Array 1 102323-105219 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDTC01000007.1 Corynebacterium aurimucosum ATCC 700975 strain DE0410 NODE_7_length_172517_cov_98.432701, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 102323 29 96.6 32 ............................G CCATCCAATCCCACTTATTCGAGATCCAGTCC 102384 29 100.0 32 ............................. GGGACGATGACACTAAAGTCGGGGTTGCCGTA 102445 29 96.6 32 ............................G ATTAGCGGGCCGGTGAGGGAACTCGCCACCCA 102506 29 100.0 32 ............................. CCGGCGCGTCGGGCGAGCTCATTGATGACCGG 102567 29 96.6 32 ............................G TGAGACGCTACGAACCAGCAGATAACGAAGAC 102628 29 100.0 32 ............................. CAGGTACATATTGCGCGCCGTTTGGAGAAGCT 102689 29 96.6 32 ............................G CCCACCATCCTCAAAGACCTCATCACCGGCCT 102750 29 96.6 32 ............................G CAGGTCACCAGCCGCCAGATGCCGCAGGTAAT 102811 29 100.0 32 ............................. TTGAGCGCTACGCCAACGGTGGCACACGTGAG 102872 29 100.0 32 ............................. GTCGGGGCAGTTGGTTAGCCCGCGTGAGGCGA 102933 29 100.0 32 ............................. CTCACGGGATGAACCATTTACATCGCACCTCC 102994 29 100.0 32 ............................. ACCCTGGACCGTAACGGCATGGGCGTGCCCGT 103055 29 100.0 32 ............................. CACACAATCGGGGCATTGGTGCCGCACTCCTC 103116 29 96.6 32 ............................G GCGGCACTATCTACGGCATCGACATTAGCGAG 103177 29 96.6 32 ............................T CCTTATTCATCCAGGTCATTGTTGGGGTCCTT 103238 29 100.0 32 ............................. GGCGCGTGCCGTCCTCCAGCGTGGTGATGTAG 103299 29 100.0 32 ............................. ACCCGCACCTCCTCCCTCTGGGCCAACACACT 103360 29 96.6 32 ............................G TTTGTAGGCCCCTGGGTAGGCCCCGAGTTGGG 103421 29 96.6 32 ............................G AATGCCGCCACCGCCAAGAAACCTACCCCCAG 103482 29 96.6 32 ............................G TACGGCAAGGGTGTGGAGGTTAGCGCTGTGGG 103543 29 100.0 32 ............................. ACTATCCTCAATAAGGGCCACGCCGGACGGAT 103604 29 100.0 32 ............................. AGGCCGACATACTGCCCGTGGGCTTGCATGAC 103665 29 96.6 32 ............................G TGGCCCTGACCTGGTGCGGCCTGAGGGGATCG 103726 29 100.0 32 ............................. TGCCAGTCACCAGCACTGTCGAGACGAATATA 103787 29 100.0 32 ............................. GGCAAGGTATGGCGCGACGTGCTCGACCCCAC 103848 29 96.6 32 ............................G CACGACGGCATCCTGGTCAAAGCTGGCGATAG 103909 29 96.6 32 ............................G GATTCGCATGAGTTCCGCATGGTCAATCGGTG 103970 29 100.0 32 ............................. GCAGCGAATTGCCCCAGATGATCACATCGACC 104031 29 96.6 32 ............................G GCGCGGTGTGGTATCTGAACACCCAAATCGGC 104092 29 96.6 32 ............................G TATGACCTGCAGGTACCGGAGGACATCGACCT 104153 29 100.0 32 ............................. GCCCACTAATCCCACGCCAGTCCCACAAAACG 104214 29 100.0 32 ............................. ACAGCACCCACCGCATTCTGGGTGGTGGCCTG 104275 29 100.0 32 ............................. GTGGTGGCGACGATGCAGCAGGCAGAAGAAAG 104336 29 96.6 32 ............................G TTCTCCGGCCCGATGAACCCGTGGAACGTTTG 104397 29 100.0 32 ............................. ATCTCATCACTCAGGGCATCAAAGTCCTGGTC 104458 29 96.6 32 ............................G TCGAAGTGGAATCGTGCCTGCACTTCTGGGCA 104519 29 100.0 32 ............................. CCTTACGTTATGCGCGGCGGGGCGTTGTCCCT 104580 29 96.6 33 ............................A GCAGAACCATTGCTATCAACGGTGACAGTCGTG 104642 29 96.6 32 ............................G GGTGATGAGGGGTCAGCTTCTAATGTGTCTAA 104703 29 100.0 32 ............................. TTCTTCGAGGGTGGTCGGGCCTGCGCTGAACC 104764 29 96.6 32 ............................G CCACCAAAATCACCCCCCGCCGTCATGACAGT 104825 29 100.0 32 ............................. GATGTGCTTCATGATTATTGGGGCCAGAGACC 104886 29 100.0 32 ............................. GAGCTATTTATCAAGCTCAAAAAAGGACGAGC 104947 29 100.0 32 ............................. CAGAGGCGGGCCAGGGTGTCGCTCGTGTTGCT 105008 29 96.6 32 ............................G AGGGAGGACTTTCCGACTTGTGAGGCGTTTCC 105069 29 100.0 32 ............................. TTCTGCAAGGGTGGTCGGGCCTGCACTGAACC 105130 29 100.0 32 ............................. AGCTTCGGACAGCAAGCGGGCGGACTCACCCG 105191 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 48 29 98.5 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : AACTCGAAGTCATTGCTTCAGGAGTGAATTGGGCTGAAGAGGAGACACTTTCGTGATCGTTCTTGTCGTAACTGCATGCCCCGCTGGGCTTCGGGGCGACTTATCAAAATGGCTGATTGAACTAACATCGGGCGTCTTTGTCGGCCGCCCTTCCGCACGAATTCGTGACTTGTTGTGGGAGCGAACCGTTGAACTGTGTAAGGACGGAAGAGCATTACTAGTCTATTCGGCAGCAAACGAACAGGGTTTAGAATTCCGGACTCACCGGCATCATTGGCAGCCACAAGACTTTGATGGTGTCACGCTCATGGTTCGTCCTGCTCCTGGAAGCAAGAAAATTCAGAACAGGACTGGTTGGTCACAAGCCCGACGGATTCGTTCGGCATACCAGAAACAGAAACGAAAATAGCTGAGGAACTCTAGACAGGTTCTGTGTCTCTTCCGAGAAGAAGCCGTATGTAAACTGAGGGTACGGCTCCTTTATACGCTGCTCAGCAAGT # Right flank : CAGCTTCGGACAGCAAGCGGGCGGACTCACCCGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTCCCCGCGTGAGCGGGGATGAGCCGCACTTGTCCCGCAGCTCGGGGAAGGTATCCCCGTGCTCCCCGCGTGAGCGGGGATGAGCCCGGCATCCAGAAGGTTAAGGATGGTGAGCGCCTGTGCTCCCCGCGTGAGCGGGGATGAGCCAACGAGCATTCCCGCCTGCTCCGCGTCCGCCAGGTGTGCTCCCCGCGTGAGCGGGGATGAGCCCACGCCACGGGGGAATAGTGTTTCCATCCGGCGGTGCTCCCCGCGTGAGCGGGGATGAGCCGGCGGCGGTGGGTGGAACCCCATCAATATGGTTGTGCTCCCCGCGTGAGCGGGGATGAGCCCCATGAACCGACAACTTGCCCGCAACGCCCTC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105352-106157 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDTC01000007.1 Corynebacterium aurimucosum ATCC 700975 strain DE0410 NODE_7_length_172517_cov_98.432701, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================== ================== 105352 29 89.7 32 NG..........................G CACTTGTCCCGCAGCTCGGGGAAGGTATCCCC 105413 29 100.0 32 ............................. GGCATCCAGAAGGTTAAGGATGGTGAGCGCCT 105474 29 96.6 34 ............................A ACGAGCATTCCCGCCTGCTCCGCGTCCGCCAGGT 105537 29 100.0 32 ............................. ACGCCACGGGGGAATAGTGTTTCCATCCGGCG 105598 29 96.6 32 ............................G GCGGCGGTGGGTGGAACCCCATCAATATGGTT 105659 29 100.0 32 ............................. CATGAACCGACAACTTGCCCGCAACGCCCTCA 105720 29 100.0 32 ............................. ATCACCGGCTTCAGCTTGAATGCCCAGCCACC 105781 29 96.6 32 ............................G CATGAGCGTTGACGAACAACAGTTCCGTGACA 105842 29 96.6 32 ............................T GACGAGGATGACGAAACAGCCGCGATGGACTG 105903 29 96.6 32 ............................G TCTCCACGGATACGGTGCGCAATGATGTGAAA 105964 29 79.3 136 T...................A.A.T..TA GGACTGATATCGTCGGAAGGTGGTCCACATAGATGACGGAGAGTACGCCCCACGCATGTGGGGATAGCTCCATGGCAGGCGTTGCTAAGGCCGCAATGGCGGGGCACGCCCCACGCACGTGGGGATAATCCGGGTA 106129 29 72.4 0 ......A......A.A....TG....TTT | ========== ====== ====== ====== ============================= ======================================================================================================================================== ================== 12 29 93.7 42 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : CCGATGTGCTTCATGATTATTGGGGCCAGAGACCGTGCTCCCCGCGTGAGCGGGGATGAGCCCGAGCTATTTATCAAGCTCAAAAAAGGACGAGCGTGCTCCCCGCGTGAGCGGGGATGAGCCCCAGAGGCGGGCCAGGGTGTCGCTCGTGTTGCTGTGCTCCCCGCGTGAGCGGGGATGAGCCGAGGGAGGACTTTCCGACTTGTGAGGCGTTTCCGTGCTCCCCGCGTGAGCGGGGATGAGCCCTTCTGCAAGGGTGGTCGGGCCTGCACTGAACCGTGCTCCCCGCGTGAGCGGGGATGAGCCCAGCTTCGGACAGCAAGCGGGCGGACTCACCCGGTGCTCCCCGCGTGAGCGGGGATGAGCCCAGCTTCGGACAGCAAGCGGGCGGACTCACCCGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGTATAAACCGTTGGAATCGTTATGTCCAACGTGGGGTTGGGCGATTATACCCAATCGAGGGTGATTTCGGTAGGATGCCCTGTCCGTTGCGGAAGTTCTCGATTTTTTCGCTGGAGTCTTAACACTGTGCTGATTTCGTAGTTTGCCTTTGCATGAGCAAAACAGGTCAACTAGTTTCTCCCAGTACGCTAGGGTCAGTATCTGTGATTCAGGACGTCGACCCGCTCATCCATTCTCTGTACCAGGTCTTTGACCTCATCGGTGTGGTGCTTAACGGCATTATTGGTGGCACGATTGCACGCCGTAGGGAATTCGACATCATCGGCTTCGTCTTTCTGGCGCTCTTTTCTGCGCTGGCGGGCGGCATGATTCGTGACATGCTGATCGCTAGCGGTCCGGCAGCGGCTATCTCTGATCCGCTGTACCTCACGCTGGCGTGTGTGGGCGCGCTCGTTGCTTTCTTGACGGATTTGAAAGGCAAGGCCTGGGAAATCTTCCT # Questionable array : NO Score: 4.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.87, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //