Array 1 162424-161847 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHOF01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N51299 N51299_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162423 27 93.1 32 --........................... AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162364 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162303 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162242 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162181 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 162120 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162059 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161998 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161937 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161876 29 96.6 0 A............................ | A [161849] ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 883-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHOF01000035.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N51299 N51299_contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 882 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 821 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 760 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 699 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 638 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 576 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 515 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 454 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 393 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 332 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 271 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 210 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 149 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 88 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : C # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 422087-423395 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHOF01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N51299 N51299_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 422087 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 422148 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 422209 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 422270 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 422331 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 422392 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 422453 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 422514 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 422575 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 422636 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 422697 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 422758 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 422819 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 422880 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 422941 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 423002 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 423064 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 423125 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 423186 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 423247 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 423308 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 423369 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : | # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //