Array 1 93449-90948 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIM01000002.1 Natrialba hulunbeirensis JCM 10989 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 93448 37 100.0 36 ..................................... GTGTTGGCTACATCCCCAAAGACGTGGATTTGTTGC 93375 37 100.0 38 ..................................... ATAAGCTAAAGCCGGTCTTTTGGGCACGTTTCTGGTAC 93300 37 100.0 36 ..................................... GTTGTCTGCGCGTCCTCGATCAGCATCACAGCAGTG 93227 37 100.0 36 ..................................... AGCGTCTCGTAGTGGTTGATCTTGTGGATTCCGTAG 93154 37 100.0 37 ..................................... TCTGCTCCGAACAGTGCCGAAGCGGTGTCAATGTACC 93080 37 100.0 35 ..................................... GCATAATCCACGTCCGTTTCGACCAGAACCCTATC 93008 37 100.0 37 ..................................... GAGGCGGTCGACTACGCGGCACTCGTGCAGGGGTTCC 92934 37 100.0 34 ..................................... CACTGACTGCTGACGCAAGCGGGTCAACGGCGAT 92863 37 100.0 35 ..................................... GAGTGTCTCAGAACCTCCGTTGAAGCGAACGACGT 92791 37 100.0 33 ..................................... AGTCCGATGAGCAGTAGGCGAGTCGCGGAGCTT 92721 37 100.0 35 ..................................... AATCGACTGACGACCACCCTTCTTCGTAATTTTTC 92649 37 100.0 34 ..................................... AACTCGAGTCCCAGCGCGAACGGTGGTCGCGATG 92578 37 100.0 33 ..................................... GCGCTTCGGTCGGGCACGTTCACGATCACGCAA 92508 37 100.0 39 ..................................... AGCTGGAGAATCACTCCGCGGACATGGACGATCTCGGCG 92432 37 100.0 35 ..................................... ACTATTATCTACACGACGGAGATCCACAGGATCGA 92360 37 100.0 35 ..................................... ACGTTTGTAAAGTACTCGTCGATCCCGTCGCTATG 92288 37 100.0 37 ..................................... GTCACTTCGTCCCCGTCGCGGATAATCGTCGCGTCGA 92214 37 100.0 36 ..................................... GTCCACGTCGGCTACTATTCGACCGACAAGTACGAC 92141 37 100.0 36 ..................................... TCGACCGCCTACACGAGCCGTGTTCTCCCTCGAATC 92068 37 100.0 33 ..................................... ACGTTGTCAGCTGGCTTGAGTCCAACCGCTACC 91998 37 100.0 37 ..................................... ACGGTCCGGATGTCAGGGGATGGTTCGGAGCCGAGTA 91924 37 100.0 34 ..................................... GATCCCAGTAACTGCGTTCGACGACTGTGCACTT 91853 37 97.3 32 .......................A............. GTATTCCGGTTCGCGCAAGGAGACTACCGAAT 91784 37 97.3 33 .......................A............. TCACTGCTCCGATTGCCTTCATGGGAAACCGGG 91714 37 97.3 36 .......................A............. CCGGCAAGACTACCACCGCAATCAACCTTGCAGGGG 91641 37 97.3 36 .......................A............. GACGTATTCGAGGACGCCTTAGACGAGACGGACCCT 91568 37 97.3 34 .......................A............. GGATCTCCCGGATGCCGACACTGGCGGCAGCGAA 91497 37 97.3 34 .......................A............. GAAGTGACCGTTCTCCGTGACAAGGAATGCGCCG 91426 37 97.3 37 .......................A............. GCGCTTGATCCAACGTCGTTGCGAAACGCGTAGGCGG 91352 37 97.3 38 .......................A............. TGCGTCGATGTTCTCTGGCGGTTCGTGCTCGCAGGCAT 91277 37 97.3 38 .......................A............. GTCGTGCCATTTGATCGCTCCCTGCTGATCTGGATACT 91202 37 97.3 38 .......................A............. GACGTCGCGGCGGTCCTCCAGGTGGGCGCGCAGTTCGT 91127 37 97.3 33 .......................A............. AGGATGGCGAGGTCGAAACAGTCGGTTATCTCG 91057 37 97.3 36 .......................A............. AAGAATCGTAGCGTGAGCGTCGCGTCGTCGACAATC 90984 37 97.3 0 .......................A............. | ========== ====== ====== ====== ===================================== ======================================= ================== 35 37 99.0 36 GTCGCAGTAGGGAGAAAACCCAGCACGGGATTGAAAC # Left flank : CGCGATCGTCTCGCTCGGCGGCGGTCCGCGGGACGTGCTACTTCCGTTGACAGTCGCAGCACTCGTCTTGTCACAAACGGTCGACAACGCGTTGTTTTTCAGTGACATAGATAATACGGTCCAGGAGTGGCCACTACCCGATCTAACTACAGGGATTCCGAGTCGAACGACAGATACATTCGAAGCCATTGTCACGGCTGGCGACTGGCTTTCACTGTCTACGATTGCGGACGAAACAGCTCAGTCGAAGAGCACCGTTATTCGGCACGTGAATGACCTCGAGGACGCAGGTCTCGTCGAGTCAGATACGAGTGAGAAGGCCAAACGAATTCGCATTGCCTTCTCTGGAGAGCTACTATCGCTGGCTCGAGCTAGCAGTCCCTGACCCGCCTTTCATGGACCTTTTTAAAGATGCTGTACAGCCCCCTTTCATGAATTGAGGCGCAACTCTCATGGCTGGAGAAACAATTATTTGCCTGCTCCCGCTATCTCAACCCCCT # Right flank : ATCAGCGTCGAGAGCGCCTCCGTGAACGCCCTAAAGGGTCGCAGTAGGGAGAAAACGGCTTTGTTGAATCGCTGTAAGTCGGTGGACTTCACTGTTTGATGCCGCTTTTGATGTTATAGACGACACACATCAGATCGATTTTACGGAATTCATGATACCAGCTACGTGCTCGCACGGCGTAGCCGAGCGAGTGCTCGACAGCAGAGTTGACTGTTTCAGCCATTGATATTTGAGCGTACGATCTTCATCAATACGGGCGTTGTATGCATGATTATACGAGGCGAAGGTCCGGTGTTTGATCAGCGGCCGAATGTCGAGTTTCCAAAGTAATACTATGAACTGTCGAGAATATAATTCATATCTATGTCGGACCCACAGGGATTATTGGGAGGCGGAATACGCATCAGTCGTTGTAAACAGGAGTTCTCCAGTTTTTGTCTCACAGCTCACGACGCTTCTCCGCAAGCCGCTCCGGGATTTCGTCGATATTGTCGAGCGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTAGGGAGAAAACCCAGCACGGGATTGAAAC # Alternate repeat : GTCGCAGTAGGGAGAAAACCCAGAACGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 5639-6409 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIM01000003.1 Natrialba hulunbeirensis JCM 10989 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 5639 37 100.0 38 ..................................... CTGTGTTGTTGTCGGTACTCATGGTGTACTGAAAACTG 5714 37 100.0 37 ..................................... AGTGAGTATGAGTGAAACGGGCTCAATCTACATCGGG 5788 37 100.0 36 ..................................... TGTGATAAAGAACGGCTCTAGTTCGTCGTCGAAAAC 5861 37 100.0 36 ..................................... GTCTCCGTCGTTGCATCCAGAACGGTCGCAATCCCG 5934 37 100.0 38 ..................................... TCGATCACCGGTCCGATTGGCCTAGCGGCGACCTACGT 6009 37 100.0 37 ..................................... AGCTCGTCTCGGTCAACAGCCGACTCGAACTCGGGAA 6083 37 100.0 34 ..................................... TCTGCGACCAGCGGCCGGCCAGGGCGTGCGCTTG 6154 37 100.0 34 ..................................... ACCTCGAGCAGGCGATCGAGCGCGACCGGCCGCT 6225 37 100.0 37 ..................................... TGACGAATATATGTGCAGTACATGGCGAAGTGGACAC 6299 37 100.0 37 ..................................... ATTACGTCGACGCTTTCGCCTCGGTCCATGTAGCCGG 6373 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 100.0 36 GTCGCAACGGACAGAAAACCCAGCACGGGATTGAAAC # Left flank : GCGACGGAAGGCCATCCGGCAACAATCGATCCTCCTCCGGAAGGCAATTACAGGGGAGATGGACGAGTATCACGCACTTACGTTCGACAGATAACAATGCGTCTCGCAATCACCTACGACGTTAGCAACGACTCGAACCGGCGACGAGTGTATCGGACGCTCGAGCGCTACGGTGCTTGGAAGCAGTACAGCGTATTCGAACTGGAGATTTCGAAGACCGATCGCGTCGAGTTAGAAGACGAACTTGAATCACACATTGAGCCGTCCGACGGTGACCGAATTCGGATCTACCGACTTTGTGAATCGTGTGTTGGCGCGATTGAGGACCTTGGTGATTCACAGCCTGATGAGCAGTCGAACGTCATTTGATTTGTTTGGTTCTGTATGGCAGTTTCATCGACCTTTATAAATCGTGTGTACAGCAGTAGTCGACGAACATAGTCGCGGAATTCAGGGCACAAGAAACGTTTATTAGCTCTATAGCCGTATATCGACCCCCT # Right flank : CGGGTCGGCGGCCTCGTGGTGCTCCTGCAGCCACTCACGTCGCAACGGACAAAACACAGATTTGTATAGCGATACGAACTTTACTAAAACAGAAGCAGCAACAATTCTGATGGTATAGCTCTTGAAACACTCAGTTACGAGCGATACTGTTTACGTCTAATCACACTACACATTAGACCAATAATGTGCGGTGGATTTACTAGGGGCCGCGCCGTCTGGTAAGCCGAGTCGATGGAACACAGCAATTCGGGGCCTACACCCCAGGGAAAACCACTCGAGGACGCCCTCGCGGAGTTCCTCGAGAGCAAGTCCGGCAACTACGCGACGAACCTAGAGCGCGTCGTCGGCCAGTGGATCACTTACTGTGCCGACCGGGACGTGCGGACACTCGAGTCCGTCACGAAACGCACGATGGGACACTACGCCAGCCACCTCGACCGGCGCGTCGACGCGGGACAGTCCGACGCCGTCGACGGCGGGATAGCAGCATCGACGGCGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGGACAGAAAACCCAGCACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : NA // Array 1 88280-86621 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIM01000026.1 Natrialba hulunbeirensis JCM 10989 contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================= ================== 88279 30 100.0 71 .............................. NATTGAAGGTCGACGAAAATAGATTTGTAGGAGTGGTACATAGTAGGCTTTACGTCCGGATTTCCGGCATG 88178 30 100.0 36 .............................. AATATAATTCTTCTTTTTGTATACAGTTCTATTTCG 88112 30 100.0 35 .............................. CGTGTTGAGGGGGCTGCTGGCGAAGAGGGCGAGCC 88047 30 83.3 0 .......................NG.TTT. - Deletion [88018] 88017 25 83.3 35 -----......................... CGTGTTGAGGGGGCTGCTGGCGAAGAGGGCGAGCC 87957 30 100.0 33 .............................. CTCGCAGCCCGTGGCTGGGCAGGGAAACTCGTT 87894 30 100.0 35 .............................. CAGAGCAGGCGATGACCCTTGAGGACACGATCGAC 87829 30 100.0 33 .............................. CTGATCATCGGGCGGGTCGGGGGGGACTGACCG 87766 30 100.0 35 .............................. GGTAGCTCGGGGACGTAGCTGAGCCAGTCCGATTT 87701 30 100.0 36 .............................. TATCGCGAGTTTGCTGCGCCGGACATCCAGACACTC 87635 30 100.0 38 .............................. CATCGGTCGGAGTTGCCACACGTCGGGCATTCGTCCGG 87567 30 100.0 36 .............................. ATCAGCTACTGAACGGCTGATGAATTCCACACCGGA 87501 30 100.0 35 .............................. GCCAAGCACGGCGAGCAGGTGGCCGCCGCCGACGG 87436 30 100.0 34 .............................. GCCTGCCAGCACGTCCTCATCCCAGCGCTGGCGG 87372 30 100.0 36 .............................. ATACGTCGTTCACCAGGGCTCCGAACTCGAGTCGCT 87306 30 100.0 33 .............................. CTCCTTGGCGCGTTCGCGGGCTTTCTCCCGCTC 87243 30 100.0 36 .............................. CGCGTAGAGTTCGCCAGGTCGCCGACGTCGCCGCCC 87177 30 100.0 36 .............................. GCGCGTGACGTAGCGGTAGATGTTCTTCGCGAGCGG 87111 30 100.0 37 .............................. TCTATGACCACCGATCGGTAGCGTTCGGCAAGCGCCT 87044 30 100.0 36 .............................. TCTATTCTGCACGCACCGCACGGGGCGAGCCGTCGG 86978 30 100.0 36 .............................. ATCTACGCCGTGACGTGACGACAACCCGAACTAAAT 86912 30 100.0 35 .............................. CTGTTCGTCTCGCGTTTCCGGGCCGGCGACCGCTT 86847 30 100.0 35 .............................. CGAGTCTGATGCTGTCTCTGATGCTCGTGATGCTG 86782 30 100.0 36 .............................. GCCCCTCTCCATGTACTCACGAGTCCCACGGTACGC 86716 30 100.0 36 .............................. AGCACGTACAGCGACGTGACCTCCTGGACGTCGCGA 86650 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================================================= ================== 26 30 98.7 35 GTTTCAGACGAACCTTTGTAGGGTTGAAGC # Left flank : CGAACAGTTGACCATCCAAATTTGAAACGAAAAGTCAGCTACCAGTATCTGATGCGACTCGAGGCGTACAAACTCAAGAAACATCTCCTGACCGGTGAGAAGTACGAGCCGTTCAAACGGTGGTGGTAACATGTACGTTGTCATGGTTTACGACCTTCAGGCTGATCGCACACACAAAGCTCTCAAGATCGGTCGTCGGTATCTCACTCACGTTCAAAACTCTGTTCTTGAGGGTGAGATCTCGAAGGGCGATCTCGAACAGCTCCGTGGTGAAGTAGAAGAGTTACTCGAGCCCGGCGAGTCTACGATTATCTACGAGCTCTCGTCAGACGCACTTCTCGATCGAACGGTGTACGGCGAAGATCCAACAGAGGATCAGCGCTTTCTCTAATTCTGGAGTGTTCCGTCGACCCCCACGGGAATGACGACTATTGAAGGTCGACGAAAATAGATTTGTAGGAGTGGTACATAGTAGGCTTTACGTCCGGATTTCCGGCATG # Right flank : CCTCGACGTCGATGACTGCGAGAGCGCCCTTGTGGACCACTCGCGAGAGCGCGTGGTCAACGACCTTCACAGGTCCGGGAACGGTCATCTCCAGTTCACCCACGGTGACCGTACCGGGAGCGACGGGCGTCGTTTCGACGTTCCGCGCGGGTTCGCTCAGGAGATCACCGTCACGGTAGAGTCGGCTGAAGACGTTCCCGATCGGGTGCACGGCGCTGTGGAGGTTCGGACCACCGTTGGCAAAGTACAGGCGAACCGTCTCGCCGACTTCGGCGTGCATTGGCCCCTGCGTTCCATCCTCGGTGATTCCGTACGCTTCCCCGTTGAAGATGACGTACGTTGGGTCTTCCGCGGCCCCAGCGTCGTAATCGTACGAGTGGTGGCCTTCTTCACCGGTGTCGCCGTCGGTGTAGAGTTCGTGTTGGCCGAGGTAGAGCTCGCGGTCGACCTCGGGAAGCCCGTCCGTGGGTTCGACGAGGATGGCTCCGAACATCCCCGCA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCTTTGTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 115173-110063 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIM01000026.1 Natrialba hulunbeirensis JCM 10989 contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 115172 30 100.0 35 .............................. CTCGTCGCCGGCGAGTTAGACGACGGCACGCCGGT 115107 30 100.0 36 .............................. CTCGCAATCGTGTTCGCGATCGACCTCGAATAGACT 115041 30 100.0 36 .............................. GTCCGCAGAATCGGGCGACGTGCCCCAGGAACAGCA 114975 30 100.0 35 .............................. GACATCGAAGTCGTCGTCGACCAGATCCGGGATGT 114910 30 100.0 36 .............................. TCAGTGTTGCATCCAACCAACTCTCAGGTGGAACTC 114844 30 100.0 35 .............................. CGGGAGACGAAACGGACGTGGATGGCCGCCGGATC 114779 30 100.0 36 .............................. CACGGTCAGTCACCCCCGGTCGCCCGGCCGATGATC 114713 30 100.0 36 .............................. GGTCGACACGTTGCCGAAGAAGTCGTCTCCTAGCAA 114647 30 100.0 37 .............................. TGCCATTGACTACGCTGCTGTCGGCTTCCGTGTTGAG 114580 30 100.0 35 .............................. GGCGAGTTGACGATGGCCGGCGAGACGCTAACGAC 114515 30 100.0 36 .............................. CGTGCTCGCACAGAAGGCGTTCACTGCCCGAGCTGT 114449 30 100.0 36 .............................. AACCGACGGCGCTGGCAAGTGGTCGCCCGCACACTC 114383 30 100.0 38 .............................. GCCACGAGGCAGACCGGACGGAGTACTCCGCCAAAACG 114315 30 100.0 36 .............................. TGTTGTCGTGGCTCTGCCTTAAAACTAGGCGCGCTG 114249 30 100.0 35 .............................. GTAGTCGGCGTTGCCAAAGTCTATCGTTTGCTCGG 114184 30 100.0 33 .............................. GATATCGTCGGCACCGACCCACTCGAAGGGCGA 114121 30 100.0 35 .............................. CGGGTGCCGGGCCGATGTTCCCAAAGTACGCGATT 114056 30 100.0 38 .............................. TTCTGCGAGCCCTCTTTCATCTTGGCCGCCGCCCAGAG 113988 30 100.0 34 .............................. AGGTAATGCGTGCCGTCGCCCTCGGGCTGCACAG 113924 30 100.0 35 .............................. GTCGGGTCCCGACCGAACGCTATCCCAGTTGACGA 113859 30 100.0 38 .............................. AGTATCCGTTCGTACCCAGTCGTATGGCGTCGTTACCG 113791 30 100.0 36 .............................. TCGTGATTCCGGCGGCGGCGGTGCTTGCCGTGTTGA 113725 30 100.0 35 .............................. GAGAACGACCTCCAGGCCGGCAAACTGGAAGTCGA 113660 30 100.0 34 .............................. GGAGGGAACGCGGACCAATGACAAACGAACACGA 113596 30 100.0 36 .............................. GTACTGGGAACAGCATGATTATCAAATCCGGTGGAT 113530 30 100.0 36 .............................. GAGCAGCGGGAGGAACTCATCCTCGACGCGCTGCTC 113464 30 100.0 35 .............................. GCAAACGCATGGAACGATACGGTATCGAGCGCGAG 113399 30 100.0 45 .............................. TCCTCGACGACGCGGTCGACCAGTTTCGACTCGCCGTTTCAGACG 113324 30 100.0 36 .............................. CAAGGCGCGCGCGTACTATACTATAGGTATCTACTG 113258 30 100.0 36 .............................. CGTTGATTGTAATCTCAGGTTCTCGAGAGTCCGATA 113192 30 100.0 38 .............................. TTGGTGTTCGTTCATTGCTCAGTCCTCACAGGTCGCTC 113124 30 100.0 36 .............................. TCGAGTCGCGTCGTCGAGATCAGCGACCTCGAGATC 113058 30 100.0 37 .............................. TCAATCATTCTTGAGTTGTCCCGCGTATGGCTGCCGG 112991 30 100.0 34 .............................. ACCGAACTCACGGTATGCGCCCATCACGTCGTCG 112927 30 100.0 34 .............................. TGTTGCTGGCTGACTAACCATGTCAGCACACACC 112863 30 100.0 36 .............................. CGTTCGTACACTCGAGTACGCACTCTGGGGACTCGT 112797 30 100.0 35 .............................. GGCCGCCCGCTCCGCGAGGTCCGCGAGTAACTCGT 112732 30 100.0 36 .............................. CAGACGCTCGTCCGGGATACTGAAACTCGGGTTTGG 112666 30 100.0 35 .............................. GCGAGAACCACATCGCCCAGGCCGCCGGCCGATAC 112601 30 100.0 37 .............................. GAAGTCACCCGCTGGGGCATCATCGGCTTCGATGACG 112534 30 100.0 36 .............................. GTACTGGACGGTACCGTCGAGCGGAGCACCCTCGTA 112468 30 100.0 36 .............................. CTCGAGTCCATCGTCACTCTGAGCAGGGGGTGCAGC 112402 30 100.0 35 .............................. GCATCGCCCAGGCGTTCGACGATGCCGAGGCTCGC 112337 30 100.0 36 .............................. CCGAATCTCGTACACTGTCTGCATTAGTAACCACCC 112271 30 100.0 35 .............................. TCGAGTTGCCAATCGGGGGTCGCATCGAGATCCTG 112206 30 100.0 38 .............................. TCGTTCTCACCCTCACGAACGCTAAGAACCAGACCGTG 112138 30 100.0 37 .............................. ACTTCTCTGAACTCAGCAGACGCGATCGCCGGCTCAG 112071 30 100.0 37 .............................. GCACCTCGACGAGTCGGATTACGAGGAGGGGGGCGAC 112004 30 100.0 36 .............................. GCCCGATCAACAACTGGCGGTTAGTGGTGACCGGGA 111938 30 100.0 36 .............................. CGCTTTCCTCGCTTCGAAGGACGATTCCCGCGCCGA 111872 30 100.0 36 .............................. CGTTGTCCACGTCACAAGGAATTCATTGCCCGGCTC 111806 30 100.0 36 .............................. ATACGCTCGTCCTCGTCGCTCTGGTACTGCACGTAC 111740 30 100.0 36 .............................. AGTTTGAGTTTGCCTGAGTTAGAGCCAGTTGACTTT 111674 30 100.0 33 .............................. CGTTCTCTGCCGTTGCCTCCGGGTTGCTGTCCA 111611 30 100.0 38 .............................. AGTACAACACACGGCATCAGCTGGTCCTGATCAACACT 111543 30 100.0 34 .............................. CGTTTTTGTTCGCGGTGCGTGCGTCGTGTGATTC 111479 30 100.0 36 .............................. ATGCGCTACTGTTCACAGGCCGGCGACGACTGTCAC 111413 30 100.0 36 .............................. TTTATGAGTTGCATCTGTGGGGTCTGTCCCACCTGA 111347 30 100.0 36 .............................. GAAATTGACGTGAACCCGCGCGCCTATACTGGCACG 111281 30 100.0 36 .............................. GAAATTCGAATGCTCACCGGGCAGGAAACGATGGTT 111215 30 100.0 35 .............................. GATCGACTCGTGGTCGGGTGCGTCTACCAGCACGA 111150 30 100.0 36 .............................. GTCTAACTTGTCTTCGCCGACCGCGCCCGCGAAATG 111084 30 100.0 35 .............................. CCACCGAACAGGGCTGGGCATCGTGCATCAGTCTG 111019 30 100.0 37 .............................. GACGATGGGACTGTTAGTAAGATAGACACATCGGATG 110952 30 100.0 38 .............................. CACTCGTCGGTGAACGTGATCGCGAGCTCGCCGTCGCG 110884 30 100.0 38 .............................. TCGGGATATGTCGGCCGACCCGCCGCCGGACTGTTCGG 110816 30 100.0 36 .............................. GACAAACGCATCCGGATCAACCGGAGTATCATTATC 110750 30 100.0 38 .............................. CGGCAGTGCTCCATGTGAGGTCGTTGTCTTCGATCACG 110682 30 100.0 35 .............................. AAAAAGGGACTCAACGGCGAAGCACACCCCTGGCA 110617 30 100.0 37 .............................. GAGCGTGTCGACCGGTTGGCGATCGCCGTTGTGCCAG 110550 30 100.0 35 .............................. AGGAGGGCGGCCGCTACCCCGACGCAGGATACTAC 110485 30 100.0 35 .............................. CGGGCTTTCACCCATCCGGCACTCGTCGCGCTCGT 110420 30 100.0 34 .............................. GTTCAGCGCGTCCTCGGCCCACTCGAGACTCGTC 110356 30 100.0 36 .............................. GCCCTCTTGACGCGTTTGAACTCCTCAGCGTTGGGC 110290 30 93.3 37 ..............C.............T. TGGTGGTTTGACGTGACGCTGCCCTGGAGAGGGCTCG 110223 30 100.0 35 .............................. CGGCACAATATCCTTGACGAGTCTAAAGACGGCGC 110158 30 100.0 36 .............................. GATCAGTTCGGCAAAGCCGACCAGGGGGATCGCGAG 110092 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 78 30 99.9 36 GTTTCAGACGAACCTTTGTAGGGTTGAAGC # Left flank : CGAGCGTGCCCGCCGCGGGTCGGGACTCGGAACGGATACAGTGGACCACCCGAACCGCGTTCCCGTGACGGTCGGACTCGAGGGCAGCGGGCCGGATCATCTTGCGGGTGTGCTTGATGCGATTGCGGAACTCGACACCGTCGATGTACTTTCTTCGTTGCCGGAAGAGTGATTGGTCTCTCTCCCGTTCAGGTGTGCTTTTGGTTTCACTTTGCGCGCTCGAACGGTCGTTTGACGGTTGACTATTGGGACTTGTCCGCCGGCGTCGCCTCAATTAGACTGTCTGACTTGACTCTTTGTTGTGGGTTGCTCTTTGATCCTCCTGGTCTCGTTCCTCTTATCGTCTCAGTCTGTCTGTACGATGTGGGAACTCGCCTACGGGCACCATTCGTGGTGTGGTTTTCCATCGACCCCTGGGGGGAACACGTGTATTAGGGGTCGATGGAAATTACTTTGTGTGAACGGTCGAATGAGTGACTCATAGCCGGATTTCCGGCATG # Right flank : ATCACACTCTTGCGTTATAGGCGAGAAGGTCCTTCACGATTCACGTGTTCTTACGTCCCAACACGAGCATTCGGCAAAATCGAAGCTGAACTCGATCTCTCGTACAGAACGGTAAGACAGCGCGTCGAGCGCTTTGCCAGAGCGCTCAACGCGCCTTCGCTCACGCTATCTGGTCCGGTCGAAATCGACGAAGTATACGTCTCAACGGATGAAAGGCCGCGAGCGAGACCATAGTAGTTCACAGAAGAACTGGGTATTTGGAGCGACGTGTTCGGGGAGAGAAGATAGCTCCCTGCGGCTCATCAGTTCAGTACACCCAGAAGTTTGCTGGAGCACTAACGGGTGTCGCCGTCCGCTCTCACTCCCACGGTTCATCAAATTCCGCCGCGTAGCACTCGCTGAGCTGGTCTGCGAGCAACATTCCAAACCAACTCTACGACCTGCTCATTCCTCAAGTTGCGCTAACTAGACGGTGCCCCGACGAACGTATTATCAACTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCTTTGTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //