Array 1 74114-75624 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV788411.1 Corynebacterium sp. HMSC05H05 Scaffold62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================= ================== 74114 27 78.6 113 CA......T...-.A..A.......... GTAGTAAGGAGGCGGCTTTACAGTTCCCCGCAGACGCGGGGTATCTTCAGAATCGCGCGACGGAGTTGTCTCCAAATGCCTTTCGGCCTATGCAACATCGCTGGTCGCCAAGT A [74117] 74255 28 100.0 33 ............................ CAACGCCAAGCGAGTGCTTGGCCTAAAGACAAC 74316 28 100.0 33 ............................ CCGGACCGCGTGAAACTCATGAACAAGCACTTC 74377 28 100.0 33 ............................ CGGGATCTCCGTCTCTAGAAAGACCTCACCGCT 74438 28 100.0 33 ............................ CCGTCCATCTAGTGGCGCGAAGGAATGGCAACC 74499 28 100.0 33 ............................ CCATCTAACCACCGTGGGGGTGGGTTGCTAATG 74560 28 100.0 33 ............................ CGGCCCTCCCGCCACCTCTCCACGATGTGCCCA 74621 28 100.0 33 ............................ CCGTTCCGAGGTTCAGTTCGCGGACTACGTGCG 74682 28 100.0 33 ............................ CAACGTGCATGATTACCTCCGTGTCTTCAGTTG 74743 28 100.0 33 ............................ CAAAATGCAGTCCGCGTTCAACAAAAAGCAGGT 74804 28 100.0 33 ............................ CGGCACCGCCACGCGCTGCACCTTTTGCCGGTT 74865 28 100.0 33 ............................ CGAACTCCGGGTCGTTCGTGAGGCGGTAGAGCC 74926 28 100.0 33 ............................ CTCGCACAAGGAATCGACCGTTGAGACCTTGGT 74987 28 100.0 33 ............................ GGACCTTGCAGCCATCAAGAAGCGCAACAAGGA 75048 28 100.0 33 ............................ CTGCTCCGCCACGCGCTCCACCGTGATAGCAAA 75109 28 100.0 33 ............................ CCCCTGCCCGGTACTTTCATGGGCTTGTGGGCG 75170 28 100.0 33 ............................ CGCCTTCCTGGATGTGGCATGGGTGTTGCTGCC 75231 28 100.0 33 ............................ CCACGCCCAACGACTCGCACGAATCATCCAAGG 75292 28 100.0 33 ............................ CAACGCCAAGCGAGTGCTTGGCCTAAAGACAAC 75353 28 100.0 33 ............................ CCGGACCGCGTGAAACTCATGAACAAGCACTTC 75414 28 100.0 33 ............................ CCACGCCCAACGACTCGCACGAATCATCCAAGG 75475 28 100.0 33 ............................ CTCTTCGCCCAGATTCGGGCGTTGCCGGACGCG 75536 28 100.0 33 ............................ CACGCCAGTAATAGATGCCACCGGGCCACCTTC 75597 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================================================================================= ================== 24 28 99.1 37 GTCTGCCCCGCACACGCGGGGATGAGCC # Left flank : ATGGGGAGTCCGGCATCGGCCACGTTCGAAAGAAGGTGCCTGAACTCCGGTTTCAGGTCGAGCTGGCCCTGGAAGGTGAGGGTCGCCTTACCTAAGTCGTGATTTCCAGCGAGCCATATGTAAAGGAGTCGAACTTCCTCAACGGACAGGCTCAGGTTCTGTGCAAGATTTTCTTTTAGGGAGTCCGAAACCCAGGTGTCGTAAACCGCAGCAGCGGCGCAGGCGGAGTCGATTAGATGCTGGGCCAAGCTGAGATGACCGGTTTCATCGCCAGATTTCGCCCACAGCGACCGGGCTTGTGGGCTTAACTTTTGAACGAAAGAGTCGATGGTGGCTGGAGTCTGGTCTTGGCAGCCAGGTTGGTTCGTCGAATGTGGCATGAGAACTCCGCTCGAATTGCTGTTGAAAATAAGAGTAGCAGAAAAGAACTCCCCTTACCTCCTCCATACTAGTTTTAGTCGAACAGTCTCAGGGATTTGGCGGGTGCGGTATGATCTCCG # Right flank : C # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACACGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7804-6249 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV788377.1 Corynebacterium sp. HMSC05H05 Scaffold139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 7803 28 100.0 33 ............................ CCACCAGGGCGCAAGCCCCCACACCGGAAGGAA 7742 28 100.0 33 ............................ GGTGGCGCCGCACCATGCGCAGGTGACGTCGAC 7681 28 100.0 33 ............................ GTCACCCTGGCACCGAAGGAGCAGAAGATGATC 7620 28 100.0 33 ............................ CTGTTCACCGAGATTCGGGCGTTGCCGGACGCG 7559 28 96.4 33 .....T...................... GGTGGCGGAGGCCCGCAAGAGCGGCGACTCAAA 7498 28 100.0 33 ............................ CACCTTCACCACGTTGGCCTTGAACTTCCCCAG 7437 28 100.0 33 ............................ CAAGGAGCACCACCGGGCGCAGGCCATCCTCGA 7376 28 100.0 33 ............................ CGCAGCGTCAGCTCCGGGTCGGCGCAATGCAGC 7315 28 100.0 33 ............................ CTCCAGGGCCATGTAGACGTAGCAGCCTGGGTA 7254 28 100.0 33 ............................ CTCCACAGCTGGTACGTCTGGTGCGAGTAGGCC 7193 28 100.0 33 ............................ CGCCAGCTCCCCCGGCTCCCACGAGTTCAGGCC 7132 28 100.0 33 ............................ CTATGAACCCGGCCCGAACCGCGTCATTGATTC 7071 28 100.0 33 ............................ CTCCACAGCTGGTACGTCTGGTGCGAGTAGGCC 7010 28 100.0 33 ............................ CTTGCCCGGCTCCACGGAGGCCACCCACTGGCA 6949 28 100.0 33 ............................ GTGCCGGTACGCAGCACCATCATCAACATGCAC 6888 28 100.0 33 ............................ CCTAGCCGACCGCACAACTTCCCGGAGCACACT 6827 28 100.0 33 ............................ CTACTGCACGAACTGTAGGAAGGCGTACAACGC 6766 28 100.0 33 ............................ CAGTTCGGTTTGCATTAGAACGGTGGCTCCGGG 6705 28 100.0 33 ............................ GTGCCGGTACGCAGCACCATCATCAACATGCAC 6644 28 100.0 33 ............................ CGATGACGACGCCACGGCATCACACGCCACGAA 6583 28 100.0 33 ............................ CTGGCGAAAAAACGGGAAAAATCCAGCGAAAAA 6522 28 100.0 34 ............................ GTTCGTGACCGTCGCGGTCATGCTGTGTCCGGCC 6460 28 100.0 33 ............................ GTCGAAGCTGACCTGGCGACCAGAGACCTCCTG 6399 28 100.0 34 ............................ CGCCCCAGGGAAGAAGCGACCGACGAATTCGCCC 6337 28 100.0 33 ............................ CTTGTCGTTGTGGTCGAACAGGTAGTTCAGGAT 6276 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 26 28 99.9 33 GTCTGCCCCGCACACGCGGGGATGAGCC # Left flank : T # Right flank : CAGCGCGTCGGCGTGGTCTGCCGCACCCGCGGGCAGCTCTCCCGCGTGGTCTCCGGTCTTGCCGACCACGGCATCGACGCCGTCCAGACCAAAAACGCCGAACTGGCCTCCCACGAGCAGGTTTCCGTGATGACCATGCACGGCGCCAAAGGCATGGAGTTCACTCACGTGATCCTCATGGGCGTGGGCAAGGAGATCATGCCGCTGCGCTTCCGCCTGAAGAACCTGTCCGAGCAAGACGCCCGCGCCGCCCTGCAGCGTGAGCGTTCGCTGCTGTACGTTGCGGCGTCGCGCGCCCGCGACGCGCTGGTGGTGACCACGGTCGGCGAGCGGTCGGAGCTGCTGCCGGTGGCGGGGTAGGGGCAGATTAAAGTGGCTAGAGTCACCACAGCCACAATGCCCAGATGATCTCAGACGCTCACATGGCTGGACGGAGAACTGTGCGGCCCAGATGATGTAGCAACCGCAACACTTCCATGTGGGATGATCCCTGAACCTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACACGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //