Array 1 2529770-2528546 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP062127.1 Listeria monocytogenes FSL J1-208 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   2529769	    36	 100.0	    30	....................................	TGGAAAGCTCTGCAATCTAAAACACTCAAT	
   2529703	    36	 100.0	    30	....................................	GTGAAGCTAGATGACGGTTTCAAAGCACCG	
   2529637	    36	 100.0	    30	....................................	TATGCTTCTAATAAACTGTTTGCTAGGGTG	
   2529571	    36	 100.0	    30	....................................	GGGGATTCAGATTTTAATGGCATTAATCGA	
   2529505	    36	 100.0	    30	....................................	ATTTGTCCATATCGAGCTTACTTTGCAGAG	
   2529439	    36	 100.0	    30	....................................	TGTTTTTGAAAGTGAGACAATTGAAAGTAT	
   2529373	    36	 100.0	    30	....................................	AAACAGCGTTGAGATTCGACACAGTCAAAG	
   2529307	    36	 100.0	    30	....................................	ATGTTGCTAAAAACGCATTTAAACAGTTTG	
   2529241	    36	 100.0	    30	....................................	ATAAGTTTTAAAAAAGAAAACGGAAAATAC	
   2529175	    36	 100.0	    30	....................................	TTTTTACACCTGCAAACGCACTTTCGAAAT	
   2529109	    36	 100.0	    30	....................................	ATTCTTTTTGCTCCATTTCATCAATTACAT	
   2529043	    36	 100.0	    30	....................................	AATATTTTTCATTAGAAGAAGATGTAAAAG	
   2528977	    36	 100.0	    30	....................................	AGGTTTAGCACCAACTTTGACGACGATGCA	
   2528911	    36	 100.0	    30	....................................	TCGAAAACGATTACTACTATACTCGGTTAT	
   2528845	    36	 100.0	    30	....................................	CCATTAGCAATTCTTTTGAATACACCGCGC	
   2528779	    36	 100.0	    30	....................................	ATGTGTTGAAGGCTGGAGAACATTTCAAGA	
   2528713	    36	 100.0	    30	....................................	ATGAACGAATATCAAAAAAATAAGGAGATT	
   2528647	    36	 100.0	    30	....................................	AAATAGAGTTTTCTACCAAATGAGTCACTT	
   2528581	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        19	    36	 100.0	    30	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	                              	       

# Left flank :   TGACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAGCCTAGAAAGATAAAAGGATCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAGTAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG
# Right flank :  GCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGAATTTAACTATCGAAAATCTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAACCCCCAACCATGAAAAAAACCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGACACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAATAATATCAAAATAAAAACCGATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGATTTCCCAATCCAAGAAACCTCACCAACCCAAATAGATCCCAAATACGTACATAAAATC

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.80,-1.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//