Array 1 320934-324532 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024846.1 [Clostridium] scindens strain G10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 320934 33 100.0 35 ................................. ACTCATTTCATCCATTTTTATTCCTCCACCAAATT 321002 33 100.0 34 ................................. TTTCTCAACATTCCTCTCCATGCATCACCTCTAA 321069 33 100.0 34 ................................. ATCTGTAGGCATTGACTCAACAATGCAGACAAGT 321136 33 100.0 33 ................................. ATCCTGCTGTAGCAATATGCGATGATACGATGA 321202 33 100.0 33 ................................. TTTTCTAACCGATTGGGATTATGAACAATACCT 321268 33 100.0 34 ................................. GTTCATTTTTGTGTCCTCCTAATGCTAAGTCATT 321335 33 100.0 34 ................................. GCCATTGCTTCAATTGCCGGAATATTTCCAAATT 321402 33 100.0 34 ................................. ACTGTTACAGTATACGGACAGGGACAGGTATTTT 321469 33 100.0 34 ................................. GCCATTGCTTCAATTGCCGGAATATTTCCAAATT 321536 33 100.0 34 ................................. ACTGTTACAGTATACGGACAGGGACAGGTATTTT 321603 33 100.0 36 ................................. AGATGCTCTTAATGTGCCATCTCCTGTTACGATATC 321672 33 100.0 34 ................................. TCCTGTATCTTGTAATTTCCCGGCGCAAGGTACT 321739 33 100.0 34 ................................. AAATTTGATTTGGTTTTATACGCAGAGAGGAGCG 321806 33 100.0 35 ................................. GCTCTGTCAACTGTCATTCCCCGGTTATCCCACAT 321874 33 100.0 36 ................................. TGCGTCTCGAATCTCCCGAACCGTTGCTTCGGCCGG 321943 33 100.0 34 ................................. CCAGTTCTTCGGGTAGTATATGTGGTTCATAACC 322010 33 100.0 35 ................................. AGTTCACCAGTTTTTCCGCAATTGCCTGGATCACA 322078 33 100.0 34 ................................. CTCATTGCACCATTCAAGAACTCTTCCAGCCAAA 322145 33 100.0 34 ................................. AAGAAACAAGGTGCGATATGAAAAAGGCAGTATT 322212 33 100.0 35 ................................. TCGAAGGAAATAGTCAAGAAATCGGCAATCCTTAC 322280 33 100.0 34 ................................. GCTCTACCGGCGCACCGCACCCCGGACAAAACTT 322347 33 100.0 34 ................................. ATATGATTTGGCTAAATTTGTATGCCAAGATGCC 322414 33 100.0 33 ................................. ATTATGAAGATACTATTAGATAAGATTATGACC 322480 33 100.0 35 ................................. GCATCAACGATGGTTGCTTTGTTACCTACGACAGC 322548 33 100.0 33 ................................. GTTGCTATCTTCTCCAACGTCTCCCAGTCAGAT 322614 33 100.0 34 ................................. ACGAAGGAGTCTGTAAAATACTCGATCACGCTTA 322681 33 100.0 33 ................................. TTCATCGTAGTATCTTCCATCTGTCAGCCTTGT 322747 33 100.0 36 ................................. TCCTAGTTCCTCTTCCGTAGAAACCGCAAACATGAT 322816 33 100.0 33 ................................. GCAAAAATGAGCGAAATAGATCCCATCCTCTTT 322882 33 100.0 34 ................................. ATCCATGCAAGCCGGATATCTTTGAAAAGACCTA 322949 33 100.0 35 ................................. GAATCACCAATTTTGACATCGAGAAACGCCCATAC 323017 33 100.0 33 ................................. TTATTGGAAACAAACTCCATAATTGTTTCATTC 323083 33 100.0 34 ................................. CTTTCTACTCTTTTTCGATGACGTTCTCCAAACA 323150 33 100.0 34 ................................. CTCTGCCACTCCCTCCTTCTTATCCTATCGCATT 323217 33 100.0 33 ................................. ACACCTCCATCCTATCCTGTTCCAGTCCGTTTT 323283 33 100.0 34 ................................. GTTGCTGACGATGAAGTAATAGATGAAAGCGAGC 323350 33 100.0 34 ................................. ACATTTCGATTCTCATAGTATCGGAGATAGTAGT 323417 33 100.0 33 ................................. GGAATTAATAGTTCTACGGCAAATTTGTTGGCC 323483 33 100.0 35 ................................. ACAATCTTCGTAACCATCAACTCCGGCTTGCCAGT 323551 33 100.0 33 ................................. ATTTATAGGCTCCTGCTAGAGCCAACTATAAAA 323617 33 100.0 36 ................................. TGAAACTTTATAATTAAAACAAAAGAATAGGTGGAG 323686 33 100.0 34 ................................. GACCGCATAAGCGAACGCACATACAGCAACTGCA 323753 33 100.0 36 ................................. GACGCTCAAGCATATTGCCGTATACGCGCTTGTACC 323822 33 100.0 34 ................................. GACTGTTTCAGAGGAGGGCAGAAGAAAACAGAAA 323889 33 100.0 33 ................................. GACATCCTTAAGTCTCAACTGGCTGAAAAGATG 323955 33 100.0 37 ................................. GCTATCTGCTCATCCGTCAGTCCATCTCTGGCCCATC 324025 33 100.0 34 ................................. AGTAGAGCCCGCTCCCGAACTAAGTATTGGAGAA 324092 33 100.0 35 ................................. GCTGTATGAGTGCTTGTGGTGACGAATTAAATGTC 324160 33 100.0 35 ................................. GCAGGATGATAGTCTTGCCGCCGGAACCCATACAG 324228 33 100.0 34 ................................. GTCTCCTCTGCCTTGCGCTTCTCTTCCATTCTTG 324295 33 100.0 35 ................................. TTAACATCAACTCCGAACTGCCGGAGAATAGCATC 324363 33 100.0 35 ................................. ATATCTGCTGACATAGCCATACTTATTTCTTACCT 324431 33 100.0 36 ................................. TCCATCTTAATTTCTGTAACTTCATACGTAAGTTCG 324500 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 54 33 100.0 34 GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Left flank : CCGCCATTCTTATGGAAGTAGGTGATAGAATGCTGGTGTTAATAACTTATGATGTGAATACAGAGACAGAGGCAGGAAAGAGACGTCTAAGGAAAGTAGCAAAGCAATGCGTTAATTATGGACAGCGGGGTCAAAATTCCGTGTTCGAGTGCAATCTGGACGCCGCAAAACTTCGCCAGGTAAAGGCTATCTTGGAAGACATAATTGATAAAGAGGTTGATAGTTTAAGATTTTATAATCTAGGTAATAAGTATAAAGACAAGATTGAACATATAGGAGCAAAGAAAAGTTTTGATGTGACTGCCCCTCTTATATTCTAGAGTGGTTTAGTGCGAATGTGAAGTGCACATGAAAATGCAGGGAGATTCGCACCTGGATATTGATGATATGAGGGCTAGGGAAGTTATAATTTGTTGTGTAGGTGTTGGAAAAAGTTCTTTTGTTTGGCGTTTTGCATAAGAGATTGGCTGTATATTAGGAGCTTTATGTGCAAAATTGCT # Right flank : TAAAGAGTAGAGAGGGGCGTTTTGGTATGAAAATAGAAATAGGCAAAGAATTTCCACAGTATTTTAAGCCCTCATATCCAGAGGAATTTAAATTATTTTCACACTTTGAAACGACAGCAGGAATACCAACTGTTTTGTTTGCAATCACGACTTGGAAAGAGAATGGTAAGCCGAATGTGTGCTTTCATTCGTGGAGCTGCTTTCACGGAGATAAAACCGCTTTCTTTGCCGTGATGGGGAACTTATATCAGCATACCCACACCTATGCCAATATCCAAAGAGAAAAATGCTTTTGTATTAACTTCCTTCCGATAAGTTTCTACGACAAGCTGGTAAACACCATTCGCCAAAATGAAATGGACGATGACGAATTTGCGGCAGGAGGGTTTACAGCTTCTTATGCCAAAACAATTCACGCCCCTGTAATCAATGAGGCGTTTCTTAGTATGGAATGTACCCTGAAAGAAGTACAGGATTTAAGCGGTGCGGGAATTACAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 2437806-2436089 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024846.1 [Clostridium] scindens strain G10 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2437805 33 100.0 34 ................................. TGTGGATCAGGTGCTTAAGTCAAATAACTTCCTC 2437738 33 100.0 34 ................................. ATGAAATTCAGCGCCGGGCATTGATGACAGACCC 2437671 33 100.0 33 ................................. ATCGTCTCCAAGATACAGGAATCCATCTCTTAC 2437605 33 100.0 34 ................................. GTAAAGCAGAAGTGATAGTCCATTGCCTTTCACG 2437538 33 100.0 34 ................................. GCTTAGGCTCTGGGTTTGGGTTAGCCTTTGTTGC 2437471 33 100.0 35 ................................. TGTATGGAGCATCAGAAGACATCACCACCGACAGG 2437403 33 100.0 33 ................................. TTTCCATCTTCTGGGATTCCGGCACCAGTAAAA 2437337 33 100.0 35 ................................. ATCTGTCAGCTGATCATAATGATAACTTCCATAAT 2437269 33 100.0 36 ................................. ATCCTTATCTTCTGTTGTTGCAGTGCCGGTATCATC 2437200 33 100.0 33 ................................. TAGCGATATTCTCATAGGTAAAGATCGTCATTT 2437134 33 100.0 34 ................................. TGCTTCTACAGTAATGCCACATAATAGGAGAACC 2437067 33 100.0 36 ................................. AATTCCTTATATTCTTCTGAATGATACTTTTCTATA 2436998 33 100.0 35 ................................. ATCTGAAAGCACCGTTAAAGATGAATGGGACATGG 2436930 33 100.0 33 ................................. AGTTTTGAATTATACTCTTTAGCAATATTAATC 2436864 33 100.0 35 ................................. GAGATGTCGGTAGACGATGTGGAACTTGAGGTAGG 2436796 33 100.0 34 ................................. ATCATAGGGATGTTCCGATCGGGCCAGGCACTTT 2436729 33 100.0 35 ................................. CTTTCTTGGTTGTGTACCCTTCGTGGTCTCCTTTC 2436661 33 100.0 35 ................................. ACTCTAATGTTTCCAGTCACATTCGGATACACATA 2436593 33 100.0 34 ................................. ACTCCGGCCGAATCGAACTGGTACCTTCCCGTCC 2436526 33 100.0 34 ................................. GCTTTCCGGCGCCTTGCCTCGCCGCTGGCCTTGC 2436459 33 100.0 33 ................................. GCTAATATTTTGGCATAAATAATCGGTTCCATC 2436393 33 100.0 35 ................................. GAAAAAGCATTTGAGCGGGCAGGACAGCCGAATAT 2436325 33 100.0 35 ................................. CTTAGCACTGTAGTAAAATGTTCCGCCTCTACTGC 2436257 33 100.0 35 ................................. TCTTCATTGCATTCTTCCAGCCATTCCGAAAACTT 2436189 33 100.0 35 ................................. TCCTAACATAATCTGCTGTGCCCATAACATTGCCA 2436121 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 26 33 100.0 34 GTCGTTCCCTGCAATGGGAACGTGGATTGAAAT # Left flank : ACAAGTTAGGTCTTAACTATGTATCTTGCTCACCATTCCGCGTGCCGATCGCAAGACTGGCTGCAGCACAGGCTGCAATCGCAGAAAAGAATGCATAATTAAATCACAAGTTATTTTGACGCAGGGGCAGTATGCCTCTGCGTCTTTTGAATATTGTTAGAAAGATTTTCTTACTATAGCCAACAAGAATTAAGGGTGGTGGAATAGTATGTCTAAAGGAGCTCGAGACGGCAGTCCTTCTTATCATTAAAACTTTATAAAAAAGCTAATTGAGAAATTAGAAATATAAAAAAGAATAAATTTCCTTGAAAATTAGATATCGATTCAGTAGTGCGAATGTGAAGCGTACATAAAAATCCCAGGATATTCGCACCAAAAAAGTTGCACAAAAATAGTGTATTGTATTACAATATAGATTAGATGAGAGAATGTATCTAAAGGTAACTGTAATATAGCACAAAAATTTTGCAGTTATATATTAAAAATTGGATAAGTTTGCT # Right flank : ATAACATTCACTAAAATTGAATAGTTTACAATTCACACTGGGGACAGGACTACGAAACATATTTTAAGAAAGTTTATATAAAATTACCGAGTCCGGGTACTGAATGATACACGCATGTATACAGGCAATGAAAAAAATAACAAAAATTATTACACATATTGTTATAGAATTTGTAGATGAATAGTAAAAAAGTGAGTGGTAGGAAAATCTGCCACTCATTTTTTAAAAAAATTGAAGGTTCAACTCAGTATGTGATTGTTAATTGATATAGATAATACCTATAAATTCATATAATATATCGAAAGCATTGATTTCACAGCAATTCAATGGCATGGTATCATATACGCATGTGGAAAAGTCATACGAACATTATGAGAGGTTGTTATGAAGAGAGAACGAAAACTTGTATTATTATCGCATTGCATCTTAAACGTAAATGCTAAGGTGGAAGGAATTGCTACTTCAAAATCTGGTATTACAGAACTTGTTACGAGTCTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTGCAATGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA //