Array 1 442146-442656 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031316.1 Serratia marcescens strain N4-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 442146 28 100.0 32 ............................ GCTGACGATCAAGCCTTCCTCTTCGCCAACTT 442206 28 100.0 32 ............................ TACAGCTGTACCGCCGGAAGTTAGAGCGGCAC 442266 28 100.0 32 ............................ ACGATGAAGTAGACCGACGCACGCGCCTTATC 442326 28 100.0 32 ............................ AAAGGTTACGCCATGCGCCATGGATCGGTGGT 442386 28 100.0 32 ............................ TTCGGCGCTGCCGATGGTGCTGCGCAGATCGT 442446 28 100.0 32 ............................ AGGCCGACAATATTTACGCTGCCGAAGCGATA 442506 28 100.0 32 ............................ TGTCAGATTGTACCCGGCAGTAATTCCGTTAT 442566 28 100.0 32 ............................ TTGCCACGGGTGCGGAACAATTGCCCGTCGAT 442626 28 96.4 0 ....................A....... | A,A,G [442646,442649,442652] ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCGCCTATGGCCTGCACTGCCGCTGGCCGGAGACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGTGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTCTAGCGCCCGGCAACAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTGAACAATTCAGTTCATCTGTCGTGTCTCTGCGTCGCAGTGAGACGGATGGTGATACCAAAGAGGGAACCTATAATTCCCCCTAAAATTTAGAAATGTCACCTTATTCCATTCTTGATTGCTGAACCCTTTTTTGAATGCCATTCTTAATTGATTGATTTAAAGTAATATTTTTAAACGTTTTAAAAAAGGCTTTTTGGACGGGTAATTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAGTATTCAACG # Right flank : AAAGTAATATGTATTTGGCTCATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTGTCCGATTGATGGATATTGATTCGGTTGCAACGGATTTCCTTGGAGAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATAAAACAATGAAGAATGCCCTCTCTTCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGATGAAGGAAAACAGTCCCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGCGGCGGAGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 451133-452179 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031316.1 Serratia marcescens strain N4-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 451133 28 100.0 32 ............................ CACTTCGATGCAGGCTTCAACGGTTTGCAAAA 451193 28 100.0 32 ............................ GACGAAATCAGATTGAGGATCTCGGCAAGCGT 451253 28 100.0 32 ............................ GGTTCAACGCCGGATTCTGTCGCAAACCTCCT 451313 28 100.0 32 ............................ CTTGTCGGTAGACCAGATGCGAATATTCCCGT 451373 28 100.0 32 ............................ CGTGGGCGAGGGGTAGAAAAACAGTTCTACCG 451433 28 100.0 32 ............................ AGATTGACGACGAGATCAGCAATCTGCTCAGC 451493 28 100.0 32 ............................ ATAATGCCATCAAGCACCGTCAGCGACGGGAT 451553 28 100.0 32 ............................ GAAGTGGTTACGATGAACAAAACGCTGACGGT 451613 28 100.0 32 ............................ TGCCACGAAGGCCCGGTAAATTGCGTACCGTC 451673 28 100.0 32 ............................ AGCAATGGCGCATGGCCGAGATGTCTCGGCAG 451733 28 100.0 32 ............................ AGCCAGAAACGCCAGCCCACGCCCTTCGATGT 451793 28 100.0 32 ............................ TGCTGCGCGCCTGATTCAGTCATCTCATCCAC 451853 28 96.4 32 ...........T................ GTGGCACCCGTACCGGCAGGCCGTCTGGCAGG 451913 28 96.4 32 ...........T................ AAAGAGGCGACGCGCAATATTGGTGTTGGCAA 451973 28 96.4 32 ...........T................ CGGAAAAGTTGGCGGTCGCGCTGCGAATGGGA 452033 28 96.4 32 ...........T................ TCAAGGTGGTCACCGGCAATCCGGGCAAACGT 452093 28 96.4 32 ...........T................ TTCGGCGGCCTGCCGCGAGCGTCTAGCCATCA 452153 27 78.6 0 ...........TCC......-..T...T | ========== ====== ====== ====== ============================ ================================ ================== 18 28 97.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGCGCTGACGGCGCTGGGGGGATTCGACTGGCTTAAAGGACTGCGGGACTATACCGACCTATCGCCCATCCAGGCCGTGCCTGCTGAGGCGGCGTTCCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTTGAGCGTATACGCCGCCGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGGTAGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAAAGTCTCTCCACCGGACAACACTTCCGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCTACCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGAATTTGCCTGTTGTTCTTTAATAATCAGTTTGTTAGTGATTTTTTTGTTCA # Right flank : TAGTAGGGATAAAACTTTACCGACACCTATTAACCAGTAAGCAAATACCCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCACCCACCTGGCAGTGAAACGCCAGCGTCAGCTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGGTGCCAGGGAGTGGGGGTAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGAGCCTTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAAACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //