Array 1 32330-34741 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNXH01000009.1 Streptococcus suis strain 10-36905 Suis36905_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 32330 36 100.0 30 .................................... CAAGGAAGTCTACGATGTAGATTACTATCA 32396 36 100.0 30 .................................... AGTGAGCGTTGAGCGATCGAATTTGACGAT 32462 36 100.0 30 .................................... TCCATCTTCACTTTATACAACCGCTGTCCA 32528 36 100.0 30 .................................... AGAGGCACTTGACATACTGGATAGTGTGGT 32594 36 100.0 30 .................................... ACTTGGAATTGTTGCACGGGCACTGTTGCG 32660 36 100.0 30 .................................... GTGGAAAGTTCAAACAATTCATTTAAGTAT 32726 36 100.0 30 .................................... GTCCGTCTTATCAGTCCGATATTCCTGTAT 32792 36 100.0 30 .................................... AAAAGTTTCGATTTCTTCAGCCGTCATCGC 32858 36 100.0 30 .................................... GTACTTCTCGAATGAAAGGTCTATCCTGCT 32924 36 100.0 30 .................................... TGCCTTTACTATTCTTATCTACAAGTATTT 32990 36 100.0 30 .................................... ATCCATTTCATGCCATAAGCATGTAAGAGT 33056 36 100.0 30 .................................... ATTTAAATAATCAATAATTTCAAACATTAT 33122 36 100.0 30 .................................... GTTAATTTGATTATAGGTGGGCGTGGTATT 33188 36 100.0 30 .................................... TCTGCTCGTTTATACATTCCTTTTGCGAAC 33254 36 100.0 30 .................................... CATTGTCAATATGTATGTGACACGTGACGC 33320 36 100.0 30 .................................... ATGTCGTCTAAGGGCTTCACCCAACAATCC 33386 36 100.0 30 .................................... CAATAATGAGTGCCAACGTTGCGTGCGAGC 33452 36 100.0 30 .................................... GATGCCAGCAAATAACTTGCCAGTCAGCTT 33518 36 100.0 30 .................................... TTACCCTATCTACATCCAATACATAAATAA 33584 36 100.0 30 .................................... GACAGGTGGCTTGACAGGTAGCTTGAATAG 33650 36 100.0 30 .................................... AATGTTCCAATAGTTGTTGTTGTGTTGTTT 33716 36 100.0 30 .................................... TGAAGATGGTAGCACCTACCAAGAGACATT 33782 36 100.0 31 .................................... TGAGCCCAACCAGAGCCAACACCTTCTTTAA 33849 36 100.0 30 .................................... GAAGAGCTGGTCCTGGGAGAATACAGGTGC 33915 36 100.0 30 .................................... GACGGATTATTGAAGTTGGTGAAAAATGTG 33981 36 100.0 30 .................................... GAATCCTGTCGCGGATTGCGCTAAGGCCAT 34047 36 100.0 30 .................................... AACATTTGTCTGTGCTGGTTTAGGAGCTCT 34113 36 100.0 30 .................................... CCAGGTCTGATGGCTAAATTCCGGAACTCT 34179 36 100.0 30 .................................... GGCCAATTTGGCAAACATGGCTGTTATCAA 34245 36 100.0 29 .................................... GTCCTGATGGACGGTAAGCACAGTATCGT 34310 36 100.0 30 .................................... CAGCTATCAACCAGTCTGGCATTGTCAAGT 34376 36 100.0 30 .................................... TACCAACTAACGCTCCGTGACCAGCACCAA 34442 36 100.0 30 .................................... AAGAGTGAACGTTGCTACCGCTACATTAGA 34508 36 100.0 30 .................................... TGTATAGCTGGCTATTACTATTTACTGCTT 34574 36 100.0 30 .................................... AGGTTGACCTTGAATGCCCTGCAATCCCTG 34640 36 100.0 30 .................................... AGACTTTATAACACTGGTCTTCCCCAGTCC 34706 36 97.2 0 ..............................T..... | ========== ====== ====== ====== ==================================== =============================== ================== 37 36 99.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTTTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACAGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTGCAATCGGAAAATATGGTAAAATAAATATATACGGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGAGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CATACCTACGATATTTTTGATAATTCTTTCTAATTTTTCTTCTCCTCTTTTTTAAATTTTCTTATAATAACTCACCCACTTCATGCTATAATAGTTATATGAGTTTTTAAAAGGAGCATGAAATGTCAAACTTAAAAGAGCAGGTTGGTATTAAGGCGGCGGAATTTGTAACGGATGGTATGGTTGTTGGTCTAGGGACTGGTTCTACAGCTTACTATTTTGTGAAAGAAATTGGCCGTCGGGTTGTGGAGGAGGGGTTACAAATTATTGGTGTAACGACCTCGCATGCTACGGCAGAGCATGCTGCGTCCCTTGGGATTCCACTAAAAAATATTGATGAAGTTGAGTATGTAGACTTAACGGTAGATGGGGCTGATGAAGTAGATGGAGCCTTTAATGGAATCAAAGGTGGCGGTGCGGCCTTATTAATGGAGAAAATTGTTGCGGTCAATAGTAAAGATTGCATCTGGATTGTTGATGAATCCAAAGTAGTTGAAACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //