Array 1 846200-848613 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020402.2 Neisseria meningitidis strain FDAARGOS_215 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 846200 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 846266 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 846332 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 846398 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 846464 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 846530 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 846596 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 846662 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 846728 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 846794 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 846860 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 846926 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 846992 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 847058 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 847124 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 847190 36 100.0 30 .................................... AAATTGTATTAGCTTTTGCACAAATTTATC 847256 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 847322 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTGTACG 847388 36 100.0 30 .................................... CTTCCGCACTTCCAGGGGTTAAATCGGGAC 847454 36 100.0 30 .................................... ACGCTTACCATCAACACGAAAATCGGTAAC 847520 36 100.0 30 .................................... ACGCTTACCATCAACACGAAAATCGGTAAC 847586 36 100.0 30 .................................... ATCATGACATCCTCAGATTTAGTATTCAGA 847652 36 100.0 30 .................................... ATTATTTTTGATTTTGATTTTTTTCGTACA 847718 36 100.0 30 .................................... ATCATGACATCCTCAGATTTAGTATTCAGA 847784 36 100.0 30 .................................... ATTATTTTTGATTTTGATTTTTTTCGTACA 847850 36 100.0 30 .................................... GCGGGTTTCCTGTGTGGCGCGTGAATTTAA 847916 36 100.0 30 .................................... AGATTGCGACATTGAAGAATGTAGCGACTT 847982 36 100.0 30 .................................... CCAAAAAATCTACACAAGCATGGAAATCAC 848048 36 100.0 30 .................................... ATACGCGCCTCGCACTTGTCCACTCGAGCA 848114 36 100.0 30 .................................... ACCTGTTCCGTCCTTTGCTGTTCGTCCTTA 848180 36 100.0 30 .................................... CCTGAGCATCAAAACAGGCGGAAAATTGCT 848246 36 100.0 30 .................................... GACAGCCAACAGCACGAAAGCAACGGCGAA 848312 36 100.0 30 .................................... CCCTTCGCTGTATCAAAGTCAGAGAAAGCA 848378 36 100.0 30 .................................... CCGGGATAACCGGTTGCCTTTATGTATTTG 848444 36 100.0 32 .................................... TACATCGACGAAATCGCGCGCGCGCGCACTTT 848512 36 100.0 30 .................................... TCCGTATAGATATGGTTGACATCTACCGCG 848578 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 37 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //