Array 1 40684-42737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVRZ01000045.1 Moraxella catarrhalis strain 157.rep1_MCAT 288_109735_5659892_137_,...,89+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40684 28 100.0 32 ............................ GTGCAGCTTGGGGCAGTGAATCAGCAGAGGCA 40744 28 100.0 32 ............................ AAAGCCATCTTGACCAATCACTGCGTACGCCC 40804 28 100.0 33 ............................ ATGTAAAACCCAAAAACATAAACTCATTTCTAA 40865 28 100.0 32 ............................ TGTGGGCGATTATTAGCAAAAATTGGAAACTT 40925 28 100.0 32 ............................ AAAGCCTATAAGCCCAACGCCACCGTCATTTA 40985 28 100.0 32 ............................ TTTTGCCTGATGCGTGTTTTTTGCAATAAGCC 41045 28 100.0 33 ............................ GCGGTCGTGAAGGCCTGGACAGACTGGGTATCT 41106 28 96.4 32 ...............A............ TGCCACTGTGTACACAGCGTGGCAAGGGTATC 41166 28 100.0 32 ............................ ACCCCAAAATACATCTACACCGATGATAACAA 41226 28 100.0 32 ............................ ACGCTGTAAAGCGTTTAATGTTTTGAGCGTCA 41286 28 100.0 32 ............................ TAACAAATCATCAAGACCACCACCGTCTCCGC 41346 28 100.0 32 ............................ AAGAACTAAACGCCCAAGCATTTGACGAAAAA 41406 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATACCCTT 41466 28 100.0 33 ............................ AACATTCCATTCAAATTCAGCAGTGTAGACATT 41527 28 100.0 32 ............................ ACAGGCACTATGGGATTGACATTTGGTTTATT 41587 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 41647 28 100.0 32 ............................ TAAGAAAAAGCCCCTGTGTCAAACAGGGGTTT 41707 28 100.0 32 ............................ ATCTATCCATTTCCGCAATCCCAAACTGGGGA 41767 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 41827 28 100.0 32 ............................ TACAAAATGACAGCTATCCCATCCGCTCATAC 41887 28 100.0 32 ............................ GCCGTGCCCCCATTGATGCCTTTTTTGTCTGT 41947 28 100.0 32 ............................ ATCTTTGTTTTTTGTGATGTTGCAAATCTCTG 42007 28 100.0 32 ............................ AAACGGTGGGGTCTCATACTTCATCAATCCGT 42067 28 100.0 32 ............................ GCACTTTCAATGCTTGGTATCTTGCTGTTAAC 42127 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 42187 28 100.0 32 ............................ CAAGTGAGTTTGATAGAAGCTTTAAATCTTCT 42247 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 42307 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTGTCCAGGC 42367 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 42427 28 100.0 15 ............................ ATCGGATTAAAAGCT Deletion [42470] 42470 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 42530 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 42590 28 100.0 32 ............................ ATTACAAGGTTTTAAATAATCATTTAACGCTG 42650 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 42710 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.7 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAATATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //