Array 1 7905-6858 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSVX01000004.1 Actinobacillus pleuropneumoniae strain 597 contig_chr00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7904 28 100.0 32 ............................ GAATTAAGCACAGAAGCACCTACGAACGACTT 7844 28 100.0 32 ............................ GATTGACAGCGACTGGAAACCAGCAGGCGCAA 7784 28 100.0 32 ............................ TGTTTTAGCTGCTCAGCAATCGTCTTTTTCAT 7724 28 100.0 32 ............................ AGACTTCTCAAGTAAAATGACTTTTTCAGCAA 7664 28 100.0 32 ............................ TTTGAGAAAAAGGAGAAAATGAAATCTCAAGC 7604 28 100.0 32 ............................ TACAATTTTACGCACACGCTTAACAATACTTT 7544 28 100.0 32 ............................ TGCCACATTTAACCGCTCTTGCGTGTAGATTT 7484 28 100.0 32 ............................ AAATTGTGCTTATCTTTAACTTCACCGGTTTC 7424 28 100.0 32 ............................ TACGCCTGAACCCTGTCCTTTCCCATTACCGT 7364 28 96.4 32 ...................A........ TTATGCTGATAAAATGATTCTTAAAGAAATAA 7304 28 100.0 32 ............................ CTACGGGTTGGCTACGCCAAACCTTGACAATC 7244 28 100.0 32 ............................ ATATCCACTAATAAAAGTATGGCTTCGCTTTC 7184 28 100.0 32 ............................ TTTTTAAAGGCTTCTAAAATCACTGAAGAAAC 7124 28 100.0 32 ............................ ACACCAAAACTATGCCGGTAATCTTTATTTAA 7064 28 96.4 32 ........................T... ATTCGCCCCGACGATAAATTTCTAACTGCTCC 7004 28 100.0 32 ............................ AATGTTGAAAACACTCGGTTGGTGGGGGAAAA 6944 28 100.0 32 ............................ TCTAGTAAAAGTCCAAGCTGATGACTGACTGC 6884 27 89.3 0 .....................C-.C... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.0 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TAAAAGTGCAATTAACTGCAGAGGGCTTACAAGACTATGCTCTTATTACATCGGTAACCCCTATTCCGGAAGAGATAGCCGAGCATCGCCGTTACCAAAGAGTGCATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGAAATTCTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAGCATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAGCCTGTTTCCGGCCTATTTAACGCATATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTCTTTTATAACCTTTTTTTCAAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCGCTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTGACATTCTAAAGTAAAATAACGA # Right flank : TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCAATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAGATCGGTTGTGATTTTTTTAGTCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //