Array 1 18592-23880 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIAQ01000019.1 Methanolobus vulcani strain B1d Joined_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 18592 37 100.0 36 ..................................... ATAAATTTCAGTGGATCGCAAGCATGATACCTGAAT 18665 37 100.0 37 ..................................... CCTCAATACCTTTGCCGCCTGAAATGGTGCATAAGAC 18739 37 100.0 35 ..................................... ATGTTGGATGTTCAAATGCCGAACTAAGACTTATT 18811 37 100.0 35 ..................................... AGGTTCCTACTGTAAGTGTCTGTGGCGTTGTCTCC 18883 37 100.0 37 ..................................... CCGTAAATTCAGAATTGCCAGCAGCAGATGTGGTTGA 18957 37 100.0 38 ..................................... AGAGATACGCGGCTGCTGACTTAAGGCGTGGTGGTGCT 19032 37 100.0 36 ..................................... AAATCTCATCTCCTCTTCGGCTTCATTAAATTCAAA 19105 37 100.0 36 ..................................... TATCGATGGTGCATCCGGTAATGTTCCTGAAATATG 19178 37 100.0 35 ..................................... TGTTAACAATACCGTCCACAACATCAACTTCCGTG 19250 37 100.0 36 ..................................... AGCAATTCGACCACAATATATGCTACTGTGAGTACG 19323 37 100.0 37 ..................................... TCCTCTTCGTGGATGAGAAACAGATCAATCTCATAGA 19397 37 100.0 37 ..................................... AGATCGTATCCGCAATCGGTGCATGGATACCATTTAC 19471 37 100.0 37 ..................................... TGTATTCGTGAACAGATGACGAGTTCCAACCCAAGAA 19545 37 100.0 37 ..................................... CTCTTGTACCTTGAAGACAAGACTGCTTATGCCATTT 19619 37 100.0 37 ..................................... AGTTCGAGCTAGAAATCACCCTCGCGGAAATCGTGGC 19693 37 100.0 36 ..................................... TTGTTCTTCCTATACCGAACATGTAGATTCAGCCTC 19766 37 100.0 35 ..................................... CGGAAACTGATAAGGGTGTTCTGCTTGAACCTGCA 19838 37 100.0 36 ..................................... ACTTCGATAATGGGTGACTTCTTTACGGCCTTTGAT 19911 37 100.0 36 ..................................... TTAACTCACTGTGGTATTCTGGGTGATGAAGATAAC 19984 37 100.0 37 ..................................... TAATGGAATTCAACAACTATTCACAATATAGACAAAT 20058 37 100.0 37 ..................................... TAGAGTAATTGTCTGGTTGCCTCTGCATCCGCGAGTG 20132 37 100.0 36 ..................................... CACGTGTGCTGGTGTTTGCCTGGTGTCCCAGGACGT 20205 37 100.0 37 ..................................... AATGAAACCTCTTGATCATCCCATCACCTACACCCAA 20279 37 100.0 34 ..................................... AGTTAGGAGAGGTAAAACAATGTGGGCTACCCGG 20350 37 100.0 35 ..................................... AGATTGTAAATGATTACACCGAAGACAGGAAAATC 20422 37 100.0 35 ..................................... CATTTACACGCACGTTCTTACGTGCAATGTCTTCG 20494 37 100.0 36 ..................................... AGAGAGACGGGTAAGTGGAAGACCGTGGCACTCACA 20567 37 100.0 36 ..................................... AGTAATTCGACCACAATATATAGCATTGTGAGTCCG 20640 37 100.0 34 ..................................... ATGCTTTTGTGTAATGGTGATGGCAAGAGAAGGG 20711 37 100.0 35 ..................................... TTATCTTGACACTGAAAGGAACCTCACAGAGGATG 20783 37 100.0 35 ..................................... TAGTAATTGGAGGGGATTGAACCTTAATACTGATG 20855 37 100.0 35 ..................................... CCGATGAAGACGACGTATCTGTCGATGCCGATGAT 20927 37 100.0 36 ..................................... GGCTATCTTTCCAGGTTCCATCTGCAATTGCTTCCT 21000 37 100.0 37 ..................................... ACCGCCTCATTTCTTCATTTTGAACTGAGACTTAAAC 21074 37 100.0 35 ..................................... CCTAAGGATCGTTTCGGAACACATCTTTTGAACCT 21146 37 100.0 36 ..................................... CTTGGAGGAGTGATTTGATGAAAGGAATTGATAAGA 21219 37 100.0 36 ..................................... GAAAAAGATATCTCCGGCTTAAAAAACAGTACCACT 21292 37 100.0 35 ..................................... TGAAACTCTACTTATAATAATTGCGTTCTGTGAAT 21364 37 100.0 36 ..................................... GATTATCATGGAATATCCGAGGATGATGAGTATCCA 21437 37 100.0 37 ..................................... CAAAACATACGGTGTCAATTACATAAGCTCAGAACTA 21511 37 100.0 35 ..................................... GCTATCCCTGAAAGGACACTACGCAACCATATTAA 21583 37 100.0 37 ..................................... CTACAAGATAGTACATTGCAACAAAAGCAGCAGCAGG 21657 37 100.0 35 ..................................... AGTCCTACTTTCAAGGATATCCCCTCGAACATAGT 21729 37 100.0 35 ..................................... CATCGTATTTGAATGCCCTCTTACATTCGCGAATG 21801 37 100.0 36 ..................................... ATCTTCAAGAAAACCTGTAAAGCTCTAGCAGCTTCA 21874 37 100.0 36 ..................................... TGGCTGCGACCTTATTTCTAAGGCTTTCAGTTGTAG 21947 37 100.0 37 ..................................... ATTCAGGATGTCCTGAAACTGACGAACTGAAAGAATA 22021 37 100.0 36 ..................................... GCTGTTGCCGGTGCCGGTTATCTGATATATAAGAAA 22094 37 100.0 34 ..................................... ATTTTAGTTTGGATGGAAGAAACAGGAAAAAAAT 22165 37 100.0 37 ..................................... TATTATAGATTATCATAGAGTACATAGAGTACTATGA 22239 37 100.0 36 ..................................... TTCTAACCCTATTCTTAGCTATCCGATCTGTTTACT 22312 37 100.0 36 ..................................... TCCTTGATACTATTAATCTTTTCTTCTGCACCACCG 22385 37 100.0 36 ..................................... GACATAATAAGAAGAAGTTAAAGAACATATAAAAGG 22458 37 100.0 35 ..................................... TGGTCCTTCACTTCCACAGCTGGCAGAGCTTCCAC 22530 37 100.0 36 ..................................... GTTCATCTCCACACGTGACATTTTGACGAAATTCTT 22603 37 100.0 36 ..................................... TATTTTTATAAATCCTGTTCAGGATCCCGGGTATTC 22676 37 100.0 36 ..................................... TTGCCGTATTATCATCTCCTCATTGAATCCTTGAGA 22749 37 100.0 35 ..................................... TTGCTTTTCCTATGCCGAACATTTAGATTCAGCCT 22821 37 100.0 35 ..................................... AAAAAAGATTGAGGAAGCTTGACGGTAAGCTCAGA 22893 37 100.0 36 ..................................... TAAAATAGCCTTCCGGGGCATCCATTGAGAAGGATG 22966 37 100.0 36 ..................................... TCAGAACATAGATAATAGATATAATCCCCCTCAGCC 23039 37 100.0 38 ..................................... AGCCCTTCGATCATTCTGTCTATTTCTTCTTGTTTCAT 23114 37 100.0 37 ..................................... GAAAAATAGTAAAATATCCAGAAAATGCAGGCAAGTT 23188 37 100.0 36 ..................................... AACGGAGTAGCTTAAGCTCTCTTTTTTTTATCAAAA 23261 37 100.0 36 ..................................... CATTCTGGGAGTTGCACCCATGTCTTTTACAGGCGG 23334 37 97.3 35 ..................C.................. TTACATACTCGTTTTTGAGGTGGCTTACATGGCTG 23406 37 97.3 36 ..................C.................. TGCCGAGGTTATGAGGGCACAGTATACCAGGCAAGA 23479 37 97.3 37 ..................C.................. ACTGATTACGGAGGTATAACATGGTAACAAGTACTAA 23553 37 97.3 34 ..................C.................. TAGAGGATGTTTTTCAATATCGGGGAATGGATGG 23624 37 97.3 36 ..................C.................. GTCATACAGATAACAGCACCAGCAAGCCATTCCTGA 23697 37 97.3 36 ..................C.................. AATTAGTTTCAGATGAAACAACAACTTCATAATAAC 23770 37 97.3 35 ..................C.................. TGACAATGCATTAAGATAAATTCTTCCGTTAGTTC 23842 37 78.4 0 ...T........A.....C.GT........G...TG. | TA [23871] ========== ====== ====== ====== ===================================== ====================================== ================== 73 37 99.4 36 ATTCAAAATCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAATCCGAAGTCTATGTCGTTTCCAAAGCCCACCACATAAAAGGAATAGTGGATGAAGTACTTTTTTTAGAAGATAATACTGCTGCTCCTTTGGAATATAAGTTTGCAGAATATAAAGATAAGGTATTCTCAACTTACAAATATCAACTTGTTCTACAGGCATTGTTGATAAAAGAGAATTACAACATAGAAGTTCAAAAAGGATATATCTGCTATACTCGTAGTAATAGTATGATAAAGGAATTAGCTTTTAAGTTATCAGATTTCAAAAAGGCTAATGACATCATCACAGATATTATACAGATAGTTGACAAAGGAAAATACCCTAAAGCAACAAAATCAAAGAACAAATGTATTGATTGTTGTTACAGAAATATATGTGCATGACATAATTATCTTATACTTATAAGGAGTTCAATAATTTTGCAACAAGAATCAGCGTGTTCTGAAAGAAGCAATTTAACTGGTTATTTTGCTAAAAGCAGGAAATATTTGTGCT # Right flank : CGGGAGGTGCGATTCGAACGCACGAACTCCTACGAGAATGGGTCCTAAGCCCATCGCCTTTGGCCAAGCTGGGCAACCCCCGCACAAAAGAGTAGTCATTAAATATATTGTTCACATATTAATATTACGCAATGAGATATCTATTTTTCATAGAAATGCTATGAAGCCCTATGAATATGGTCCTAAGCCCTGCGCCTTTGGCCAGGCTGGGCAACCCCCGCAAAAGAAGCAACTAACAGATAACACACTGACATATTAATGTTACGTATAATAACATATTTTTCTAGTTCTGAATCCTGATTCTACAATTATCCGATTGACTTAAAAGCTGCAAGTGCCACGTTCCTTTCCTTAGAATGATTCACAATAGGCTGCGGATAATCCACTCCAAGAAGCTGCTGTCCCTTATCCATAGAATGAATGGCTTTTGGTGAAAGACCTTCCAACTCTGGAATCCATTTTTTAATATACAGACACTCAGGATCGAACTTCTTCTGCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAAATCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 265038-262122 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIAQ01000019.1 Methanolobus vulcani strain B1d Joined_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 265037 30 90.0 41 ...........................GTA TGAGAACTCTCCTTGCTTCACCGGTTGAAAGGTGTTAAAAG 264966 30 90.0 36 ...........................GTT GATTTATACACAGGTCTGTATAACATGTCTGTTGTC 264897 27 90.0 5 ...........................--- ATTGA Deletion [264871] 264873 30 100.0 36 .............................. CTACGACTACAATCAGATAGGTCAAGAGGTTCTGGA 264807 30 100.0 35 .............................. GAATATATCATAGGGAAATATGGCAAGAAATATTC 264742 30 100.0 37 .............................. GAAAGATCCTAAGTTTTGTCTGGGTCAGCGTTACAGA 264675 30 100.0 35 .............................. GCCGTCAGGTTGGGTTGTCATGCTGCTCTTAATGA 264610 30 100.0 37 .............................. GCCGTCAGGTTGGGTTGTCATGCTGCTCTTAATGATC 264543 30 100.0 36 .............................. GTTAGTACAAATCTTTCGCTTACCATTTTCTTAACC 264477 30 100.0 37 .............................. GAGGATGCTGTTAAGCTCATAGATAAGAGAAATGCAC 264410 30 100.0 38 .............................. GTTGCATTATTATGAAGCTCAACAAGTGCATTTCTCTT 264342 30 100.0 36 .............................. GAGTTTTTGAAGCTATACTCTGAAAAGCTCGCTGAA 264276 30 100.0 38 .............................. ACAAAAATAGTTACTCCGGAATATATCATAGGGAAATA 264208 30 100.0 36 .............................. TTTAATCATCGCTCCTTATCTTATTATAATAATACA 264142 30 100.0 37 .............................. TCATGGTAGTAACCCAAGTAGTTATCGCAGTCATGAT 264075 30 100.0 36 .............................. TACAAAGATCGATCATTTTCTTAAAGGACATGTACG 264009 30 100.0 37 .............................. TTGCAAGCAAGCAACATCATGCTTATCATAACGGGAT 263942 30 100.0 36 .............................. CAAATATGCAATTATCGCAAGCAATACCATAATACC 263876 30 100.0 36 .............................. GATAATCAAGTGTATCGTTAATACCCTCTTCAATGT 263810 30 100.0 35 .............................. AGAGGACCGTTAGAGCGAAGATTAACGACACATTG 263745 30 100.0 37 .............................. AGTGTTAGTGCTCGCTACTTCTGACAACAATATCAAG 263678 30 100.0 36 .............................. TTAATCAGCAACGTTTCTCCGAGCAAATACACGCCT 263612 30 100.0 36 .............................. TAGGTAAAATCTCAAGCATTGTTTTCATTTATACGC 263546 30 100.0 38 .............................. TGCAGTATTTGGGGATCACTCTTTGGGGTCTCTTTCAG 263478 30 100.0 38 .............................. GCTGCTGTGTATGGTTCCCTTTATGGCGTCCTGTTTAT 263410 30 100.0 37 .............................. CAAGCATAACAACAACATATTCGGAGTCATTAACAGG 263343 30 100.0 35 .............................. TTATAGGGCTCGAAATACTCAATAGGAATAATAGA 263278 30 100.0 38 .............................. CCAACTGCGGGCATCTTTAATACGAAAACAAGAAAAGG 263210 30 100.0 35 .............................. ATTGAATATTCGGGAGATTCAAGGACATTTTCAGT 263145 30 100.0 37 .............................. TTAAACCAGTCTCCGCGACTGTAGTAATCGATTACAT 263078 30 100.0 35 .............................. TATGATAAAGCAACATCATGATACTCTTGCAATTC 263013 30 100.0 35 .............................. GTTGGAATATCAACTGGATTGGGAGAAGAACCTGG 262948 30 100.0 37 .............................. TATGATAAAGCAACATCATGATACTCTTGCAATTCGT 262881 30 100.0 36 .............................. AAGTTTCTGTTTCCACGATGGTAAACTTTGGTATTT 262815 30 100.0 36 .............................. GAGGAAGATGTCTCCAGGCTGTGGCCTGTTGATTTC 262749 30 100.0 38 .............................. CCGGAATAGTTCAAATACAATGCAGTTATGAAACCACC 262681 30 100.0 37 .............................. CAAACCCAACCACAATACTGAACGAGTCGCAAACATT 262614 30 100.0 36 .............................. AGCATTGAGTCATTAGGATCATCCAGGAGCTTAAGG 262548 30 100.0 36 .............................. ATTATAAATGAACAAGTGTGGGAAGGAACTTGCAGA 262482 30 100.0 36 .............................. GAACTTATCCTATGACCATTAGTAGACGTAACACCA 262416 30 100.0 37 .............................. GTTTGCAGACCTCTACTCTGAAAACTCTGAGGACGAG 262349 30 100.0 36 .............................. AAAGAGAAACCTGTATCAGAAAACGAACCAGCACCA 262283 30 100.0 35 .............................. TCTTTTAAGTTTGTCATTTAGAAGCCCCCTAAAAA 262218 30 100.0 37 .............................. CATAAAACCGGATACCTTCACTATCATGTATTATTCT 262151 30 83.3 0 A................A.........GTT | ========== ====== ====== ====== ============================== ========================================= ================== 45 30 99.0 36 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : GAGGAATACAAACCTCTGATTATGTGGTGGTAATATGTACGTGATCATTGTCTACGACGCGGGAACGGAAAGGCTAAACAAGATACGCATCTTCCTGAAACAATATCTTAACTGGGTTCAGAACAGTGTTTTTGAAGGGGAGCTCACTAAAGCTGAATACATGAAGGTACTTTCAAGATTGAAGGAACTGATTGATGATGATCTTGATTGCATATTTATTTATCATGTAAGGGACAAAAAATACCTTGGCATTGAAGAATTGGGCACCAGAAAAGCTGAAATTGATTCAATAATCTGATTTTTCGTGGATCTTTATATACCTTCCACCTAATCAACGTTCCACGAAATCCTTTATTTTTATTTCCGTTAAAGAGTCGATTTAAAATAGTATTAATATCTTCTTTTTAATCGATAAATCAGCGCCAAGCTAAGTTCTCATCGGTTTTGCCGCTTTAATTGTTGCAAGCTAAAAGACGCTAAAATAAGCCAAAATTCGCTTG # Right flank : ATAATATCTTATAACCTAATTATCTTAGGAGGAGAATTAACATGCCAAGATATTGTAAGATATGTGGAGCAAAAAGTGGAAGATGTAATCACCTGATAGTTGATTTTGGAGAAAGGGAAGAGGAAAACAGCAAGAATGAGGAAGATTCTCAAAGCTCTGATACCAAAAAATGATTTTTGAAATCATTTATGAAAATCTCTTTTGTAAAACGTGATTTATATGATCCTTAAATTCAAATCTTTGAGTCCTGAAATATCAGATTCTGCTTTCGTGGCTGATAATGCAATTGTGATTGGTGATGTCGTTCTGGGCGAAGAGTCCAGTGTGTGGTTTGGCGCTGTTATTCGTGGTGACGAAAATCCAATTTGCATAGGCAAACGGACAAACATCCAGGACAACGTAGTGATACACATTTCTGACACGTCTCGTGTAGACATAGGTGACGATGTGACAATTGGTCACTGTGCTGTGGTTCATGGTTGTAAGATTGCCAATAATGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : NA //