Array 1 117822-118332 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIKN01000005.1 Escherichia coli strain I25 NODE_5_length_307325_cov_28.4591, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 117822 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 117882 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 117942 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 118002 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 118062 28 100.0 33 ............................ CTGCTCGACCCTGTCATGCGGCGCATCCGGCTC 118123 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 118183 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 118243 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 118303 28 85.7 0 ....................A...C.CT | T,C [118323,118327] ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 127389-128316 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIKN01000005.1 Escherichia coli strain I25 NODE_5_length_307325_cov_28.4591, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 127389 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 127449 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 127509 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 127569 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 127629 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 127689 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 127749 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 127809 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 127869 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 127929 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 127989 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 128049 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 128109 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 128169 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 128229 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 128289 27 92.9 0 .......................-C... | T [128309] ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //