Array 1 194534-195110 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJJ01000003.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039515 scaffold_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194534 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 194595 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 194656 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 194717 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 194778 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 194839 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 194900 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 194961 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 195022 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 195083 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 211247-213047 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJJ01000003.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039515 scaffold_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 211247 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 211308 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 211369 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 211430 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 211491 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 211552 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 211613 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 211675 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 211736 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 211797 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 211858 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 211919 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 211980 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 212041 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 212102 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 212163 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 212224 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 212285 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 212346 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 212407 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 212468 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 212529 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 212590 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 212651 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 212712 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 212773 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 212834 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 212895 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 212956 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 213018 29 86.2 0 TAA.........T................ | A [213042] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //