Array 1 42871-43925 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBV01000017.1 Escherichia coli strain MOD1-EC6152 MOD1-EC6152_17_length_109405_cov_32.9053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 42871 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 42932 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 42993 29 100.0 32 ............................. TCTGCCAGTTCATTCAGGGCTATCGCCAGCTC 43054 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 43115 29 100.0 32 ............................. CATAATGAAATTGGCCTCAAATGAGGCCAATT 43176 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 43237 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 43298 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 43359 29 100.0 32 ............................. GAGATTGCGACGCTCCGTCAGCGCATCACAGT 43420 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 43481 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 43542 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 43603 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 43664 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 43725 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 43786 29 100.0 82 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTTGAGAGCGGGGATAAACCGCCTCTCAATTTGTAACGTCTGCAATGTCAGGC 43897 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================================================================== ================== 17 29 99.8 35 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69625-71241 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBV01000017.1 Escherichia coli strain MOD1-EC6152 MOD1-EC6152_17_length_109405_cov_32.9053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69625 29 100.0 32 ............................. GTTCCACGGCATCAGTTACCTCCCCAGCCGTT 69686 29 100.0 33 ............................. TCCTCGAGTTTATTTGCTGCTGCGACCGCCTGC 69748 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 69809 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 69870 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 69931 29 100.0 32 ............................. GTGGTGTCTGGTCTGTCGTTCACTCCCGCAGT 69992 29 96.6 32 ..........................T.. GTTATCCCACGGCTTACCAGGTACTTTTCTCC 70053 29 100.0 32 ............................. GAATCCGCATAAGGAAATATAAATGGAACGAT 70114 29 100.0 32 ............................. AATTAATTGCCTCGCCTTTTCAGTCGTCGCCG 70175 29 100.0 32 ............................. CCTGTGAGCCTGTCAGCGTCGAATAAATATAA 70236 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 70297 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 70358 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 70419 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 70480 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGCGGGCT 70541 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 70602 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 70663 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 70725 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 70786 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 70847 29 100.0 32 ............................. CAATTCATAAATTAATTTACTATTTTGAGTGC 70908 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 70969 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 71030 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 71091 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 71152 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 71213 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //