302 30 96.7 30 ............................G. ATGATGCCGTAGCTTCTCAAATCATGTCTG 1242 30 96.7 30 .............................A AGGCATATGGCAAATTTGAAGAAGTTAAAA 1182 30 93.3 30 ............................AC TGAGATGTTCAAAAGATCAAAATCCTCTTT 1122 30 96.7 30 ............................G. ACGCACCGCACCCAGCTTTTTTCATAACTG 1062 30 93.3 30 ............................GC TTTTTTTTACTTCTTCTTCAACTTGTTTAA 1002 30 93.3 30 ............................AA GCACGAGACCAATCAAGCATCTTTGTTAAT 942 30 100.0 30 .............................. TGAAAAGCCACATTCGCAAAGTTCAGATAA 882 30 100.0 30 .............................. GGAAAAGCCACACTCACACAATTGGGAAAT 822 30 96.7 30 .............................C ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 762 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 702 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 642 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 582 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 522 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 462 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 402 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 342 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 282 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 222 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 162 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 102 29 93.3 30 ..............-..............C ATGATCATAGCCCTTATAGATATCGTATTT 43 30 96.7 0 ............................A. | ========== ====== ====== ====== ============================== ============================== ================== 31 30 96.3 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TCTGCCAACGGTTT # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14-2147 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABEFJ010000030.1 Acinetobacter baumannii isolate aba_5m, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 14 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 74 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 134 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 194 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 254 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 314 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 374 30 96.7 31 ............................G. ATTAAAACTAGCTTATAAACTTTCTTAAATC 435 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 495 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 555 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 615 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 675 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 735 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 795 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 855 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 915 30 96.7 31 .................T............ CTCATCGTGAAAGGTTTTGCAAATATGCCTT 976 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 1036 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 1096 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 1157 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 1217 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 1277 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 1337 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 1397 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 1457 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 1517 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 1577 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 1638 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 1698 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 1758 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 1818 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 1878 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 1938 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 1998 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 2058 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 2118 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 36 30 95.0 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : AAGAAATTGTCTTG # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //