Array 1 50232-52502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNCT010000015.1 Anaerotruncus rubiinfantis strain D41t1_190614_H2 NODE_15_length_66398_cov_28.7807, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 50232 33 100.0 34 ................................. GCTGTATCCTACACTCTCTCCATATCCGTCGCCT 50299 33 100.0 34 ................................. ACCCTCCTGTTAGTTGCGGGACAGCAGACGGCCA 50366 33 100.0 35 ................................. CTGAAAGGAAAACGGGATATAGATCATGACTGTAC 50434 33 100.0 35 ................................. AGTTATTACAGTCCTGCCGATGGCCGATTTTGTGA 50502 33 100.0 33 ................................. CCAGGTCTTTGAGCGCCTGGTTTTTCCATCCGG 50568 33 100.0 35 ................................. TTGACATGCTCCATGCTCATAGCAAAGAGCTTGTT 50636 33 100.0 34 ................................. CGCTTTGGTGTAGCAGTCGTCAACCAGCACCTTT 50703 33 100.0 36 ................................. CGCAAAGATATCCGCAACACTCTTTCCCGTGTCCTG 50772 33 100.0 36 ................................. CCGCCAGCGTGTTGATGATCCGGTTATTTGCCGTTA 50841 33 100.0 33 ................................. TTTACAAATATGAGGACTATATGCGCGCTACAG 50907 33 100.0 33 ................................. TGAAAACCTATGGCGATATGGTAGACGATGCGA 50973 33 100.0 35 ................................. ATCTATTTTGAGCTGCGACCGGAAGAATTTTATAA 51041 33 100.0 35 ................................. TCATAGACCCGGCGACGCTTTACCCCATCTATCGC 51109 33 100.0 36 ................................. CTGATACCCAATTTCACCGGACACTGGTTAAGGCAT 51178 33 100.0 34 ................................. ACTTTGCCGTCGTCTATGTACATTAATGCTCCGT 51245 33 100.0 36 ................................. CGTTATCGTTGATGACGTTAATCCATCCCGAATCCA 51314 33 100.0 35 ................................. CATAATATCACCCGGCTGGCACTCCAGTACACGGC 51382 33 100.0 36 ................................. ATCACGTAGTGCACCATACGCACATTACAGTCAAAC 51451 33 100.0 35 ................................. GGACATGCCTATTCCCGACTTTCAGCGCATTAAAA 51519 33 100.0 34 ................................. TTCGCCTGATGATACCATACAGGATTCGGAAATG 51586 33 100.0 36 ................................. CAATGCCGTCACCTGCTGTTCCGCCTCTGTATGCAG 51655 33 100.0 34 ................................. TGCTATTTATTATACACGGTTTATGGGGCTTTGG 51722 33 100.0 33 ................................. TATGCGTACTTGTAATATTAGTTTTTATGGGAA 51788 33 100.0 35 ................................. CTACACCCATAAACTAGCGTCTACCTATTCCGCCA 51856 33 100.0 36 ................................. ATCAAGATGATTGAGCGTCTTTACGCGAAAGACCCC 51925 33 100.0 35 ................................. AAATCTTTGTGGTTCTCCCGCATCCAAGTATTGTC 51993 33 100.0 35 ................................. CGTCTGTCCTGACTTCCCGGCAGCCCGAGAGATTG 52061 33 100.0 34 ................................. AAAAAGCATCAGACAATCAACAAACCAACGCCTG 52128 33 100.0 34 ................................. CACAATCTCGAACGCGCTGACCGGCTGCGGGTCT 52195 33 100.0 34 ................................. CAGTATGCAACTGATTTGATCGACGTGCCGCTCG 52262 33 100.0 36 ................................. TTTACCGGATGAAGATGGCGGTTCTGGCGATGGCTC 52331 33 100.0 33 ................................. ACCGTAGTGGAGAAGTATATATTTTCCCTTCTG 52397 33 100.0 35 ................................. AATTTTTCCTCATACCATTTGATCGCTTCACTGGT 52465 33 90.9 0 ...................T.C.....C..... | ACC,G,C [52491,52495,52498] ========== ====== ====== ====== ================================= ==================================== ================== 34 33 99.7 35 GTCGCGCTCCATGCGGAGCGCGTGGATAGAAAT # Left flank : GCTTATCCGCCGTTTTTATGGAAATGAGGGGATAAAATGCTGGTCTTAATCACTTATGATGTCAATACAGCCGATACCGCCGGACGCAAACGGCTCCGGCAGGTCGCTAAGCAATGCGTCAACTACGGGCAGCGTGTGCAGAACTCCGTATTCGAATGTTTGCTTGATCCCGCGCAATATCGTTTACTTCAGTCCCGATTAGTAGCTATCATAGACAAGGAAAAGGACAGTCTGCGTTTCTACCAACTGGGAAACCAATATCAGGACAAAATCGAACATTTCGGTTCAAAATTCACCTACGAACCAGAGGGCCTGCTAATGGTGTAGTGGTGCGAATAGCAAGCTGTCACCATACCCTCGATAGGTTCGCACCGTTTTTCTCTTTCAGATCCCTGTCGATTTGTCATAACTGCCGTCTCGTATCCGATTATGGATATGATTTTCTTTTGTTTTTTAGATGTATGTCCCAAAAAAATTTTCTTAATTTATACAACTTTGCT # Right flank : TGCAGTTTTATGCGTGTATTTATTTTAATACCAAAATGCACACCCCTTGGACTTTTCGCCTAAAGGGTGTGCATCTTTTGATTGTCCCTCGTAAACTGTAGCAATTTTGTTTTGGATGGTATTCCAACGATATTTTTACAATAGATAGTTCCCTGCGAACAGGTAATATCCGCTATCCACCAAAAGCATGACCGCAACGAGGATAAGAACTCCATAAAACAAATATGCGAAAACTTTCCCGTTCCTTTGCTTGAACTTTTCAACAAAATGAACCAGTTTTTCGAGCAGATTCATCTCGTTGGCGACATAAACGATCACAGCCATAAATTGGCTAACCAAAAACCACAGGGACAAAAGCGCCGCTGCCAAAAGCAAGCTCCCGGATTCACCGCCTATTAGAATCACAGCATAAAAAGTAGGGTCAGTAAAGCACGTCAGAGCAAATATAAACCCTGTAGCAATATATTTCAGCCAACTCCCATTGATGGATTGCTTTTCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCCATGCGGAGCGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 236523-236884 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNCT010000003.1 Anaerotruncus rubiinfantis strain D41t1_190614_H2 NODE_3_length_241286_cov_30.1971, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================================= ================== 236523 33 90.9 30 .....A.......T..................C GTTGTCGCTTATAAGGTTTGGGCACCACGG 236586 33 100.0 35 ................................. CGCTTCGACATGCTCGAACGGTGCTCTCGGATCAG 236654 33 100.0 35 ................................. CGCGATCATAGAGGGACTATGGACGGTTATTTCTG 236722 33 100.0 97 ................................. ATTGCTTCTTATATCAGCGAAAAAATCAACGAAGATCCGGATCTGATGCCGCCGACCGGGATGATGATGCAATATAGGTTATGATGTACCGTTTTTT 236852 33 90.9 0 .....A.......T.............C..... | ========== ====== ====== ====== ================================= ================================================================================================= ================== 5 33 96.4 50 GTCGCGCTCCATGCGGAGCGCGTGGATAGAAAT # Left flank : TTTAAGTTGTCAAAAGAGGCAACGAAAGAAGAAGTGGAGCAGGCCGTAAAAATTATTGAGGCTCTCCGCAAGTAGGAGGGCCGGAATTTGCAGGAATTCTATATGCGTCAGGTTAAGCTCCCACCCCACGTGGAGGCTACAGTTCTGCCGAATGATGACGGAACATTTGATATTTATGTAAACTCTGAGCTGCCAGAGGAAAAGCAACGGGAGGCCTTTGATCATGAAGTTAGACACATTAAGCTGGATCATCTTTATAACTACGATCCTGTCGTTATCAATGAATTGGAGGCTGATGAACAAATTACTGTCTCTCCAATACAGAATGTAAATTCTGTTGATCTAAAACAAAAATTAACTACAGCGAGGCCCCAAAATTCAAAACGTAAGAAAAAGATGCCTACACCCCAATACCCCACCAGTCCAGATGAGCTATGGGAACACAATCAAAAGATGTTGCTGCGATGGGAAGAAAAGTGGCTATATGACGTAGGGTAATT # Right flank : TATCGAAAAACGAAAAAGAAACAGATTGAGGTGATCGCATGCGAATGGGCGCCGCGTATATCCGTGTCTCAACGGATCAGCAGATGGAGCTGTCGCCGGAGAGCCAGCGGGGCGAAATCGAGAAATACGCAAAGGCCAACGATATTGTTCTTTCAGAGGAGTTCATTTTCGAAGAGGACGAAGGCCGCAGCGGTCGTAAATCTGCCAACCGCCCGGAGTTTCAACGCATGATCGGCATGGCGAAAGCGCAGCCGAAGCCCTTCGACGTGATCCTTGTCTGGAAGTATTCCCGCTTCGCCCGCAATCAGGAAGAAAGCATCGTCTACAAATCGATGCTTCGAAGCAAATGCGGGATTGACATCATCAGTGTTTCAGAGCCGTTGGTCGACGGGCCGTTTGGCAGTTTGATCGAGCGTATCATCGAATGGATGGACGAATACTATTCGATCCGCCTATCTGGTGAAGTAGTCCGCGGCATGACCGAAAAGGCGCAAAGGGGA # Questionable array : NO Score: 4.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-1.62, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCCATGCGGAGCGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //