Array 1 1091911-1082256 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012174.1 Metallosphaera sedula strain ARS120-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1091910 24 100.0 39 ........................ CTCTTCAGGAGAGACCGCTTCGTCCAACAGCTTTCTATA 1091847 24 100.0 39 ........................ ATACTTTTCATGTATTGGTAAAGCGTAGTGTTCTGGATT 1091784 24 100.0 42 ........................ TTATCTGAAGTGAAAATATATACTTGAGTTTCTCCATCATAT 1091718 24 100.0 37 ........................ CACTTTTCGACTACATTAAGTAATTTCTTTTTCACTG 1091657 24 100.0 39 ........................ GTTGTCGCCCCCTATCTTCTGGCTAGGATTTTGCCAAAT 1091594 24 100.0 39 ........................ TGCTAAACCTCACAAAATACAGCTTGTATTCTCTTCTTT 1091531 24 100.0 40 ........................ GATAAAGTTAGGAAAATGTTTGATGAAATTTACAAATATT 1091467 24 100.0 40 ........................ CGTTTGTTAGAAACTATCAAGAATTTGGCTTATAAATTCT 1091403 24 100.0 42 ........................ TAATGAAAATATGGATAATATAAATTGTGGAAGATGGATAGT 1091337 24 100.0 40 ........................ GCTGACATTTTTTTCACTAAAATATAGTTCTCTCTTCTCA 1091273 24 100.0 39 ........................ TTACTGTATGTGAACACATAGACCTCTGTCAAACCGTCA 1091210 24 100.0 40 ........................ AATTTAATGTTGAATTTTCCGCCTAAACCGACTGGGGCTA 1091146 24 100.0 40 ........................ AAATAATGAAGATTATATTTTCCCCACTACGTTTTTGGGT 1091082 24 100.0 41 ........................ TCTTCTTCTTCTGTTGATCTAAATATTGCGCTAAAACAAAC 1091017 24 100.0 45 ........................ CTTCTAAAAAGTTTTCAAAACTATCCTCCTACTAACTAATTATTT 1090948 24 100.0 41 ........................ TGTTTAAGCAAAAAAAGAAGGCGCAAAGCGCCGAATAACTT 1090883 24 100.0 41 ........................ GAATGATTTGCCTTAGTTGGAATGGATCAATCACCACGTGT 1090818 24 100.0 44 ........................ GGCACTTTCATTCCGTATTGTTCTAGCAGAGGCGCGAACACTTC 1090750 24 100.0 42 ........................ AGGAATTTCCAATTAATCTATCATCTAGGAAAAAAAATCCTA 1090684 24 100.0 43 ........................ AACTGATGTCTATGCTGTTGGGTATCACAGTCCCAGTAAATCG 1090617 24 100.0 40 ........................ GATTTGGGATTAAAGACCTAAATAATGTCTCCGATCAACA 1090553 24 100.0 41 ........................ TGTATATTTCTCTATTTCTAACAAATACTTAGCTTCCGCCT 1090488 24 100.0 42 ........................ AAAGAGTACATTAAGCAAAAGTATAACGCTGAAATATTTTCA 1090422 24 100.0 41 ........................ GCGACAAGTTAAAAGATGTTTTCATCCAATAATTTATCGTG 1090357 24 100.0 38 ........................ CTTATTGCCCAGCATCTCTTCCAGATAATCCATTGCGT 1090295 24 100.0 38 ........................ TCCTGTTAGTGTGGCGAAATTGTTTATGATGTTAATAG 1090233 24 100.0 42 ........................ TTTATACATATGTCATGTCAAGTATATAAATCTTTCTCTCTC 1090167 24 100.0 41 ........................ CCCTAACATTAGCGCTTGAAGTAGTTTTTGAAGGCATTTGC 1090102 24 100.0 41 ........................ CCATCAGAACAACTATGGCAGGTGTCAACGTCAGTTATGAT 1090037 24 100.0 39 ........................ ATGTTATTGTCTGTACCTTTGAACCACCTTTCCCAATCT 1089974 24 100.0 45 ........................ GTTGGCCTTCCCATCAGCATCAGTAATTGGTAAACGTATTCCCAT 1089905 24 100.0 40 ........................ TTTGCTCCAACGCTTCATTCAATTCTTCTTTACTTCTCAT 1089841 24 100.0 40 ........................ TCCTGTAACCTCTGCTTGAGAACAAATGCAATCGCTTGAT 1089777 24 100.0 39 ........................ ATGACGAATGGAAGGTAATTCTTGACGCTTTAGGATTCA 1089714 24 100.0 39 ........................ TACTCATCTTTTAGCTTTGATCTAGCGTATGCTGGCAAT 1089651 24 100.0 36 ........................ TCACTGTCGGAGTTCCATCCGTGGCCGTCAATTGGT 1089591 24 100.0 41 ........................ AATGAGAATTTTTTACATTTTTGGATACCGATAGAGACAGT 1089526 24 100.0 39 ........................ TATGATGTCGTCAGCACGGAGGCTGGGCGCACCATACTA 1089463 24 100.0 40 ........................ CGCTGATTCAATAATGATAATGATAGTAGAAAACCTAACT 1089399 24 100.0 43 ........................ CTATTCCTATGAAATTAGTTAGCAATAGGGTAATTACGGACTG 1089332 24 100.0 41 ........................ TCAAGTAACACATTTAATGTGACGATTCATGTAACTAGCTT 1089267 24 100.0 40 ........................ CTACTGTTAGTGCTACCACTACCATGACTTGGTGGGGTGC 1089203 24 100.0 37 ........................ TACACAAAATAGTAAGTTTCCGTCGTCGGTTGTGGCT 1089142 24 100.0 40 ........................ AAAGAAGTTGAGAACAAAGAACCTTTAGTCATAAGTGAGA 1089078 24 100.0 41 ........................ CCTTCTTTTTTCCTTGTTTATTAAATAGGAACATCCCATAT 1089013 24 100.0 39 ........................ AACGATCTTGAACGTCTGAACGTCTACTGGGAGAGTGAA 1088950 24 100.0 39 ........................ ATACACAGGTGGTTAACATGGAAGTACTAAGGTTCCAGA 1088887 24 100.0 39 ........................ GGCAGAACAGAGGTATGCGTGGCAGAAACTAAGCGGGGG 1088824 24 100.0 41 ........................ ACTAGATACGCCATTGCTTCTCTCACGCATCTTTCTGCGTT 1088759 24 100.0 39 ........................ AAGTTCACTGGGGGCGTGGGGTTTAACGTTAATATCAAT 1088696 24 100.0 44 ........................ GGTGAAAAGGAAAGAGAACGGGCGGGCGAAACGGGGGCGATTTG 1088628 24 100.0 40 ........................ TTATATTTCTGCCATTTTCTGTAGATAATGCCCTGGGAAT 1088564 24 100.0 40 ........................ TTTAAGCGTTACGGCTTAGAACCATTCCCGGCGCCCGATG 1088500 24 100.0 42 ........................ GCTTCGTTTTGCCTTAGCAATAAGGCTGTAGCACTTTGTTCC 1088434 24 100.0 38 ........................ ATCCATTTCGTGAATAATGCCTTGTCTTCCACGTCAAG 1088372 24 100.0 40 ........................ GAACACACGCCTTTGCCCAGGCATGTGATAGCCTCGTACG 1088308 24 100.0 40 ........................ TTTTCTACTCAAAATTGTTGAGTAGAAAATCAAAAGACAA 1088244 24 100.0 41 ........................ ATTTCTCTGTTGGCTGTAGGTTTTGAATTTCCTTATCTGTA 1088179 24 100.0 40 ........................ TTAAAACCTCAATTTCTCTTGCGCCGCTTTCCAGAAGCAA 1088115 24 100.0 40 ........................ ACTTTACGTATTTTATCGTATGAGAAAGAGAAGAGAAAAA 1088051 24 100.0 40 ........................ TATGTATTAGCCATTTGATTTTGTAAAGCAGTTCCTGCTT 1087987 24 100.0 40 ........................ TAACGCCATCCTTGTATCATGACTATATCATTATGGAGCG 1087923 24 100.0 39 ........................ AGATGAGTGACCTAATACGTCTGATATTCGCCATGATAA 1087860 24 100.0 40 ........................ TAGGATTGCGTCCTACCTGAATGCCGTAACCTTTCAGGTG 1087796 24 100.0 39 ........................ CTCTCATGAATTTCCCCACATAGGGAGCACGTCTTAGAA 1087733 24 100.0 39 ........................ AAGCCAGAATATCTTAAGATAACACCTAAGATGTTAAAT 1087670 24 100.0 38 ........................ GAATACCTCTCCAATCAAAAGCCAACGTCCCACTGAGG 1087608 24 100.0 43 ........................ CTAGATGAGCAGTACAAGGAGGCAAGGCAAAAGATTGGTCCGT 1087541 24 100.0 42 ........................ AGTTCTACCGCTAGGTGCAAAGGGGTGTAACCATCAGGGAAG 1087475 24 100.0 37 ........................ CTACCCTCCCATCCACCTTTTTCATGAGGTTGAGAGG 1087414 24 100.0 41 ........................ TTCTAGTAATGTGGAGCGGACATGGATTTCATCTATTTTAC 1087349 24 100.0 40 ........................ AACCCCTGACCGAACTCCCTAGCCAATTTCATTAGATCGA 1087285 24 100.0 36 ........................ TCTCTTCCTTAACCATCTTCTCGATGGCTCTTCTGA 1087225 24 100.0 39 ........................ ACATGAGCGGGACGACCATCACCCCTGGGTCGTGTCCGT 1087162 24 100.0 36 ........................ TGAACTCATCAAACTCTTTCTCTTTGCCGTAAAGCT 1087102 24 100.0 39 ........................ AATGCAGGGACCGCTTTCCAGTACGATTCTGCAACAGTT 1087039 24 100.0 42 ........................ TGGTTAAATTCTGCATTCAATTTTTATCAAAATCTAGCATGT 1086973 24 100.0 40 ........................ TTGAGATTCATGATTGCAATGACGTCACGGTCGTTTTCAT 1086909 24 100.0 42 ........................ CAAGTTGAGCCAGGACCTCCTCAACTTCTTCCTCTAGGGTAT 1086843 24 100.0 41 ........................ TCTCAAGAAGAAGTTAGAGTCTCAGCCAGAGACTCAGACCG 1086778 24 100.0 40 ........................ TGAATCATGGAGAAGAAAATTTGAGAAAGGAAAAGCAAAA 1086714 24 100.0 41 ........................ GAACCTACTGGCAACTACATGAAGATTAAAGCCAGCAGACT 1086649 24 100.0 40 ........................ TACTGTGGGCCGGTGCGACCCACGGACTCAATACGGTTAG 1086585 24 100.0 42 ........................ AGATCGAGATGATTTTTTGAGAAAAATTCTAACTAAATATAA 1086519 24 100.0 38 ........................ TTTACATTCAAGACTTATTCATGGTAGATATAGCGAAG 1086457 24 100.0 40 ........................ AATATGACAGAATAATAAGTGTTGCAAAAGACTGTATGCA 1086393 24 100.0 41 ........................ TCCTTGACGGAAGGGGTATTTCACCCCCTTTGAACCCCCAT 1086328 24 100.0 40 ........................ TAATGTTCTTAGTTAATTGTTCTTTTCCAATTATCTTAAA 1086264 24 100.0 39 ........................ GGGTCAATGCAGTAATATTAGGAGGAATACCACAAGCTG 1086201 24 100.0 40 ........................ TTAAGGTGATTGCAGGGTTATATACTACCCTTATTCTCTT 1086137 24 100.0 41 ........................ ATGTAATTAATTTAAACTATGAAGGAGAGTTGGTTTATTCA 1086072 24 100.0 39 ........................ AGGTGGATATGAAGTTGTGTAAGTCATGAAAGCTAAAGT 1086009 24 100.0 42 ........................ AAGACTGGACCTCCTCTCCTCCCTAACCCTCTGGACTTGTCT 1085943 24 100.0 42 ........................ AACTAAAGAGAAATGACTACGTCAAGAAGGAGGTCCAGAGCG 1085877 24 100.0 42 ........................ TTTCTTATTATACCCTCATTACCAGTAAGAGCTACTCCTTGT 1085811 24 100.0 36 ........................ TCCCAAACTGATGAAGAATCCCTTGTCCTTTATTCC 1085751 24 100.0 40 ........................ ATTACTACTTTCTCTTACGTCGTTCCTTAAGAAATAGTAA 1085687 24 100.0 41 ........................ GAAAAGAAGCTTCCTACTCCTCCTATTGCATTTTTTACGCC 1085622 24 100.0 43 ........................ AGTAGGACAGCAGCTCCCTGCTAGAGTGGGAGAACTTCAGGTA 1085555 24 100.0 39 ........................ AGGCAAAGTACTTGGACTTCTTTGATGTAGACATGTCCA 1085492 24 100.0 40 ........................ TCAATATCTCTACCATCATATTAAGGACATAATTGACCAT 1085428 24 100.0 38 ........................ CACCGAACTTTTCAAGATTCGAACCCGTAGTCGTATTG 1085366 24 100.0 40 ........................ ACTCCATCAGGACCCTCAAGGATGAGACCAACACTCATTG 1085302 24 100.0 40 ........................ TTACCGGTTCACAGTATTCCTCTAGTTTCGTTCCGGTTAT 1085238 24 100.0 43 ........................ TCAGTTTGCAAGCAGACTAGGTTGTGATGTATTATGGTCCTTT 1085171 24 100.0 44 ........................ ACAGGGACTTCAGGCAGTACGCTCTACATCACGGAGAAGGACGT 1085103 24 100.0 38 ........................ ATTCACGAAACGTTTAATTGTATAACCGCAAAAAAAGA 1085041 24 100.0 39 ........................ TTTTTGGAAGCGTAAGTGATCAATGCATATCTTAACGAG 1084978 24 100.0 41 ........................ GTTCGAAAACCCTAGTCCAGCAGGGCAGGCTGGACAGTTGG 1084913 24 100.0 38 ........................ TCTGAGAATTAGACCTGCAACGAAAAGGCTGATCGTAA 1084851 24 100.0 40 ........................ GCTAAGATATCTTGAGTGACTACCTTGAGAGCGTCATATG 1084787 24 100.0 39 ........................ GTAATAATATATTTACATTCAGGGAACCTTTGGACCCCG 1084724 24 100.0 43 ........................ TTAATGAAGTTGTATCCTCAAACTCATAGGGGACCACTATGGG 1084657 24 100.0 42 ........................ GTCAAACTCTTTCTAACCCCCCGCTCACGGGGGAAAAATTCG 1084591 24 100.0 39 ........................ TCGTCCTCGACCAACCGCTCTATCCTCTCCGCGTCGAGA 1084528 24 100.0 45 ........................ TACAGTGATGAGTATCTTGATGAGTGTTTTGATGAGGGGGATGAT 1084459 24 100.0 41 ........................ GTACCTAATCTGAACTCTACACGGGCTTCCCCCACTAACTT 1084394 24 95.8 40 ................A....... TTCCCGCGTTGAAGAATATTCCTTCTCAACTTGTCATATA 1084330 24 100.0 39 ........................ TTCCTTCCCCAAGTTCGTTATCCCCACAAACAACACTTG 1084267 24 100.0 39 ........................ GGTACATGTCCTCGTCTTCGGGTTCAGATTCACACAACA 1084204 24 100.0 40 ........................ ATAGTTTCGAACATACTACTAGTGATCAGTGGTTTATGAC 1084140 24 100.0 40 ........................ AGATTAAGATAAATTAGAGCGACTTCGTAGTCTGCATGAA 1084076 24 100.0 41 ........................ TTTCACCATCTCGTTGTAACTCGTGAACCCAACGGTCCTAA 1084011 24 100.0 43 ........................ AAAGAAAAAAAGATCAATTACAAACTACATAAGACGAAAATAT 1083944 24 100.0 40 ........................ TAATCCCAGGGCCTTTCGGTCTTTGACTCCACATCTTCAT 1083880 24 100.0 40 ........................ TAACGATTGGAACTGAGCCGTCATCAGATACGAAGGCTTT 1083816 24 100.0 41 ........................ TAACTTTCACGATATACTCGCGTCATCCAATAACCGTATAA 1083751 24 100.0 41 ........................ TTCCCTTATTATTTTGTTCCACTCTTCTCCAGTAATTTGAT 1083686 24 95.8 39 .............G.......... TCATTTTTTGGTTTTGTATTTCTACTGTAACTTCAATTA 1083623 24 95.8 40 .............G.......... CTCGTGGTCTCAACTAAGGGTGGATCGGCTTCAGTGACCG 1083559 24 100.0 39 ........................ AGTACTTTACTTTGTGAATGGAGGAACATGGAAAGTAAG 1083496 24 100.0 39 ........................ ATTCCAAGAAGTTATCAAACAATTCCGTTTGTGAACTGT 1083433 24 100.0 40 ........................ CCTCGTCTGGAATCACTAAATCTTGCTCGTCAATTATTGA 1083369 24 100.0 42 ........................ TCAAACATGAGTCTTGTCAAAACTTTCACGGCACCGAGTGGA 1083303 24 100.0 39 ........................ CCTGCTCCTCCTGATCCATTCGCTGACGATGTACCTGGA 1083240 24 95.8 39 .............G.......... CTTGATACACCAATCACAGTGAGTAGTAATACACCGATG 1083177 24 91.7 40 .C...........G.......... GGAGCAAACGGGCAAAACGGAGCCGTGGTGGTAATCGCAT 1083113 24 95.8 39 .............G.......... TCTTTATTGCTATCTGGATTGATAGTTTTCCGTAGAACT 1083050 24 95.8 39 .............G.......... CTAATAACTGACTCTCTATCACCTTGACCATTTTTTGAA 1082987 24 95.8 42 .............G.......... AGACTGTTTTCCAATTCATTATGATAACCTTAATGAATCACG 1082921 24 95.8 40 .............G.......... AATTTTTTCTCTAACTTTCTAAGTAAAGCCTTATCATGTT 1082857 24 95.8 40 .............G.......... ATGAAAAGAATAGGTAGATCACTTTTTGGCATCATTTGAT 1082793 24 95.8 41 .............G.......... TCTAAAAATTCAATCTTCTTTTCAAGTATACTTTTTCTTCT 1082728 24 95.8 44 .............G.......... CTTCTGCTCGGTATCGTCTAAGGCAGGATTCGGTGAATCCTCAC 1082660 24 95.8 39 .............G.......... TTCGACTCGATTAGCTTCCTTACCTCTGCCAATTTCAGC 1082597 24 91.7 39 .............G.......G.. AGAAGGGTTCTGAGAAATCCCTGTAATCATTAGAAGTAA 1082534 24 95.8 40 .............G.......... AATTGCTCAAAGACTTTTTGGAGTTTTAGGTTTTGGGTCT 1082470 24 95.8 40 .............G.......... AATTGAACTAGGGCGAGAATGCCCAATATTATACCTATTA 1082406 24 91.7 41 C............G.......... TATGCGTTTTTATTACATTTTGATAGGCCGTGTCAAAATCA 1082341 24 95.8 38 .............G.......... TCACCTTCAACTGCCGAGACCATGCAGTGGTATAGAAT 1082279 24 91.7 0 .........T......A....... | ========== ====== ====== ====== ======================== ============================================= ================== 151 24 99.4 40 GTTAATCTCCTATAGAGTTGAAAG # Left flank : ATAACTCCAACCCCTGAGCTCCTCCTCAATCGGGTCCGAGGCCCTATACGAGTGGAGGAGCCTGAGTTGTCTCGTAATCTGCGACCTCATGGGTTTATGTTGGTTGGGAATCTAAAATTCATTCAAACGTGGGGGTTGAGAGACTTCCCGTGCAGTGGCGGGATTGGAGTGGGGGTGGACGGTGTGTGGGATGGGCTGATCCCTAGGAAGACCGGGACAGAGGGGAGTTGATCGTGAAGTTTAGGGCGTGAAATGATACAATTTTAGTTTGATGGGAGTAAAATATTGATTCCCTACTATAGTCCTTGAGTTAGGCTGTCCTACTATCGTGACCAGGTACGTCGTTAAAGGTATCTCATTACATTTATAGAGAATACGTTAGTGTCCCGGGAGTTGTAGGGATCTGACGAGATCTGATAAAAATTGTAAGACAATGAGACAGAAAAGATTATATAAAGGAAGAAGATAGATAATGAATAGAAGTAATATAAAAGGTATCA # Right flank : AATCACACGTTCTGATATCGGAAAGTTTACCTTTTTTACTCCCTCCCAATTATTCCCTGTGACATGCCTCATAACTCCCATCGGGTTCGACGAAAAGTTCATCGTGAGAAGTTTCCTTCGGCACGGCAAATCGAGGATCCAGGAGGTTCTCCTGGTTAAACCCTCCGCGAAAAACGAGAAGACGGAGATCGCAATCTCAAACCTGATGAAACTCCTGTCCGAGGCCTCGACCCCCCTCCAGACCCTTGAGATCAATCACGACGATTTCGTCTCCTCAGTCTCTAGAATAATGTCCTGGGTTAAGAGGTCGACTCACTCGGACTACCTCCTCAACCTATCCAGTGGAATGAGAATAGTCGACCTTGAGATCCTTACTGCCTTCCTTCTCCTCCAGATTGACGCTGAGGTTGAGGTTGAGACCGAGACCCTTCAGGGGCTCGTGACTTTCAGGGTGAAGGACCTCATCCCATATCAACTTGAGGAGAGCGACCTCAAGATCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTCCTATAGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 1097327-1100889 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012174.1 Metallosphaera sedula strain ARS120-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1097327 24 100.0 41 ........................ AAGGCGAAATGCAGAAGATGTAGTAGCAAAGACAGCTGTGA 1097392 24 100.0 40 ........................ CAACTCTCATGATTATAATCCCTCCATTTTAAAATGTATT 1097456 24 100.0 40 ........................ AAGTTTACTTCAGTTAATGAGCAAGTCAGCGCAGTGCTAA 1097520 24 100.0 39 ........................ TTATATTTACGGGTAAGACGGCGTTAACGAAGCGTTAGG 1097583 24 100.0 42 ........................ AGTTTAAACGTTACAACTCTCGTTTCCAAACACCTCGTTTGT 1097649 24 100.0 40 ........................ AAAACGAGACCTTTGGCTAAATAAACCGCACCATAGATAT 1097713 24 100.0 42 ........................ CTATGAAATTGTCGCATTCGTATGCAAAATATTTCTGGATCT 1097779 24 100.0 39 ........................ TACATATCCTTCAATTGTGATCTAGCGTATGCTGGTAGT 1097842 24 100.0 40 ........................ ATTTGGATTTTGATAATTTTCTTTTCTTTGTCATAATAAT 1097906 24 100.0 42 ........................ TATAGTTAAGTCATTTTTTCTTCTTGTGGTGGTATTACCTAT 1097972 24 100.0 40 ........................ TACCAATTTCTGCTAATAACGTGAACGTACTCTCGCTGAG 1098036 24 100.0 37 ........................ TAACTTATCCCCTACATGATTGCGAAAAAACAACAAT 1098097 24 100.0 40 ........................ TGTTTTTAAGGACCTGGAGGCAGTCCGCCATTTACCCCAC 1098161 24 100.0 39 ........................ TGAGAACAGCTGTCTTCACTGCTGACCATCGAGCGACCT 1098224 24 100.0 40 ........................ TTTTCTTTCTCATACATTACTCTTATTAGTTTACTAACAA 1098288 24 100.0 41 ........................ CTTCTTGTTCTTCTCTCTGCTTTACGCCTTCTTGTTCTTCC 1098353 24 100.0 41 ........................ TCTGTACGTGGGTCAATAAATGTCACAATCGCGTACTTCTT 1098418 24 100.0 39 ........................ ATAATAATCAACGAGGCAAACTCCATGTTCTACAAACCA 1098481 24 100.0 37 ........................ ACTAGGCAAACGATACTGAGACACAGCGGGACTGCAG 1098542 24 100.0 42 ........................ TTGGAAACACTCCGTATCAATCCTTTAGACTGCAACTCCTCA 1098608 24 100.0 40 ........................ AACATTAGTGTAAAGCCTGCAGCGTTTGCTGGAAGCACGG 1098672 24 100.0 44 ........................ TCTCGTCCTTAAATTTCAAAACTTCCATGTAGCTCGCCCCCTCT 1098740 24 100.0 40 ........................ CTTATGTACACACCACCTGAGCTAAGGAGTGTCTTAATCT 1098804 24 100.0 41 ........................ AAATGGGACGATGAGGGTGTTCAACAGATACAACACCACAG 1098869 24 100.0 44 ........................ ATTATATATAATATATGAATAATAGCCCCCGTGCTTCGCGCCTT 1098937 24 100.0 44 ........................ TCTTTTGCACTATCCATTCCGACCACATCTCTCGGCTTCGATAC 1099005 24 100.0 40 ........................ TTGACGACGTGCTTACTCTTCTTTCCAGTTCTTGTTACTT 1099069 24 100.0 43 ........................ TTATCGATAAAATCGTAAACGATTTGTTGCCTTATTACGTGAA 1099136 24 100.0 42 ........................ ACACCTCTACTAACTTTACCAAAGCCTATCATAGTCCCAACG 1099202 24 100.0 38 ........................ CCTTTATTCTTGCTATTAGATCGAATAAATCGCTCGCG 1099264 24 100.0 42 ........................ TAAGTGGACACTATTGATCACCTCAGGGCTAGATATATGCCT 1099330 24 100.0 45 ........................ TCATTGAAATACTCAGCAACTGTATCCCTTAACTCTTCCTTATTA 1099399 24 100.0 44 ........................ AGTATACCTGGGAGTGCTGATGTAGATGCGTCACCGACCACGTT 1099467 24 100.0 40 ........................ ACTACGGGTCTCAAGGTAGTCGGTGTTCTTCTAGTAGCTG 1099531 24 100.0 41 ........................ ATCGTACTTTGCGCTGTACCTTATGAACAGTGGAATGTCCC 1099596 24 100.0 41 ........................ GTAAAGGGGTTGTGTTTTACGTTTTGAGTGGTGTTTACGAC 1099661 24 100.0 39 ........................ CTAAACATATATGAGTTCATTTTTTCCGACTTTCCTAGA 1099724 24 100.0 39 ........................ TAAAGTGATAGAATAAAAGCTATTATTCCAACTATTTCT 1099787 24 95.8 40 .............G.......... CCTTGGCAACTCGGACCCCCTCAAGCGTACGGAAGAGATT 1099851 24 95.8 40 .............G.......... AAACTCTCGATCAAGACATTTATTGTCTCTTCATCTATCT 1099915 24 95.8 41 .............G.......... TCTAAGGAGGATAAAGAGGAAGATTGGGCATTTTGTTCTGT 1099980 24 95.8 40 .............G.......... TTAGTGTTTACGTATGCTCTTTGTTGAGCTAGTTGTTGAT 1100044 24 79.2 32 .............G.....TTC.C GAGGATGATTATAAGCTCAGGGAGAAGATTGT 1100100 24 95.8 38 .............G.......... ACGTAACCTGTAGATGTGTAACCAGGCTCAGACGAGAA 1100162 24 95.8 41 .............G.......... GAACATCCGCCTTATCGTTATCTTTCTTCTTGAACAGGAAC 1100227 24 95.8 39 .............G.......... TCAATTTATCATACCTACCTAGTCTTACTAAAGTACAGT 1100290 24 95.8 37 .............G.......... GTTGGACTACCTGAAGTAATCGAGCTCAGTGGAGGCA 1100351 24 95.8 40 .............G.......... GTTTTCACGTGATACTTTATGATGTCGTTGCATCTATCGA 1100415 24 95.8 41 .............G.......... AGGACATAAGGCCTTGGCCATGGTCTCAATATCCCATTCTT 1100480 24 95.8 38 .............G.......... GCACTGACGTTTACTATCTGCAGCCCACTTGGTGACTG 1100542 24 91.7 40 .............G.........T ACACTGCCTTGATGAGCGGGATGCTTCCAATTCTCCCTCT 1100606 24 95.8 41 .............G.......... AGGATTCTTCTAAATGCTGTGACAAATGTTAGAATTAGATA 1100671 24 95.8 41 .............G.......... CAACGAAGAAAGAGTCGAGAAACTAAGCAGAGTCGAGCACT 1100736 24 95.8 40 .............G.......... TATTCGTCGTACGATTCCACTTCAACAGAGTTCACAATAA 1100800 24 95.8 42 .............G.......... AGTTGCTCTAGCAGGAGAAGATCCTGCTCTTCGATTTTGAAT 1100866 24 91.7 0 G............G.......... | ========== ====== ====== ====== ======================== ============================================= ================== 56 24 98.2 40 CTTAATCTCCTATAGAGTTGAAAG # Left flank : TTTCACAATGTTTGGACTGATGAAAGGGTGATATCACCTCCGCACGAAGGGCATGAGTGGTCCCTAGTCCTTAGTACCAGATTCCTCTAAAACTAGTTTAAGTCAGGACATAAACCTCCGTGACTCCTTATGGTAGACCCACATTCGTTAGCTTATCCTCACCCTTTGCATCTTGCGCCCATCTCGCGTCTGAAAATAAGTCTTATATGATCGACCTTAGTATCCTGTGAACCTGGCATGAGCAGATCCATGTATTAATTGTGTCATTAAAAATTTATCTGAAAGTCTCTTCCCGGGAGCCGTCATGAAATGACGCTGACGTTAAGATGATATTGGCAACGATGTGGATCATTGTTCATTATCTAGATCAAGAATACGTTAAGTTCCCAGTTGTTGAAGGGATTTCATGACTTGGGATAAAAATTGATGATCGTAAGAAGAGAAAAGTATATAAGTTGGGGAGAAAATGGTAGATGTGTTGAAGAACACAAAAAGTTTCA # Right flank : GATTACACTAAATACTACGTAATATGAATAGGTACTGTGAGACGAGAGTGGACTTTTACCTTTGCGGACGGTGTTAAATTTCAGAATCAGTATCCTCTACTACGAAACAAGCCCGAAAAATTACCCACCATCTTGAGGCCCCGTTCATTACATTGATTCTTGGATCTCGTGAGATAACAACTCGTTAAGTTTCCTAGGTCACGATTCACTCAAACAAGAAAACACGTTCATTATTTCCACTTCCGGTATCAAGAGGACATCTTGAAATTGAAGTGACCTAACTCTCCTAAACATGAGGAAAGACCAGGGAACGCAGAGGTTTCCACATCACGGGATCTGGTTATCCTCTCGATATCTTACCCGTCCTCACCCCCTCTCGCCTTAAATACCTCTGAAAGTACTTTACCCCATGGAAATCGTAAAGGCCAGCCTTACCTTGATTCCCACAAGGGACGTGATCCTACCGCCGGTGACCTCGAAAGTCCTGAAGTACCTTATCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAATCTCCTATAGAGTTGAAAG # Alternate repeat : CTTAATCTCCTATGGAGTTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 1104341-1114686 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012174.1 Metallosphaera sedula strain ARS120-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================== ================== 1104341 24 100.0 40 ........................ TCTCAATCTGTAGGCCAAGCCACTATTATCATAACTCCAC 1104405 24 100.0 41 ........................ TGAATGCAAGCCTGTCGTACATTACTATTCTACCTTGTTTG 1104470 24 100.0 42 ........................ TTTGTCTGTTTCGATTGGAATAATTTCAGCGTTACCATAAAC 1104536 24 100.0 39 ........................ TACCTGTATGACAATTCGCTAAAAATTTAAACTATCTAC 1104599 24 100.0 39 ........................ TCATTTCCATTTCTTTCAATTTATCAACTATTAACCTAA 1104662 24 100.0 42 ........................ GAGGAAAAGAAGGCTAACGCATTAAAGGCGTGGCATTTAGGG 1104728 24 100.0 39 ........................ GACCCATATTTAGGAGTTATGTCAGCTATATCCAAGCAT 1104791 24 100.0 41 ........................ TCTTGATTTCCATGTCTATCCCCTGCGCATATCTCATATCA 1104856 24 100.0 39 ........................ CATGAGCTGTCCCTCCGATAAGATCATATTTGATGCAGA 1104919 24 100.0 40 ........................ TGAAATAACCGCCGACATCCAACGCTGGAAATTTATATCT 1104983 24 100.0 40 ........................ AATCTTAAACCGCAACCTTTTATAAAATCTTCAACTGTAA 1105047 24 100.0 40 ........................ CCTATAACCTAATAGCATAATATTTACTATGTCCCTCCAT 1105111 24 100.0 39 ........................ TGCTCACCCTCTTCAGTTTCTGCGCCTTCTCCCTCACCG 1105174 24 100.0 40 ........................ TTGATATTTGAGTGCCTGCGCAAATTCCTCAAACAAATCT 1105238 24 100.0 40 ........................ TCTTTAGTCGCTATAATGTCGGGTAATGGTTGCTTACCAG 1105302 24 100.0 46 ........................ TCTGATTCTGATACCTCCTCTTCGCTCCCTTCTTGTTCACCTTCTT 1105372 24 100.0 39 ........................ CTTTTTTGCAACCTAGAAAGCCTTGTTGCGAAATATGGC 1105435 24 100.0 38 ........................ ATTGCTTCTACTTCTGCTGGCATTTTTTTCCACTAAAA 1105497 24 100.0 41 ........................ GCAATATTGGATAGGATTCATATCATCCAAGTTGCAATAAA 1105562 24 100.0 39 ........................ GCAATCATTGCGAAAATAACGGGGCATAAACGCCTGGAC 1105625 24 100.0 41 ........................ TAGGTAGAAGGCAGAAGGAAGTTTTAGCTTCGATATTGGAA 1105690 24 100.0 41 ........................ CGTTTCTCTAATCTCGCCAACCTAGTTGCGAAATATGGCTG 1105755 24 100.0 39 ........................ TATATTTCGTCGCTATATCGCCCAGAAGACGTCTGATAT 1105818 24 100.0 40 ........................ GTTCACGAGTAAAACTGTATAAGAGTGAGGTAACAAATCT 1105882 24 100.0 40 ........................ AAAGTGAAAGTGATGCTGGAGGTGAGGGACAGACTGGGAG 1105946 24 100.0 39 ........................ ATTTGGATCTTGAGAATTTTCTTTTCTTTGTCATAATAA 1106009 24 100.0 43 ........................ AAGGCGTATAACAAAACGGCGTATGTCATATGTTCTGCTTCTA 1106076 24 100.0 39 ........................ AGAGAGGGCTTCACTTACAAGTAAATCAGCACACCTTAT 1106139 24 100.0 40 ........................ GAGAAGTACCCGGGCGTATCCAGGCTAAGCCAGTTATCAA 1106203 24 100.0 40 ........................ TTTGCCATGGAAGAAGCGAAATGTCAGTGTTGGTAGCTCC 1106267 24 100.0 42 ........................ GAATAGTAAGTAAATCATCACCTGCAATTATCGTGTATTTTT 1106333 24 100.0 35 ........................ ATATAACGAAAGAGCGTTCACAAAAGCGTTAGTAG 1106392 24 100.0 37 ........................ ATTGCTATAAACCACATCATGGCTCCTAGCATCAACG 1106453 24 100.0 40 ........................ TACAATCTTATCAACTATGTCTTCCAAAAATGGTGGTAGA 1106517 24 100.0 41 ........................ CCAAAAATCGAATTCAAGGACCAAAACGTAAAACCACCTGG 1106582 24 100.0 38 ........................ TATGATGTTCTCATTGTATTTGTTGAGATCATGTTTAA 1106644 24 100.0 40 ........................ GACACGGCTTTGTAAACAGAGAACCCAGGCAGAACAGATA 1106708 24 100.0 40 ........................ ATACCGGTGTCCATACAGCCAATACCCCCAACACCGCCAC 1106772 24 100.0 42 ........................ TAATTATATAAGCCGAATTGATGTAAATAAGACAAGATGACT 1106838 24 100.0 39 ........................ CTTGTTTTTGTTCTTTTTCTTTGTAATCTTCTATTCTTA 1106901 24 100.0 39 ........................ TCATGAATCAGTTTGAAAGAAGAGAAGATTGGTTAAATG 1106964 24 100.0 39 ........................ GGTTTTGTCTCTTTTTCTGGCTTTCCCGCCAGAATCTTT 1107027 24 100.0 41 ........................ ATTTCGCAATTCATTTCGAATTGTTTCAATTCACTTCAAAT 1107092 24 100.0 41 ........................ CTTTCTTCTTCTATTCCTTATCTTTTCCTTCTTTTCACTAT 1107157 24 100.0 41 ........................ CTTATTTCAGAGGATCTAATAGACGAAGGCGGAATCTTTCT 1107222 24 100.0 41 ........................ CTGGCATTACCCAGGCTTGGCGACACACCAGAAGACAGACT 1107287 24 100.0 41 ........................ GTTTTTGTTGTTTCGAAGAGAATTGGCGGGGCGCTGTAATT 1107352 24 100.0 39 ........................ GTGGGAACAGCGGTGCTATTCATGACCCCTCGCCCAGGT 1107415 24 100.0 44 ........................ AGACTTTATTTCCAGATTTTTCTATATTTATCATTCCGTTTGAT 1107483 24 100.0 40 ........................ GAGCACTCTGGGGGATACCCCCCCGACCCCCTACTGCTAA 1107547 24 100.0 40 ........................ TGAGACCGGGACACCGCCGAAATTAAATCCGGCAACGCCA 1107611 24 100.0 40 ........................ TCTTCTTTGTCCATCTGTATATCCCAATCACGCCATCTGT 1107675 24 100.0 41 ........................ ACTACATATGACGCCGTGGATTGCAGATCTGCTATATTCTT 1107740 24 100.0 40 ........................ TCCTCTATCACGTCATCTATAGCCACACACTTTTGAGCGT 1107804 24 100.0 39 ........................ ATGGATAAAGACGAATTGAAAGAAATTATTAAGAATTTA 1107867 24 100.0 43 ........................ TACTTTTAATCCAGCTTGTCAATGGATGCAGAATTAGAGAGGC 1107934 24 100.0 39 ........................ CGTGGGGCTCGCTCTAACTTGTAACGACACATGTTCCTA 1107997 24 100.0 44 ........................ CCTGAGCTAAGGAGTGTCTTAATCTTATCGAAGTCGTCTGGCTT 1108065 24 100.0 43 ........................ CTTCGCCGTATAACGATCCTACAACAATAATCACTGATTTTGA 1108132 24 100.0 39 ........................ GTAATGAAAGTAATGTCTTTTCTCATACGAAAAGACCAA 1108195 24 100.0 41 ........................ AGATGATGCACTGGCAGAGGCGACAAGAGAAAAACCAGGCT 1108260 24 100.0 39 ........................ CAATGAATTCAGAAAACAGCTGTTCATCCTGGTTCTCAG 1108323 24 100.0 38 ........................ ACAAGGACGTTTTCGTGATCCAGGTGAGCGAATACACA 1108385 24 100.0 38 ........................ AGCAATAATTTAATTGCACTATTTTTAACTGTGCATGA 1108447 24 100.0 39 ........................ TTCACTGTCTACACATAAGTATAAGGGGCTTCGCCCCTT 1108510 24 100.0 41 ........................ CATAATTCGTTTCTGTATTTGGCGTCAAATTTATTTTTAAT 1108575 24 100.0 44 ........................ ATTTGAAATAAGACAAATCAGTGCAGAAGAGGCAAGGAAACTAG 1108643 24 100.0 42 ........................ AGATACCATTTTTTCTCTTGTTTAAACGTATCTACGAACCAG 1108709 24 100.0 41 ........................ ACCCCGCCAATCAGTGCGTTGATGTTCGCTGGCTTCATATC 1108774 24 100.0 42 ........................ TATATATTATATTATGAATTATACCACACACTTCTTTTTCGC 1108840 24 100.0 41 ........................ AGAAACGAATTGTTAGTTTACTTATCACGCCTTCATTCCCA 1108905 24 100.0 41 ........................ ATATCCACCCTTCTCACCAAAAGAATAATACAAAAATTTAA 1108970 24 100.0 43 ........................ TTGTCAACAGTTTCCGATAAGTCGTGAAGTTCATGTCATTTAA 1109037 24 100.0 51 ........................ ATTCTAGCTCGAATTCTGTATCTGAAATTTTACTTACTTTTTTGAACGACA 1109112 24 100.0 40 ........................ ATTATTACTACTATATCATCCGGATTCATTTTCTATCCCG 1109176 24 100.0 35 ........................ CTTATTTCTTCGCGGTTTATAATGGACCCGGAACG 1109235 24 100.0 41 ........................ TATCTTCCTGACGTAGATGATGCAGTCCAAACAATAGATAG 1109300 24 100.0 40 ........................ TGTACCAAGCCTGGATGGGTAGACCAGGACCGTGATCAAT 1109364 24 100.0 39 ........................ TCTTTCATTGGGTTCGTATAAAAATCCTTGACCTAAGGA 1109427 24 100.0 43 ........................ CAGACAATACGATCGAGTAGGGGACTGTGTGTAAAAATGAGGG 1109494 24 100.0 40 ........................ TGTACACTTCCTTCTTCTTAGGCAAGGTTATTTTAACCTT 1109558 24 100.0 39 ........................ GGCGGGTGAAAGAACTACTCGAGAAAGAGAAAAGAAAAA 1109621 24 100.0 41 ........................ AGTATCATTCAGTGGAAAGTTGTACGGTATGAGGAGTCATA 1109686 24 100.0 39 ........................ ATTCCACGATTTTAACCTTTACAGATTCCCCATATCCTG 1109749 24 100.0 40 ........................ CCTAGATCACGGGGCCAATCCAAACGTGAAAGATCTAGAT 1109813 24 100.0 41 ........................ TCAAAGGTTGCTGAGGACTGTTATAGGGATGCACTCTCAGT 1109878 24 100.0 39 ........................ TTGATCGTTAAAAAGTAACGTAAGACGTTTCACAAGAGA 1109941 24 100.0 40 ........................ ATATTGATTATGAAGACTTTAAGAAAGATACCAATTCTAT 1110005 24 100.0 41 ........................ TAATTCCTCTTTGATCTCTCTGGATTCTTGTTTTGTTGAAT 1110070 24 100.0 40 ........................ TTATTTCGAGTTTCTCATATATCTCCCACGTTATGTCAGA 1110134 24 100.0 39 ........................ CTCTCGTTAAGGAACTTACTCAAAGCCCTCAAAGACGAT 1110197 24 100.0 39 ........................ TTCAACTCCACGATTGATTTGATAATTATCAAGGCTTTT 1110260 24 100.0 43 ........................ AATGAGAGAGTCAGGCCGAGGCCCCTCATTACATCTATCATAT 1110327 24 100.0 39 ........................ ATAAACCAGCGTTTCCCTACAAGTATGAGGCAAAGAACA 1110390 24 100.0 43 ........................ AGGAATGAAGTGAGTTGTCCGGGTGGTACACCAGTCAAGTCAG 1110457 24 100.0 35 ........................ GCTTGTTGCTCAGCCATTGCGTAACCTCACCCCAC 1110516 24 100.0 38 ........................ TGGACACGTTGGGAAGGCCTTGCCACGCGGAACTCAGA 1110578 24 100.0 42 ........................ AGAGACTGGACCATAAAAGGAGTTCCTAAAGCGGGTAATAAA 1110644 24 100.0 38 ........................ TAAAGATTGACCTTATTACTCTTGACAAATATATCCCG 1110706 24 100.0 40 ........................ AACTTTGAAGTCAGAGTTTTCTGCTTCTTTTATTACTTTA 1110770 24 100.0 39 ........................ TACATTACCTTGATTATCCATTGTTGCGTTTAGCTGAAG 1110833 24 100.0 41 ........................ TATGATTTTCTCGCTATTCACCACCTCCTTGATATACTGTA 1110898 24 100.0 40 ........................ TCCATATAGAGATTTCTAATAATCAATTGGGGATAGATAT 1110962 24 100.0 37 ........................ ACGTTGAACCAACGTTACCCCCCGCCGTCAAAGACGC 1111023 24 100.0 38 ........................ TCCACGGAGGGGTGGAGAATGAAACTATTCGAAGGGAC 1111085 24 100.0 39 ........................ ATGAGATCTACCTCGAAAATACGAAGGCAGACGTTGAGG 1111148 24 100.0 39 ........................ GAAAATCTCAAAGACTTGTTAATCCCATCAAAAAAATGG 1111211 24 100.0 37 ........................ ATATCGTTATCCGCGGTCATTCTCACGTGAGTGATTG 1111272 24 100.0 40 ........................ ACGGTACGCCGTCGCCGACGCGGGGGATACCCTGTATCAG 1111336 24 100.0 38 ........................ AATAGTCTGCGTGGAAGTAAGTGACCTTCACGAACTTT 1111398 24 100.0 40 ........................ CGTGACCCCGCTCGTGCGGTCACGGCATGCTAGGAGGAGG 1111462 24 100.0 38 ........................ AAATTTTTAGAAGAAATATACGAATGTGTAGATAAAAA 1111524 24 100.0 41 ........................ TTTCTTTGTTCACGATCACTAACTCTAAGATATAATCGGGG 1111589 24 100.0 40 ........................ CAATAAAATCGTGATCAAAACGTTTTTGAATGAACTCATG 1111653 24 100.0 41 ........................ CTCATCAAGAGGCATTATTTTCTCATCAAAACCGCCAAGAT 1111718 24 100.0 43 ........................ AAAAATTATTCTTGTTGGATCTGTTGCTGCTATATTGGGTGTA 1111785 24 100.0 41 ........................ TTAGTAAGTCCCCTAGGGCATGATCCCAGAAATAACCACCA 1111850 24 100.0 43 ........................ GTAGATTATCAATCTTACCCAACGGTCCAAAGGAACTAAGTAT 1111917 24 100.0 40 ........................ TTTATCCTTAGGTATCTCATAGAGACTGGTTTAGCTTCGA 1111981 24 100.0 39 ........................ GCTATCAAAAGCTGGAGAGCAAGTAGCGACCTTTCTTTT 1112044 24 100.0 39 ........................ TAATCGGTTAAACCGCTTTTGAAAGGAAAATAGAATGAT 1112107 24 100.0 39 ........................ ATCCAAATCATTAGAATTAACGATAATTTCGGTAAGGAT 1112170 24 100.0 40 ........................ TACTGGAATCCGTATATAATTGATTCATTTAGTGGAACCA 1112234 24 100.0 41 ........................ AACTTCCTACTTAGACCGCGAATTAGCGATCTAGGAATCGA 1112299 24 95.8 38 .............G.......... AGTCTAACCCCCTTCTGTCCCTGATATTTTCCTCTATA 1112361 24 100.0 43 ........................ TTCTCAATTAGTCCACCCCAAGGTATCGTGAGAACCATAGTCG 1112428 24 100.0 37 ........................ AAAATTCGACGAGAAAATACAGAGAATCGCGAAGGCA 1112489 24 100.0 40 ........................ CTCCGCGAATTCTCTAAGTTTCGGAATAGCGTTGCCCTGA 1112553 24 95.8 43 ..........G............. ACAAGCCAAATGATGAAGTTACTACTACTAATACTACTACTAA 1112620 24 100.0 39 ........................ TTGCCATCGCCTCAACTACTGCCAGACCAAATGTCTCAC 1112683 24 100.0 41 ........................ TTCAGCTTAAGGATGACACTCTTGATATGTTGAGTCTTTCC 1112748 24 95.8 39 .......C................ GTAGGTGTGAAAATCACTATAGTCATCATACAGCCTCAT 1112811 24 100.0 39 ........................ TGCTTTGTACGTAAAATGACGTGCTTCTCCTTATACCAA 1112874 24 95.8 41 .............G.......... TGCACCAGTCCCTAGTGTAAACCCTTCCAATATTGACGTCT 1112939 24 95.8 42 .............G.......... CTTCATATCTTCAGCTTCAGGGTACCAGAGACGAATCTCACC 1113005 24 95.8 42 .............G.......... AGTAAAATAGGTCCTGCATTTGTACTAGGCGTTACGAATAAT 1113071 24 95.8 39 .............G.......... AGTATCGCAGCGGGCGGGGATGTCGCCGAAAAATCTACG 1113134 24 95.8 37 .............G.......... GTAATATCGGTCAATCCCACGAATGTGGACGTATACA 1113195 24 95.8 42 .............G.......... CGATGAACTGAAGGCAACGCCAAAACAACTGTTCAGGAAAAA 1113261 24 95.8 40 .............G.......... AGAGAGTCTAGGAGCAGGGATACAGAATGCTATAGGATCC 1113325 24 95.8 41 .............G.......... TATTGCGGACAAAGTTCAAAGTCATATATTTCTTTGCCCCC 1113390 24 100.0 40 ........................ ATTCACCCAGGGACGTTAATGCCGAATTCTATGAGGACAG 1113454 24 100.0 39 ........................ TTCTATAGTCAGGGGCATTTGGATTTACCTTAAGTTTGA 1113517 24 100.0 42 ........................ GAATATTGCAATTTCTGGATTATGAACACTGGAAAGTGATAG 1113583 24 100.0 38 ........................ TCGAAGTCCCTGTACCACCTCCACCCGTGCTAGTTCCT 1113645 24 100.0 37 ........................ CCCTGATCATCTTTAGCACTCATATGTTATCATGATA 1113706 24 100.0 39 ........................ ATCCAAGAACTCAATCAACTCCAGCGTATTTTCCCCAAA 1113769 24 100.0 40 ........................ ATCTTCCTCACCCTTATGTCCCAATGCCCCGAATTAGACC 1113833 24 100.0 39 ........................ GTAGCGTTTGAGGAACTAACCAATGCGACGATACAAGTA 1113896 24 100.0 40 ........................ GCACAATTGTTGTCGGTAAAGGAGAATGGAACAAACATAG 1113960 24 100.0 39 ........................ GCACCTCCGCCTCCCCCACCTCCACCTGCTCCGATTGCT 1114023 24 100.0 37 ........................ TAATTTTCTCGGTTACGGTACTGCCACTACTGGCAAT 1114084 24 100.0 40 ........................ TAAGGATGAACCTAATTGCTCAAGGAGAATAAGATCCTGC 1114148 24 100.0 40 ........................ GATAATGTAGCGTATATCCTCAAGCAGTTCTATAACAGAA 1114212 24 95.8 40 .............G.......... ATTATACTACTGTTATGTACTGTACTGTATATATTCCTTA 1114276 24 95.8 39 .............G.......... ATCTTTTCCACTGTATATTGACCATATCTTCTATCTAGA 1114339 24 95.8 42 .............G.......... TAAAGGAATGAGCTCTTGAATGACAAAACCCTTCGTTATACG 1114405 24 95.8 39 .............G.......... TCACTTTGCTCTTTATCGCATCTCCGACGTCGTTGAGAA 1114468 24 95.8 41 .............G.......... CCTTATGTAACTTGATCCATCTTCTGCACAACCTAGATCCT 1114533 24 95.8 43 .............G.......... CTCATGGTTCCCTGTCTCTCCTAGATGCATTAGACCAGACCCT 1114600 24 95.8 39 .............G.......... TATCATAAGAACATAGTAGAGAAGGCTCAGGATTACGCA 1114663 24 95.8 0 .............G.......... | ========== ====== ====== ====== ======================== =================================================== ================== 162 24 99.5 40 GTTAATCTTCTATAGAGTTGAAAG # Left flank : CGTCGTATTCCCCGTGAACTCCAACTAATGCATCGCCTCTACACAATTCTTCTACCCACTCCGGGGGAAACTTTGTCGTGAACTCCAACTAATGCATCGCTGCTACTTGACAATATGCTCGTGAGGTTCAAGATGATCATTAAGGCAGTGAACAGGAACCTCGAAATAAGAATTGCTCAGTAAAACTCGTTCTGTAGGACGCGGTTCACTCCTGGAATTTGTAACTTTATAACCACACTATTAAACGCAGCTAATTAATTGTGTAACTAAAAATTTATCTGAAAATCTTTTCCTGGGAGCCATCATGAAAATGCGTCGACGTTAAGATGATATTGGCAACGATGTGGATCATTGTTCATTATCTAAATCAAGAATACGTTAAGTTCCCAGTTGTTGAAGGGATTTCATGACTTGGGATAAAAATTGATGATCGTAAGAAGAGAAAAGTATATAAGTGTAAGAAATAAGATCATGTTAATCTAGCGGTATAAAGAGTGTCA # Right flank : GTCCTAGTATAGTACTTGAAACTAGGTGACCCTTAGATCGCTTAGTCTTATGTGGAGCTGATGCGTAATGATTGATTACGTAACGCTCTCCCTACGAATATTTCTAATTGACAAACTACACCATTTTTAAGTTCTTCACACTAATGGGACTGAAATCTCATAGACCCTATGCCTGACCTTCCCTAACATGACCTTGATCAATCTTGGAAGAGACTGAAAGAACCCCTTTAAGGGCCTAGGTTCACTCCTCTGTTCCTTTAGAATTGAGAAATACAGTACCACCTTTACCAAGTCTAGCAGATCTCGATTTCATGACTCTAAACTTGATTGGGAAAAAGTTAAGGATGGGGAAAATTTGCTGCTAGCACCTGATTTTCTCTCTATGGTCCAGTGTTGCCCTAGGTTAATGGGGGGTAAATGTGTCCTAGAGTTTTCCTCACGCAGTACGGTGTGAAATTCATGTACAGCAACCAGTCAATTACTGATCCTTAAGGGGATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTTCTATAGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 1136622-1136108 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012174.1 Metallosphaera sedula strain ARS120-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================== ================== 1136621 28 92.9 39 .............AT............. TGCCTCCAGAGGTGGGAAGCGTACGCAGAATAGCCCTTC 1136554 28 100.0 37 ............................ AATAGTTGCCCTTCAGGAGACGCCACTAGTTGAATGC 1136489 28 100.0 42 ............................ AAGTACCTCAGAGTTCCGTTCGGTGACATGGCTATGATGTGT 1136419 28 100.0 40 ............................ TTGGTTTTTATGGTCTCAGCTACTCTTAGTGTGTAGAGGT 1136351 28 100.0 39 ............................ ACGTGCAATCAAGTATTGGTTCAGTCGTAACAGGGGAGT 1136284 28 100.0 41 ............................ TCTTCAATTTCTCCGAAATCTTCATCACAATGGACCCCAGT 1136215 28 89.3 52 .......C......G............T GGGATCCCCGCTTCCCACACTCACGACCGGGGGGGGGGTGTAGACGTGTCGT 1136135 28 96.4 0 .......C.................... | ========== ====== ====== ====== ============================ ==================================================== ================== 8 28 97.3 42 TTGTAGAGATCCTTCGAGGGTTTGAAAC # Left flank : CCCTCGAGGAGTACGCTTCCGATCTGCTTCACCTCGAGGAGGAGCTCAAGGCAGATCAGTCAAAGGCCTGGGAGAGATATCTGGGAGGCCTGCTACTGTTCTCATGTCTCATAGACTCAGACAAGCATAGCGCCAGTGACACATCCTTTCTTCCCCAGAATCCCCCTTCACCCTCACTGATTACCGAGTTCATATCCTCGATCAAGAGTAACGATAGGATGGCTGGGATCAGGGAGAAGCTCAACTCCCTTGTCTCGTCTACTCCGGTTAGCCGGACGGTAACCTTGATTGCCCCGAGCGGATCGGGGAAGACGCTGTCCGGCGTTCTAACTGCACTCAAGATGGGGAAGTCGAGGTTGATCTATGCTCTTCCCTACATTAGTATTGTTGAGCAGGTTCACGACGTGCTCTCAAGGACGAGGATGGACCCGCTCAAGTTCTATCATCTATACTAGGGTAAGGTTTTTTAGGGCTGGCTATCAATAACAAATAAGAGCGGT # Right flank : ATGCTTTTAGTTAAACTAGAGAATGGGCTCAGGTGATGAATTACCTGGGCCGACCCATCAAGGGTAGCTTTAGAAGCTGAGCCTAGATCCCTATTTAACTCCTCTTCCTACCAAAATAAGCTTACTAGTTTTCCCTGTGCTCGGTTTTCCCAGTTATGTTCACTTCCTAGCGAACTAGTTTCTAGCATTCTTTAGAGATTAATAAAGCAAAGTTAAAACAATAATATCTCGAAGTCTATCAATAAGTCTGTAGTGATCCTCAAGGTTTAAAACCCTAGAGAGATTAATAGGATAACTAGTCATTGGAGAGCCTGGCATCAAGGCTTATTTTTTGGAAGTCTAAATAGGTGATGGGGCCCCCGGTCTAACTCTCTGCCAACAGCTGCCGGGCCCGGGAAAACTCTTGATTAGGCCCCCGCTTATACGGACCCTCCAGCGTTTTGAAACTATCACATTTTGTTATGCGTCCTTTGCTTCCTTGTCCGTAGATCCTCCCGAGG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTAGAGATCCTTCGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 1137840-1139327 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012174.1 Metallosphaera sedula strain ARS120-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================================================= ================== 1137840 28 96.4 39 ......A..................... AAATAGTACTGACTTGATACGGCTAGGTGATAATAGCGT 1137907 28 96.4 39 ......A..................... GCAAAGGCCTTTCCCACACTCTCCAAGGGAGTATGAAGT 1137974 28 92.9 39 ..A...A..................... CTTACGTCTTGAAAGTACTCGATTATCAATTTAACAGGT 1138041 28 96.4 41 ......A..................... GCGTCAATTCTCTAAAAAGAAAAGGCTAGCGTGAAGGGGAC 1138110 28 100.0 41 ............................ TAAGTGAACCATGGGTATTCCCCCTCCGGGGGAACTTCGAC 1138179 28 100.0 39 ............................ TCGGAAAGAACATATACATCCTCCCCGTGGTTCCCGGGT 1138246 28 100.0 39 ............................ GTGTTTGTCCCCATCTTTTGATGGGGCAGCTGCTCCTCT 1138313 28 96.4 39 ......A..................... TATACTTTGGAAAATCAGTATATCTCTTGTATCTTCTGT 1138380 28 100.0 40 ............................ TCGATAGCGAACCTGATAACTTCGCTTCTATTCAGTCTGT 1138448 28 100.0 40 ............................ ATAGACGTATCGACCCGCCGTATAGCATCAAGAAGATAGT 1138516 28 100.0 43 ............................ TACACGACGCGATCACACTCACATGCCCGCGTGTCGCCGTTGT 1138587 28 100.0 39 ............................ ATAACTCTATACGCTCTCACACGGCTGAGGTCGAGGAGC 1138654 28 100.0 41 ............................ CCACCTTCACCCTCGCCTTACGGCCCTTTTCCTTCCTCAGT 1138723 28 92.9 218 ......A....................T ACAACCCCCTATGTCAAGCACCGTGTCCATTTCAACCTTTAACCTCTTATTTTCCTGGAATAAACGGAACTAGGTGACTGAGCAAGAGAAAGGAATGATAATGCTTATTTTGGTAGAGACGAATTTCGTGAGGGGGCCTTAGACTGAGTCTCCTCAATGATGGGTCGGGACAGGGTCAAGTCATCACCGGACCCCCGCTTTTCAATTTTGACTCTCGT 1138969 28 78.6 38 ....G.A......C.A.A...C...... TGGGGTTTGGTCGAATTAGTCCCATATGGTAGTTTCAG 1139035 28 78.6 237 .....AA...G.C.........CA.... TCGGATCTTCTCCCTACATGACGTATTCCTGTGACCTTTTCAATCCACCTCACCTCCAATTTGCTGGAATATAGGGAACTAGGGGGACTGAGCATGAGATAGGAATGGTGTCAAACTTATTACGTAAAGGAGGTGATAAAGGGTGGAGGGCCTAAGCTCATAACAAGTCCGATATGGCTCCATGTGTCAGCCGTTCATCATAGGCCCTCTCTCTAATTCTGTCTCTTTCATTATTGT 1139300 28 82.1 0 ..A.G.A....A.....C.......... | ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================================================= ================== 17 28 94.7 63 TTGTAGTGATCCTTTGAGGGTTTGAAAC # Left flank : AGTTCTAGGGAAGATAGTGCCCTCTTGGCGACGTAATATGCGATGAGGGAAGATATCTCAGCGTGACTGGATCGCGGATCCTTACCTCCACGAAGATGTTTCTGAAAGAAGGTCGTGTACTTACCAACGTCGTGGTATGCCCCAGCAATATAGGCTGGGTCGGAGAGCTCCGGACGACTCCCTGAGATGAGCGAAGATGCAGTGGTTCCTACCTCATTAAGGTGGTCCGCGAGGCGCTTGTTGGGATGAGAACATAGATCGTCCGGTGAACATTCCATGGGAAGAGTTAGGGTTAAGGTTAAAAAAGATTATTTTATAGCAGTAATAATTTTCCTATTGAAAAATCGGCAGTGAAAGGGAAGAAGAAAATATATAGAGATAACAATATTATTTTGTACGTGGGTTCACCTCGGCGGTGAAAGGGAAGTTGAGGGTGGTTGATCACTGCCGAATTTGGGGTAAGGTTTTTTAGGGCTGGTTACTAGTAGTAATAATAGCGT # Right flank : CTCGGATCTTGTCTCCATGTGGCATAGGCCAATTACCATTTTAATCTTCAACCCCTCATTTTACTAAGGAAATGGAACTAGAGGGTTGAGCTGAAGAAAGGAGTAGCGTCAAACTCATTGCGTTAAGGAAAGATGAGAAACAGCCCCAGTTCGTAACAAGTTAGTCATGGATCCGTGCCTCGGTGTCCATCACTCTCAGTCTGTCTCTAAAGATCTTGAGGCCTGAAACTAGGACGAATTCCCGAACATTATGTAGGCTATTTGTATTAACTCTCTTCACTCTTCATATGAAGTAACCTTTACCTGGCCTTCAGGTGGAGACTCAAGATTCCGACATATCCCCTCAACAATACCCCTAGTGTAGTCGGCATCTAAGCCTCTGACTTAACCCAGGTAAGAACGGCCACTCTCTCAACTTTGAGACAGTCACAAAAAGGTTTATTTTGTTGCGGGTACCAGCAATTTGCGGGTACCAGCAAATGTTCGTGTACGGAGTTCCC # Questionable array : NO Score: 3.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-2.38, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTAGTGATCCTTTGAGGGTTTGAAAC # Alternate repeat : TTGTAGAGATCCTTTGAGGGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //