Array 1 227933-235233 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSTT01000004.1 Ruminococcus sp. OM06-36AC OM06-36AC.Scaf4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 227933 28 100.0 33 ............................ TAACAGCTGCTTGCATTTTGGGGCTTTTTTAGA 227994 28 100.0 33 ............................ CGGCAGGCGGCGAAAATCGTGCTTATTTCATGC 228055 28 100.0 33 ............................ TTCTTCCCGATCTTTTGGGGAAAAGTCGTGTAA 228116 28 100.0 33 ............................ TATCTGGGCAGATGATGCTGATCTGTCCGGTGG 228177 28 100.0 33 ............................ CTTGGTGCCGCGGTTGGTGGCGAAAAAAACTGA 228238 28 100.0 33 ............................ TTTGTGAACGGAAAATTTATTTTTGACTTGTAC 228299 28 100.0 33 ............................ TCCGCAAAAAACGGCAGCGGAACCCAAGTAAAA 228360 28 100.0 34 ............................ TTGTACAAACATCAAGAAGCAGCGTTGCAAGATA 228422 28 100.0 33 ............................ TCCGATCATAGACTGGACAGATCAGGAGATTTA 228483 28 100.0 33 ............................ GTCGTTCCTTCACCGCCAACGCCGGAAATGACA 228544 28 100.0 33 ............................ CTGTGCGGTCTTGTCCAGACCGTCCCAGTCAGG 228605 28 100.0 34 ............................ GGCAGGCATATCGTGACCGGTGTCCGGTGGGCTG 228667 28 100.0 33 ............................ CTTCAAAGAAGTAAAGTAAAGTAAAGCAAAGTA 228728 28 100.0 33 ............................ CAATAGAAATTATTTCCAGACGACCGCCCGCGA 228789 28 100.0 33 ............................ CTGTACCCGCCGAAGAAGAACAGGCAATAGGCA 228850 28 100.0 33 ............................ TATAGGGTGTCTATCATGCTATAATATGTGTAG 228911 28 100.0 33 ............................ TTTGATTGAAGCTATGAGCCCGCATAACCGAAC 228972 28 100.0 33 ............................ CATGAAGCAGATGTGCAATTTCTTTGGCATTCC 229033 28 100.0 33 ............................ CATTTGTAATTTGACAAGCCAAACTTTTTGGAA 229094 28 100.0 33 ............................ TATCACGGAGGAATAAAGAAGATGAAAAAGTAC 229155 28 100.0 33 ............................ TCCGATGCTGTCACTTCTTCCGCGTCCGTGACA 229216 28 100.0 33 ............................ TATTGGTTGGTCAAAAACCACTTTGAGTGAAGA 229277 28 100.0 33 ............................ TATCTTCGGCCAGGTCTTCCAGCTGCTCATTGA 229338 28 100.0 33 ............................ TGAATCCACTATCATTTTGCAGCTGACTGGTTT 229399 28 100.0 33 ............................ CAGAAGGAGAGTGAACACCAAAGAAGTCTTTGA 229460 28 100.0 34 ............................ TATGTTATGTTGAAAGTTTGGGAACAGCTCTATG 229522 28 100.0 33 ............................ TACATACGTAAAATTTCATTTTGAAGATAAAGA 229583 28 100.0 33 ............................ TAACAATGAGGCTGAGAATGAAGAAGCCTCTGA 229644 28 100.0 33 ............................ CAAAGGGCGCGTATGGCTGGTGCACTACCAATA 229705 28 100.0 34 ............................ TAATAAGCACGTAATCGACAACGAGAAGCTAAAA 229767 28 100.0 33 ............................ TGTTCAGAAGCTTGCAGAAGAGCATCTCATGGA 229828 28 100.0 33 ............................ TAAGCTGCTTCGCAGCTGGCATTGCGTAAACAG 229889 28 100.0 33 ............................ TCAAGCAAGTAACTGTCAATGCGGTAAAACGGG 229950 28 100.0 33 ............................ CATCCTGCCACCACAAGAAATCATGGTAAATAT 230011 28 100.0 33 ............................ CTGTAGCTTAAACTTGTCGTCCGCTGTCCCCGC 230072 28 100.0 33 ............................ TTATACCTATTCCACAGATGCCATGGAGTATAC 230133 28 100.0 33 ............................ TCATACATGGGAAATGACATCCGGGAAACGTCC 230194 28 100.0 33 ............................ TAAGCCGCCTTACGGATACGACCGGAAAAAGCT 230255 28 100.0 33 ............................ TACATATGGTGTTTTAGGAGTATACACAAGGAG 230316 28 100.0 33 ............................ TGATGAATTGGATCTGCTGAAATACGCCTGTAA 230377 28 100.0 33 ............................ CAGCAAGCACGATTGTACTATCTTTGCCACCAC 230438 28 100.0 33 ............................ TTGTACGGTATTCGCGGGTTTCATCTGCCAACC 230499 28 100.0 33 ............................ CGGATTTTTTCTCACCTACCTTCTATTGTAAAT 230560 28 100.0 33 ............................ CGGATTTTGCTGAATGCCTATATCGCATGTATC 230621 28 100.0 35 ............................ CATCAAAAGCGTGTTTACTGGAATCGGTGAAAAAG 230684 28 100.0 33 ............................ TATCATGCCGGCATCACACAAAATGCACCAACA 230745 28 100.0 34 ............................ TATTATACCGAATTCATCTTGACGAAAAATATTG 230807 28 100.0 33 ............................ TATGGTATCGATTACAATATTTCGTTGCTCGAC 230868 28 100.0 33 ............................ TGGTCAGCGTATGGAGCTTCTTTTTCGGGAGCA 230929 28 100.0 33 ............................ TGCCTGGACGGTGGAAACGACCGGACATACACG 230990 28 100.0 33 ............................ CGAAACTACAAGCGTTTTACAAGTCCCGACGGT 231051 28 100.0 33 ............................ GTAGCTGCTTTGCATACTTTTTCGCTTCATCAC 231112 28 100.0 33 ............................ TGGTATCAAATTCCAGTTTCAACAGTTCCGGAC 231173 28 100.0 33 ............................ CAACAAGCTTAGACTGCATAATGCTTTTATACT 231234 28 100.0 33 ............................ TTAGCAGTTCTGCACCTGTGATAGACCGCTTGC 231295 28 100.0 33 ............................ TTATTAACGTCTTTCTGAAAAATTTCCGTGATA 231356 28 100.0 33 ............................ CAGAAATTACACAATCCAAAATCACAGACGAAC 231417 28 100.0 33 ............................ TACGCATGTAGTTTTTTCGTCACAATTCGAAAA 231478 28 100.0 33 ............................ CACAGCTTTGATAGATCCCCAGATTGCTTCGAA 231539 28 100.0 33 ............................ GTAGGTTTTTGCCTGTTGCTTGCTTGTCAATCT 231600 28 100.0 33 ............................ TTAAAAACTCACCTCTATGGTATAATAGCCATA 231661 28 100.0 33 ............................ TCGGTGCACATTTGTATACTTGCACAAAACGAA 231722 28 100.0 33 ............................ CAACAAATATGGTGTATCTGTATGAATCGGGGC 231783 28 100.0 34 ............................ CTTGGGAAAATGGCGATTCAGGTGAACCGAGAAA 231845 28 100.0 33 ............................ TCTATGTCATTTTTTGAATCCGGTAGAACTGGC 231906 28 100.0 33 ............................ CAGATGTTTCACGAGTGTCCACCACGAATTTGG 231967 28 100.0 33 ............................ TCTATGTCATTTTTTGAATCCGGTAGAACTGGC 232028 28 100.0 33 ............................ CGGATAATTTTGGAAAAATCCTTTTCGGATACC 232089 28 100.0 33 ............................ CATCGCCACACCCCCTGTACATCAACCCTGTGC 232150 28 100.0 33 ............................ CGCCAAAGGTTACAGGAAAAGGTCAGGTGTATT 232211 28 100.0 33 ............................ CGCCGTTGTACTTCTGCATCGTTGGTATCAAAA 232272 28 100.0 33 ............................ CTGTCCCGCAAGTGCAAGCGGGGGATCCGTGAA 232333 28 100.0 33 ............................ TATTACGCATTCAGCTCCATTCGTCCCATTTAG 232394 28 100.0 33 ............................ TGGAAATGCATCGTTTTCAGATGGATATATTTG 232455 28 100.0 34 ............................ TCCTTTCGCGTGTGCAGTATAGGTAGGGTGAGTG 232517 28 100.0 33 ............................ CGCCCCTCTGACAGACCCAGATATGTGATACAG 232578 28 100.0 33 ............................ CGCACAGCGGCATCAGAACGCCGTCCGCGAAGC 232639 28 100.0 33 ............................ TACTGCTCATGAAGCAGCAGTGACGAGGAGGAA 232700 28 100.0 33 ............................ TAGATACTCCGGCGACCGGTGTTGATATATCGG 232761 28 100.0 33 ............................ TCAAAAATCATAACGTTGGTTGACGGAACGGGC 232822 28 100.0 33 ............................ TGTTGGACGTTTGAAGCGTTGCATGCGTCAATT 232883 28 100.0 33 ............................ TGTAATAGGGGTTGTCCTTGTAACCATCTAACA 232944 28 100.0 33 ............................ GCGGTATTTTATCCATGAGATGATCTTCTGCAA 233005 28 100.0 34 ............................ TATGACGAATACCGGAGAATATTATGGGCATAAA 233067 28 100.0 33 ............................ CTCACCTCTACGGTTATTATACCATAGAGGTGA 233128 28 100.0 33 ............................ GCACAGTTCCGGATCACGGAGGGAGAGCACAAG 233189 28 100.0 33 ............................ CGCATTACGGACAGCCCAGAGGGGATCCTGATC 233250 28 100.0 33 ............................ TCAGCCGTGCCGGCTGGCGGCAATTACTTTCCG 233311 28 100.0 35 ............................ TCTCCCTCTCCTGATCGATGCCGCCATTCAGATCA 233374 28 100.0 33 ............................ CGCTTTAGCGAAGAAAATGGGTGCCGAAACAGC 233435 28 100.0 34 ............................ TTTGCAGACAGCCGTTGGCGTACATGGTATAGGT 233497 28 100.0 33 ............................ TAAAATGGAGTACGCCCTGACCAAGGGGCATTT 233558 28 100.0 33 ............................ TCGAAAGCGTAGAGGACACCAGAGAGGACACCG 233619 28 100.0 33 ............................ TGATCGACGAAGAAACAAGACGGCAGTTTGAGG 233680 28 100.0 33 ............................ CAGCAGGCGGAAGAAATTGCAAAAAACGAGCTG 233741 28 100.0 33 ............................ CAACTTGCCTATGGCTAAAAGGATTGCCAAGGC 233802 28 100.0 33 ............................ TATCGACGGATACAGCATGACAGAAGACACGAC 233863 28 100.0 33 ............................ CACAAAATGGCTTCTACCATGGATTATACCACA 233924 28 100.0 33 ............................ CACCCGTTGCATGATTTTTTTTGCTTTGCAAAA 233985 28 100.0 33 ............................ TCCTGTGTACACCAAAAAATAAAAAAAGTGTTG 234046 28 100.0 33 ............................ TGAAACAGCTTGTGAAAGCTGGAACGGATCACC 234107 28 100.0 33 ............................ CGATTCGATCAATGCGGTTTAGTACCACGTCAG 234168 28 100.0 33 ............................ TGTCTTGAAATGTCTGCGGTGGAAGATCGAAAA 234229 28 100.0 33 ............................ TGATTTCGAAAATATCACATCATTTCGGAGTTA 234290 28 100.0 33 ............................ CGATCTGAAAGCGGTTGACACCACGATCCGGAA 234351 28 100.0 33 ............................ CGCACAGACGAAAAGGAAGCTGAATGATCGAAA 234412 28 100.0 33 ............................ TTATACCTATTCCACAGATGCCATGGAGTATAC 234473 28 100.0 33 ............................ TGAAAAAGAAAATCATATCCATTTTGCTGGCAG 234534 28 100.0 33 ............................ ACAATATTCCACGTATCAAAGACAAGTCCGGTG 234595 28 100.0 33 ............................ CGGCAAAAAGCGGGGCAGACACGTTTTCGATTT 234656 28 100.0 33 ............................ CATGCAGCACTTGATGTCATTACAAAAGACGGC 234717 28 100.0 33 ............................ CCACTGTGCGATACCGTCATTTCACCTGACTTG 234778 28 100.0 33 ............................ ATGGCCAGAAAAAAGACCTGACGGCCTACGAAA 234839 28 100.0 34 ............................ TATGAATTTGTGGACGGCGACGAAATCACGATCA 234901 28 100.0 33 ............................ CTGACCGCTTCCACATGTCCGCGACTGGCGGAC 234962 28 100.0 33 ............................ TGACAATGGCGGAGATTAGAAAAGAAGTAAAAG 235023 28 100.0 33 ............................ CGATCACGTCGCTTTCCTGCATGTAGTTCGACC 235084 28 100.0 33 ............................ CGATTATATCATTGTGGATAAGTGTGCGGGCTG 235145 28 100.0 33 ............................ TCTGCATTTGCTCCCGCTGTTCAAACAAAGTTC 235206 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 120 28 100.0 33 CTTTTCCCCGCATAGGCGGGGGTGATCC # Left flank : GAAAAAGATGAAATTCTGGAACTTGGAGCAATACGGGTTCGGAATGGAAAGTGTGTGGACGAATATCAGCAGCTGATACTGGTTCATAATGAAATTCCTGAAACGATCACTGCATTGACGGGAATTGAAAATGCATCTGTCAAAGCAAATGGAATCCCTATTCAAGATGCCTTAGCTGCATTTTATGATTTTATAGGAAGCAGTATGGTGTTGGGGTATTGTATTGATTTTGATAAAAAATTTCTCGAAACTGAAAGCCAAAGAAATGGCATGGATTTTCCAGAAATGGATACCTATGATGTAATGCAGGCTGCAAAAAGCAAAATAAAGGGGTTGAGAAGTTATAAACTCGAAACAATAGCAAACGTATTGGAAATTCCGGCAAAGCAGGAGCATCGTGCACTGGCAGACTGTCAGCTTTTGTATCAGGTGTATTGCAAACTAAATGAAAATGAAGCAGGCTGATGGAAAAAGTAACGCTGTTTTGGGATCTTTTTAGT # Right flank : CGATTATATCATTGTGGATAAGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26-1700 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSTT01000016.1 Ruminococcus sp. OM06-36AC OM06-36AC.Scaf16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 26 28 100.0 33 ............................ AGGACGGAGCGACAGGTTCAGCAGCAAAGGCAG 87 28 100.0 34 ............................ TAAATCCGGCGATTACTGGCGGGAAGCTGCTGGC 149 28 100.0 33 ............................ TGAATTTTTGCAACTTCTACGCATGCCAGATAC 210 28 100.0 33 ............................ CGGCGTTCTGACGGACTTAAAACTTTTCACAAA 271 28 100.0 33 ............................ GTACAAGCTTATAATTTGTACATGTTGTTATAA 332 28 100.0 33 ............................ GTACAAGCTTATAATTTGTACATGTTGTTATAA 393 28 100.0 33 ............................ TCTCCGCCCACATACGACACATCGTAGTAGTGC 454 28 100.0 33 ............................ TCATGGCGATCGGCAGTATCTGCGTGGCGTTGA 515 28 100.0 33 ............................ TTACACGCAGGAGCAGATCAAAAAGCTGAACGA 576 28 100.0 33 ............................ TGTGATTTAGACCGTTGAAAAGCGACGTATCGC 637 28 100.0 33 ............................ TAACGTTAATCTTTTTCATAGTAAATTCCTCCA 698 28 100.0 33 ............................ TACAAGACAGCACGTTCTGCACAAAGTTCAATC 759 28 100.0 33 ............................ CGATGTGGATCCCCTCAGCTTTTGCGAATTCCG 820 28 100.0 33 ............................ TACGTGCTTGTGTACAAGCTTGACCGATTCGCC 881 28 100.0 33 ............................ CAAAAAAGTTTGCCGCATCGGGATTCGAAACAC 942 28 100.0 33 ............................ TGTTTTCCACATACGAAATTGACAACGATTTGA 1003 28 100.0 33 ............................ TGCGGAACCCGCTGAACAGCTGGGATAAGTCAG 1064 28 100.0 33 ............................ CTCAGGACTTTGCGACCACCCGGGGAAACCGCC 1125 28 100.0 33 ............................ CGAGATCAGCTGGTGCACGAACCGGGCGAACGC 1186 28 100.0 33 ............................ TCTGCATCATCGCAAACCAGTGCATCACCGCAA 1247 28 100.0 33 ............................ CCAAGCAGCCGATTTGGTGTAACATTCAGTTCT 1308 28 100.0 33 ............................ TGGTATGAAGAAATTTTGAACGACGTGGAGGAC 1369 28 96.4 33 ......T..................... TGCAGTGGAAGATCACATTCCGGCTGATTCCTC 1430 28 100.0 33 ............................ CGCGGCACCGCATAGCTGCCGGAAAAGCTATGC G [1452] 1492 28 100.0 33 ............................ CTTACGCTCAATCTGATACTGCTTGCCGCATAT 1553 28 100.0 33 ............................ TGAATGCAGCACACAGTATATCTGGCATAGTAT 1614 28 100.0 33 ............................ TCCAAAACGGATCTCTTTGATTTTTTTGAAATC 1675 26 92.9 0 .....................--..... | ========== ====== ====== ====== ============================ ================================== ================== 28 28 99.6 33 CTTTTCCCCGCATAGGCGGGGGTGATCC # Left flank : GTTCCGCGGATTTTACGGTGTTTCCC # Right flank : CCATCTTTAAATCCTGATTTCAGAGAATTTGTACGGATTGCTGAAAGCAAGAAAATCATGTATAAATTTTACAACATTCCTCGTGATAAAAACAATATTTTTGAAGGATTCACTTCCCGTTGCTTGAAAAGGAATGCCGTGTAAAAAAAGTAAAGGCAACGCCACACAGAACTTGTGCGGTGTTGCCTTTATGTGATTTATGAGTGTTTTGACAAATGTACGAATTTTTCAAACAAGCACCAGGAGGAAAATCACTGTCTGTGTATTTTTTCCTGGTGTGCTCTGATTTATTTGCTTGCAGTCAGCGGATCAGCAGGCTTCGAAGCATCGCCAAGTCGATACCGTTCAGAATGCCATTACCGTCCAAATCGCCAAGTCGTCCATTGTTGATAGATCCGGATTGGATAAGCCATTTTTGAAGCATTACCAGATCTGCAGCGGTCAGTTTTCCATCTGTATTTACATCGCCTGCAACACCTACTGTGATAACTGCTTTATCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //