Array 1 15129-15585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPAW010000009.1 Lactobacillus crispatus strain D31t1_170403_E4 NODE_9_length_80106_cov_42.5659, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15129 29 100.0 32 ............................. TATAAGGAGTGAACGAACATGACCACTGTTAT 15190 29 96.6 32 ............................A TGCTGAGGACAAGATTAAATTAGCGAATGCTA 15251 29 100.0 32 ............................. GTATTGCACGTATTTGGCTGATAAAGCAAATG 15312 29 100.0 32 ............................. CTAAGTTGCAAGATATTCCTGTGATCTTTAAT 15373 29 100.0 32 ............................. CAGAAAGATGAGGGCTAAAGAACATGAACGTT 15434 29 100.0 32 ............................. GAAATGCCAATTAGGGATTGAGATTCTGGATT 15495 29 100.0 32 ............................. ATGCAGAGTGGCATGCATGTCATGATTACAGG 15556 29 82.8 0 ..G..........A...........AA.A | C [15578] ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : ATTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGGGATTAAAATAGATACAATAGTAATGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATCGGGATTTGTTTACT # Right flank : AGCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTGCTTTTATTTTTGATTTAATTGATCACGCATTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTGGCGCTATTTGCTTTAAAAAAAATAGATAGTGGCGTTGATGCAGAAATGAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 250197-251329 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPAW010000002.1 Lactobacillus crispatus strain D31t1_170403_E4 NODE_2_length_256563_cov_62.4169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 250197 29 96.6 32 ............................A CTAATTGAACGATCCTTTTTTGCCGTTAATAA 250258 29 100.0 32 ............................. TTCGCTATCTTTTTCAGCCAACATGCTAGCAA 250319 29 100.0 33 ............................. GAACCAAGCCAACTTGCTTTACTGCAGTCTTTG 250381 29 100.0 33 ............................. ATGGTTTAATTGATTGTTATTGGCATCAAATAA 250443 29 96.6 33 ............................C GCAAAAGGCTTTATTGGTGCCAAGGCTTTAATG 250505 29 96.6 32 ............................C AAGTTAAAAGACATCGCTTTTGATGGCAATGG 250566 29 100.0 32 ............................. CACGCATGGCATTTTCACGCCTTTTTATCGGA 250627 29 96.6 32 ............................C TAATATCGGTGGTGGAGCATTTGAAACTGATA 250688 29 96.6 32 ............................C TACCCGAACTAGCCTTTAAATCAATCAAGGAA 250749 29 100.0 32 ............................. AACTAAGTCACCGTAATCATTGACTAGTAAAT 250810 29 100.0 32 ............................. ACTAATCATGGTGCCATTTCATATACTGCACC 250871 29 100.0 33 ............................. CTAGCGAAATCCCCACTAGCAACGCTAATAGCA 250933 29 100.0 32 ............................. TAGTAATAATAAAGCTATCACCGTTACTAAAA 250994 29 96.6 32 ............................C GAGATATAGAAAGCACAAGCGCCAGCCGGGCA 251055 29 96.6 33 ............................C CCTTGTCTAGACTTTTGCCTATATGTTGGCTTA 251117 29 96.6 32 ............................C TAACTTAGCAGTTGGTACAAGAGGTACAGCAA 251178 29 100.0 32 ............................. GCCCAATGATCTCTCTTATCGGTTCGATTCCG 251239 29 100.0 32 ............................. CCTTGGTCTAACGCCATGTGGTCAGTCATCAA 251300 29 72.4 0 ...........A.AC........A.ATAG | C [251322] ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.1 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : GGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCATCCACAGCATATTATTGATGGAATTCAGAATCGAATGCATCGTGGAATTACCATTTTACATGACGCAGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACTATTATTGATCGTTATGACATGTATGATATTCGCCAAATCGTGCAAGAAGCGGATCCATATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGACTTATAAATAGAATTTAAATTTTAGGAGCACTTTGGGGGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGGGATGTTGATATATCGTGGATCATTTAGT # Right flank : GCCGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGCAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATACGCGTGGTGCTAGTTAAATCGTTCTAGGCAATATGCCATATTATAAGCTAAAATGGCTATTTCTAGCCGCTGCTGAAAGCCAGCTAAGCTCCTTGCTCGGTTATTTTCAGCGTTATAGTAACTGAGCAAAGAAAAGTCGCTTTCAATTGTTCTTCTAATTGCCATCAGTTGATGATTATTATGTTTTTTAGCACCTTTCATGTTTTTTCGATATGGTGTCCAAAGGACATAGCCCAGACGTTTTAACTCGGCAGCTAA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 255029-255789 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPAW010000002.1 Lactobacillus crispatus strain D31t1_170403_E4 NODE_2_length_256563_cov_62.4169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 255029 29 100.0 32 ............................. GATTGAAGTATCTAACTTAGATTCAACAATTC 255090 29 96.6 32 ............................C CACCGAGTTCATCTTTAACCAAACCGATTAAA 255151 29 100.0 32 ............................. ATCACAAACGCCGCATAGAACAAGGACTAGCC 255212 29 100.0 32 ............................. CGTCCATAGGCTACCTCCGAACTAGGCTTTCT 255273 29 100.0 32 ............................. TATTACCAGATAGAGCCAATCTCAAACGCTTT 255334 29 96.6 32 ............................C ATGTCATGTGTTGACCAACCAAGATTCTCAAG 255395 29 100.0 32 ............................. GTCGGCTAACTGTTTAGTAAAGTCAGCCAGAG 255456 29 100.0 32 ............................. CATTACTTCTGGGTTACTTTAAACCACTCATC 255517 29 96.6 32 ............................C AGACTGATATCTCATCTTTAAGATTAGTTCAT 255578 29 96.6 32 ............................C ACCACAGATCGAACAATTGCAGGAGTTTATCA 255639 29 100.0 32 ............................. CATTCCAGGTCAAAAGGGCGAAAAATTGGCTA 255700 29 93.1 32 ..................A.........C ACTGATAAGACGGGTGTATAGGTGCCTAGTTA 255761 29 89.7 0 .............G........C.....C | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTGATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAACTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGTTTGTTTTTACCTAAGCTAGTTAAGAGCGTATGATAAAGCAGTGTTACAGGTAAGGCTGTTGGAAAAATTCTTAATCGTGAGCAAGAAAGGATTAGCAGACAAATAATAATATTTTTATTTAAGATGAATCATAGCTGAATGATGTTATGATTTCTCTTTTATTTGGATATTATATCAAGCGGATATTGTCTATTTAATAAGAATTGATATACTTGGTAATAGGATCAAAGTGATGAAAAAATGGTGTTTGCATATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : CCTGCCTGCCTTAAGAACTTGTCTACCTGCTGCGTATTCTCCAGGTGATCCTAAAAAATGAAAGGGCTGTTTAATCGTGATATTAACGCCTAAAGAGTTATATAAGGTGTTAGAGTATAAGGATTATGCACCATTACCAATATTAAAAAAGTAATGCTACAGATAAGCAAAAAGTTATTTATGCCGATTATATTGTTGAACGCTTAAATGAAAATAAAGTAGATGATCCTTTTTTAATAAGAAGTGTAAATAATATAATCTTAATTTTTTAGGAAAAACATAGTCTAGAGAATCATTGTATTCTCCATATATGTGGAGCTGATTTAAAAAAGTGATAACTATATTTTTGATATTCATTGGTATAAAGTAAACGAAAATGTATTTGCCTAAAACAAGGAGGGTATAAAAATGATGAAACTTAAATATATAGGCAAGACTTTTTATGATGGACTAGGCTTAACGAATGGCAAAATCTATGAATGTTTAGGTGAAGAGGGACC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //