Array 1 119526-120773 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGA01000006.1 Klebsiella quasipneumoniae strain M31 M31_BDMS190049458-1a_1.clean_(paired)_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 119526 28 100.0 33 ............................ TTCCAGTCGCTTCCAGTACCCGGAATTATCCGA 119587 28 100.0 33 ............................ TCTTTATATCGGCCTGTGAGGCGATCAGGGTCA 119648 28 100.0 33 ............................ TCCACATCTCGCTGTCAGAGTGATCCTGCATCG 119709 28 100.0 33 ............................ TCAGGCAGCAGGTGGAAAGTCCACGGCAGGTCG 119770 28 100.0 33 ............................ TGAAGACGAAGGTGTATTTCAGGAGCCAGTAAT 119831 28 100.0 33 ............................ TATCAGCTGTTTAGATTGCGGCTTATGCGATGG 119892 28 100.0 33 ............................ CTCATGGCCCTCCGACGTATTCAGGTAGTCAGC 119953 28 100.0 33 ............................ TACTACCCATCGCCGGAAGAAATTTAGCAATAT 120014 28 100.0 33 ............................ CTTTGGTATCTGGGGCATTATCTCCACGGCTGG 120075 28 100.0 33 ............................ CAAGTTTTTGCAGGCTACGCAGATTTTGAGCTG 120136 28 96.4 33 ......................G..... TATCTACAGCTTCGTGCTGCCATTTTTCGGCGT 120197 28 100.0 33 ............................ CCCATCAATGCCGAGGGGCGTCATAATGACGTA 120258 28 100.0 33 ............................ CTGATCGCCAGCGTCATGAGGAATTCCGGACTG 120319 28 100.0 33 ............................ TCCATTACCGATTAGCGCTGCAAGCTGCGTTGG 120380 28 100.0 33 ............................ CCGTTTACGCATCTCTCACGTTATAGTGCTGCG 120441 28 100.0 33 ............................ TTGGGGGTAAGTTTCGCTCAGGTAGAAGTTGAG 120502 28 100.0 33 ............................ CGTAGCAGCAGTCCTTACCCTCAGCCGGGCGCA 120563 28 100.0 33 ............................ CGTCTGACGGTCTTTCGGAGGGAGATTTTCAAG 120624 28 100.0 33 ............................ TCAGCCGGGCTATCCGTTCCAGCGGTCCGCCGA 120685 28 100.0 33 ............................ CAGGGTGCTGTCCTCGTCCTCGATATCACCGGC 120746 28 92.9 0 ...........T.........T...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.5 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTTAGCGTCGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCGGCGCAGGATAACAGTCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGCACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACCGCGCTGCGCGATGCCGAACACTGTCATCTGACGCTCCCGGCGGAGGATGTGTGGGTTTTTCCGCAGCGGTAACCACGCGAAGCCACGGAAGGCAAGCGTCAGGACATAACGCTACGCTATGGGATGACAAAAGCGCTTTGCGTCCGGCTATGGGCCGGGCAGGCCAGTAGGCTAGACCGATCCTGGTCAGCAGCCAGTCGACGGTGGTGATATGGGGACATACTTTTTCGCTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATAAGCTGCTAAACACAATATGCTGGT # Right flank : CTCGTGACCGCTTATCTGACGCAGACGCATCAATGCGTGACATTATGGTCCTTAACGTACATCAATGTCTTCGATATTTCGTTTAGCCAGCTCCGTCCTATATAATTTTTATATGATTCCACTTATAAATATTCGTGAGCTATGTTTGTTTTATGCTTACTAAAATGACGTATAAAGCGTTAGGCTTTCTTACTCATCTGGAGATATTGCTCTCCCTATTAATTATTTTTAACTTTTTATATTATTATTTTAGGTTTTTATAATAAATTCAGTCTGTTGTGTGTATTTTTGATTTTGTAAAAAGTTATTTATAAATTCCCCTATTTTTAGTATTAATAAAGGGCACATGATTTTTAAGGAAAAATTCCATGAGGCGCTTGACCAGGGTTTCGCTTCAAAATCAACATGCCATCGCGGCGATAAGTTATGAAAACTGCCCAGCGAAAACCCGAAGGTTGAATGATGGCCGCGTGGTGCAGGGACGCTCGGTGTTAAGCCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129482-130549 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGA01000006.1 Klebsiella quasipneumoniae strain M31 M31_BDMS190049458-1a_1.clean_(paired)_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 129482 28 100.0 33 ............................ TATGGTGTTTTCTTACTGCGTGATCTGGTTGTT 129543 28 100.0 33 ............................ CCAGATTTTTCATATTTGCATATGCAGCTACCG 129604 28 96.4 33 .C.......................... CTTGTGCTTATTGGTATAAGCATCTCCGCATTC 129665 28 100.0 34 ............................ CATGATGCGCGCATACCAGACCGGGTATCAGAAG 129727 28 100.0 33 ............................ TACGTTTTGATGCAAAGGCTATGCGCAGCATTC 129788 28 100.0 33 ............................ TTGGTCTCTTCGTTCATTAGTGGTACCTCAGAA 129849 28 96.4 33 ..........T................. TACAACGCGCACCCTTGACGGGTGGATTTGTGG 129910 28 100.0 33 ............................ CCGTATGACATGCGCCGCGTTACCTTCACAGGG 129971 28 96.4 33 .......T.................... CTCAGGGTGTTAGCGGGTTACTTCCCATCCTTG 130032 28 96.4 33 ..........T................. CGGTTGGCTGCTGGCGTACCATATCCAGAACCT 130093 28 100.0 33 ............................ CAAGCCAGACAACGGCCCAGTAATGGAAGCATT 130154 28 100.0 33 ............................ TATCGACGAGAAAATTAAGTGGCTGATTGACAA 130215 28 96.4 33 ..........T................. TGGTTGAGAGCCAGAATCTCTACATCGACGATA 130276 28 96.4 33 ..................A......... TACTGTTTGCTATTCCGGTGGCACACCGATTCC 130337 28 100.0 33 ............................ CGAGATTTGCTACGACTCAGGCACGCCTGTAGC 130398 28 100.0 33 ............................ CGCCAAAATGGTTTATGAAGTTTATGGCCGCTG 130459 28 100.0 33 ............................ CATGGGCATCTATAAAGCGCTGGGAGCAGAAGC 130520 28 89.3 0 ............TCT............. | C,C [130542,130545] ========== ====== ====== ====== ============================ ================================== ================== 18 28 98.2 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTATAAAGAGCGGCTCTGTATCGATCTGGCGTTTTCCCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGATGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCCGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTTCGTGGGCGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTGTTCGTCTCTGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGGGAGGTCAGAAAGCCGATTATTGAGGTCAGTGGGTTACAACTGATTATTGAAACCCTAAAACTGTCGTAATTCGCGGATATAGTGGTTGAATTGACGTTCTTTGACAATATGTTGGT # Right flank : CGCTCGGCTTACCCCGCCAGATGGCACACGGCTTCAATATTGTGCCCGTCTGGCGCAATCACAAAGGCGGCGTAGTAACTGGCGTGGTAGTTTGGCCGTAGCCCCGGCGCGCCGTTGTCCTTTCCTCCGGCGGCCAGCGCCGCCTGCCAGAAGGCATCCACCTGCTCGCGGCTGTCGGCGCGAAAGGCGATATGCAGCGGCGCCGGTTTTTCCGTACTTTGATAGAGGCATAGAGAGACATCGCCGCTGCCGGCCAGCTCTGCGCCGTAGCTCGGTTCGCCTTCGCCGACCAGCGTTACGCCAAGCGGGGCAAGGGCTTGTAAAAAGAATGCTTTGCTCGCGGCATAATCACTGACGCCGAATTTCACATGATCGAACATATCTTCTCTTCTCCTGTGGACGGGATATCGCCAGCTGAACGGTTTAGCCGGAAAATAGAGGTGAAATAGTTAACAACGGGTAGTAACTTTTTTAACAGCTCAAAATGTTTAATTATTCCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //