Array 1 35908-32756 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOIF01000019.1 Photobacterium sanguinicancri strain CAIM 1827 CAIM1827T_019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35907 28 100.0 32 ............................ ACCAAGTCCGGCAGACATTCCATGCCAGTAAC 35847 28 100.0 32 ............................ CACACAACGGGCTGGAAGATTTCCGACTGTCG 35787 28 100.0 32 ............................ TTGGAGCCTTGCTAATTCCAGTCGCTTTATTT 35727 28 100.0 32 ............................ AAACCCACCAGAGGGTAGTGAATCATGATGAT 35667 28 100.0 32 ............................ GACAAGAACGCTAATCCATGAGAACCCAAACA 35607 28 100.0 32 ............................ GTAAAGCACGTGAATTTGTCCTGGGCTTATCT 35547 28 100.0 32 ............................ GACAAGTGCTGCGATCACTTGAAAAAAGAACC 35487 28 100.0 32 ............................ AGGTGTAAACTCGGGCGGGTCATTCAGTAAAT 35427 28 100.0 32 ............................ TAAGAATGCCAGCCTGGAATGGTATCAGTTCA 35367 28 100.0 32 ............................ AGCATACCAGGAGCTTGGTGAGTACTGGAAAA 35307 28 100.0 32 ............................ CGCAGAAATGCGCGGCGACCCCGTGGAAGACC 35247 28 100.0 32 ............................ AATATGTACTGGCGCCTCACCAATCTCGCGTA 35187 28 100.0 32 ............................ ATCGAAGGCAACGTCACCGGCTTAATTAAAGG 35127 28 100.0 32 ............................ GTATTCGTTACATGCCGTGGATTAACCGCATT 35067 28 100.0 32 ............................ TAATCGCTTACGCAACAAAGCAAGGTTATGAG 35007 28 100.0 32 ............................ GCTGATACTTCGCAAATCGACCATATGTTTTT 34947 28 100.0 33 ............................ ACTTTATTAAAAGCGGTATCTGAATCGGTGTAA 34886 28 100.0 33 ............................ CAGAATCACTTTATCTTTTGTTGTGGCCATAAG 34825 28 100.0 32 ............................ AGTGATAGCAAGGTCACTGAGAGTGACAAGCA 34765 28 100.0 32 ............................ ACGGACAACTTTGTCCACGGTCAAACAGTAAT 34705 28 100.0 32 ............................ TAGTATGAACCCTGAATACTCACCACTCCAAG 34645 28 100.0 32 ............................ ATCACCGCAGCAGGGTTAGACATCAACCCCAT 34585 28 100.0 32 ............................ GTTGGAATTGGCCAAAAGATTGGACCTAAGAA 34525 28 100.0 32 ............................ GGTGGCTTTCCTTGTCAGGCGTGGTCAATGGC 34465 28 100.0 32 ............................ TTCCAGGCACGCTTGTTACTTCTGACTTATCT 34405 28 100.0 32 ............................ GGTAACTAAATCAATTGATGACCAGTCAATAT 34345 28 100.0 32 ............................ CCCTGAACACTGTTAACGAAATTCCACAACTT 34285 28 100.0 32 ............................ TGGCGAGATTGAGTTATTTTGATGTACTCACC 34225 28 100.0 32 ............................ GTAACTGTTTGTGTCGTTGTCTAGCTGCCCGA 34165 28 100.0 32 ............................ TTAAACGCGGCGAAGAAGAAATCAGCCAAATC 34105 28 100.0 32 ............................ CACGGGCTTGGCGACCATTTCCGACAGTCGGA 34045 28 100.0 32 ............................ AAACACAAACACGCGGCTTGCATCAATAGTGA 33985 28 100.0 32 ............................ ACAACAAAGCAAACGGAACTCACATCAACGAT 33925 28 100.0 32 ............................ ATGCGCTGAGCAAATGAACGTGCATTCTCAGA 33865 28 100.0 32 ............................ ATTGATGTGGTATGCGCAAGTATCCAGCTAGA 33805 28 100.0 32 ............................ CCAGCCCTACATACTCTGTTGTTGGTGGTCTT 33745 28 100.0 32 ............................ GTTCATCATCATGTTGTCGAATGCTTCACCAA 33685 28 100.0 32 ............................ AATTACACCCCACTCACTGACTGAAAATGCAC 33625 28 100.0 32 ............................ CACACGTCAAAACATTTAAAAGACACTTAGAA 33565 28 100.0 32 ............................ TGTCAAACAATAACGAAGATATGATAAAAAAG 33505 28 100.0 32 ............................ AGGTACATGCGGTGAGATGGTTGCACACCTGC 33445 28 100.0 32 ............................ TATGAACCAAGGTACGAAAGCAGAAGGCTTGC 33385 28 100.0 32 ............................ TTACTTGCTCACCGTGGTATCTGCGACCGATA 33325 28 100.0 32 ............................ AGTAAGCTACACGGGTTATGCGTCCAAATAAT 33265 28 100.0 32 ............................ AAAAATCAACCCAAGCCCAGCAGAAACGATAC 33205 28 100.0 32 ............................ CGCAGATAATGAAGTAATAGCCGACTTGTACT 33145 28 100.0 32 ............................ AATATCTTGAACCCATCACCTCCCGTGCGGAA 33085 28 100.0 32 ............................ TTGATGAGGTTGGGGCTAGATTTGGTAAATAC 33025 28 100.0 32 ............................ TGGCCCCCTGCTTTGTTTGATGGTTTATGTTA 32965 28 100.0 32 ............................ TGTTTCGATACCGCGAATGTCTGATAGGTTTA 32905 28 100.0 32 ............................ TGAAACCACCATAGCTTCAAGTTCAGCACCTT 32845 28 96.4 32 ........G................... TTACATGCTTCAGAATATGACCGATGCTAATG 32785 27 85.7 0 ................A.T-......T. | CTA [32762] ========== ====== ====== ====== ============================ ================================= ================== 53 28 99.7 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : TGAGTTACTTATGGATCAACCTTGGCTAAAAGGGCTGAGAGATTACACTCAAGTTGGCGATGTGCTGCCCGTTCCATCCGATCTAATTGGTTATCGTACTGTTTCGCGGCTGCAAAAGAAAAGCCCGCAAAACTTGCGTAAGCGATCCATTGCAAAAGGTTGGTTAAGAGAGGAAGAAGCACGGCACAAAATTCCTGATACCAAACAACCACAATTGGATTTACCGTATTTGCAGTTGCAAAGCCTTTCTAATAAAAACGTACTGCGTATTTATGTGAAGCATGGTGATATTACCCAGCAAGCCGTAAACGGTGAATACTCTAGCTATGGTTTTAGTTCACAAGCAACTATTCCTTGGTTCTAGCTTTTTTACCCTATTTTTTTGCTACTTGTAACTCATTGATTTTTAACTAGTGAGTAGGGTAGTTAAAAAATAGGGTTTTTCTTGTTTATTTCCCTCAAGCTCTTTAACAATCAAGCCTTCAGCGATAAAATTAACG # Right flank : GCAACAAAGCCGACATAAGTCGGCTTTCTTTAGGGTGAATTAATTATGAGGGCAGGGGGAACTGCGTTAGGCCATCATAATGTTAGCGATCATCGCTGAAAGGATACTTACCAAGGTTGAACCATAAAGTAAGCGCAGGCCGAAGCGTGCAACAAGGTTACCTTTTTCTTCGTTCACCCCTTTAACAGCACCAGCAATAATACCGATAGAGCTAAAGTTAGCGAATGACACCAAGAAGATAGAAATTGTACCAACCGTATGAGCAGATAGGGTATCTAGTTGCTCTTGTAGCGCCATCATTGCCACAAACTCGTTCGAAACTAACTTGGTAGCCATAATACTACCGGCTTGCAGTGCTTCGCTTGCAGGAATACCCATCAGCCAAGCGACAGGGTAGAATACATAGCCAATCAAGTCTTGGAAGCTAATACCTAGCGCTACAGTAAAGCCTTTGTTGATCATGGCAATCAGTGAGATAAAGCCAATCAGCATTGCAGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25200-28411 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOIF01000008.1 Photobacterium sanguinicancri strain CAIM 1827 CAIM1827T_008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25200 28 100.0 32 ............................ ACCAAGTCCGGCAGACATTCCATGCCAGTAAC 25260 28 100.0 32 ............................ CACACAACGGGCTGGAAGATTTCCGACTGTCG 25320 28 100.0 32 ............................ TTGGAGCCTTGCTAATTCCAGTCGCTTTATTT 25380 28 100.0 32 ............................ AAACCCACCAGAGGGTAGTGAATCATGATGAT 25440 28 100.0 32 ............................ GACAAGAACGCTAATCCATGAGAACCCAAACA 25500 28 100.0 32 ............................ GTAAAGCACGTGAATTTGTCCTGGGCTTATCT 25560 28 100.0 32 ............................ GACAAGTGCTGCGATCACTTGAAAAAAGAACC 25620 28 100.0 32 ............................ AGGTGTAAACTCGGGCGGGTCATTCAGTAAAT 25680 28 100.0 32 ............................ TAAGAATGCCAGCCTGGAATGGTATCAGTTCA 25740 28 100.0 32 ............................ AGCATACCAGGAGCTTGGTGAGTACTGGAAAA 25800 28 100.0 32 ............................ CGCAGAAATGCGCGGCGACCCCGTGGAAGACC 25860 28 100.0 32 ............................ AATATGTACTGGCGCCTCACCAATCTCGCGTA 25920 28 100.0 32 ............................ ATCGAAGGCAACGTCACCGGCTTAATTAAAGG 25980 28 100.0 32 ............................ GTATTCGTTACATGCCGTGGATTAACCGCATT 26040 28 100.0 32 ............................ TAATCGCTTACGCAACAAAGCAAGGTTATGAG 26100 28 100.0 32 ............................ GCTGATACTTCGCAAATCGACCATATGTTTTT 26160 28 100.0 33 ............................ ACTTTATTAAAAGCGGTATCTGAATCGGTGTAA 26221 28 100.0 33 ............................ CAGAATCACTTTATCTTTTGTTGTGGCCATAAG 26282 28 100.0 32 ............................ AGTGATAGCAAGGTCACTGAGAGTGACAAGCA 26342 28 100.0 32 ............................ ACGGACAACTTTGTCCACGGTCAAACAGTAAT 26402 28 100.0 32 ............................ TAGTATGAACCCTGAATACTCACCACTCCAAG 26462 28 100.0 32 ............................ ATCACCGCAGCAGGGTTAGACATCAACCCCAT 26522 28 100.0 32 ............................ GTTGGAATTGGCCAAAAGATTGGACCTAAGAA 26582 28 100.0 32 ............................ GGTGGCTTTCCTTGTCAGGCGTGGTCAATGGC 26642 28 100.0 32 ............................ TTCCAGGCACGCTTGTTACTTCTGACTTATCT 26702 28 100.0 32 ............................ GGTAACTAAATCAATTGATGACCAGTCAATAT 26762 28 100.0 32 ............................ CCCTGAACACTGTTAACGAAATTCCACAACTT 26822 28 100.0 32 ............................ TGGCGAGATTGAGTTATTTTGATGTACTCACC 26882 28 100.0 32 ............................ GTAACTGTTTGTGTCGTTGTCTAGCTGCCCGA 26942 28 100.0 32 ............................ TTAAACGCGGCGAAGAAGAAATCAGCCAAATC 27002 28 100.0 32 ............................ CACGGGCTTGGCGACCATTTCCGACAGTCGGA 27062 28 100.0 32 ............................ AAACACAAACACGCGGCTTGCATCAATAGTGA 27122 28 100.0 32 ............................ ACAACAAAGCAAACGGAACTCACATCAACGAT 27182 28 100.0 32 ............................ ATGCGCTGAGCAAATGAACGTGCATTCTCAGA 27242 28 100.0 32 ............................ ATTGATGTGGTATGCGCAAGTATCCAGCTAGA 27302 28 100.0 32 ............................ CCAGCCCTACATACTCTGTTGTTGGTGGTCTT 27362 28 100.0 32 ............................ GTTCATCATCATGTTGTCGAATGCTTCACCAA 27422 28 100.0 32 ............................ AATTACACCCCACTCACTGACTGAAAATGCAC 27482 28 100.0 32 ............................ CACACGTCAAAACATTTAAAAGACACTTAGAA 27542 28 100.0 32 ............................ TGTCAAACAATAACGAAGATATGATAAAAAAG 27602 28 100.0 32 ............................ AGGTACATGCGGTGAGATGGTTGCACACCTGC 27662 28 100.0 32 ............................ TATGAACCAAGGTACGAAAGCAGAAGGCTTGC 27722 28 100.0 32 ............................ TTACTTGCTCACCGTGGTATCTGCGACCGATA 27782 28 100.0 32 ............................ AGTAAGCTACACGGGTTATGCGTCCAAATAAT 27842 28 100.0 32 ............................ AAAAATCAACCCAAGCCCAGCAGAAACGATAC 27902 28 100.0 32 ............................ CGCAGATAATGAAGTAATAGCCGACTTGTACT 27962 28 100.0 32 ............................ AATATCTTGAACCCATCACCTCCCGTGCGGAA 28022 28 100.0 32 ............................ TTGATGAGGTTGGGGCTAGATTTGGTAAATAC 28082 28 100.0 32 ............................ TGGCCCCCTGCTTTGTTTGATGGTTTATGTTA 28142 28 100.0 32 ............................ TGGCCCCCTGCTTTGTTTGATGGTTTATGTTA 28202 28 100.0 32 ............................ TGTTTCGATACCGCGAATGTCTGATAGGTTTA 28262 28 100.0 32 ............................ TGAAACCACCATAGCTTCAAGTTCAGCACCTT 28322 28 96.4 32 ........G................... TTACATGCTTCAGAATATGACCGATGCTAATG 28382 27 85.7 0 ................A..T.-....T. | TCT [28400] ========== ====== ====== ====== ============================ ================================= ================== 54 28 99.7 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : TGAGTTACTTATGGATCAACCTTGGCTAAAAGGGCTGAGAGATTACACTCAAGTTGGCGATGTGCTGCCCGTTCCATCCGATCTAATTGGTTATCGTACTGTTTCGCGGCTGCAAAAGAAAAGCCCGCAAAACTTGCGTAAGCGATCCATTGCAAAAGGTTGGTTAAGAGAGGAAGAAGCACGGCACAAAATTCCTGATACCAAACAACCACAATTGGATTTACCGTATTTGCAGTTGCAAAGCCTTTCTAATAAAAACGTACTGCGTATTTATGTGAAGCATGGTGATATTACCCAGCAAGCCGTAAACGGTGAATACTCTAGCTATGGTTTTAGTTCACAAGCAACTATTCCTTGGTTCTAGCTTTTTTACCCTATTTTTTTGCTACTTGTAACTCATTGATTTTTAACTAGTGAGTAGGGTAGTTAAAAAATAGGGTTTTTCTTGTTTATTTCCCTCAAGCTCTTTAACAATCAAGCCTTCAGCGATAAAATTAACG # Right flank : AGCAACAAAGCCGACATAAGTCGGCTTTCTTTAGGGTGAATTAATTATGAGGGCAGGGGGAACTGCGTTAGGCCATCATAATGTTAGCGATCATCGCTGAAAGGATACTTACCAAGGTTGAACCATAAAGTAAGCGCAGGCCGAAGCGTGCAACAAGGTTACCTTTTTCTTCGTTCACCCCTTTAACAGCACCAGCAATAATACCGATAGAGCTAAAGTTAGCGAATGACACCAAGAAGATAGAAATTGTACCAACCGTATGAGCAGATAGGGTATCTAGTTGCTCTTGTAGCGCCATCATTGCCACAAACTCGTTCGAAACTAACTTGGTAGCCATAATACTACCGGCTTGCAGTGCTTCGCTTGCAGGAATACCCATCAGCCAAGCGACAGGGTAGAATACATAGCCAATCAAGTCTTGGAAGCTAATACCTAGCGCTACAGTAAAGCCTTTGTTGATCATGGCAATCAGTGAGATAAAGCCAATCAGCATTGCAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //