Array 1 8394-7267 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPGT01000125.1 Salmonella enterica strain 2256 contig0000125_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8393 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 8332 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 8271 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 8210 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 8149 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 8088 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 8027 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 7966 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 7905 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 7844 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7782 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7721 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7660 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7599 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7538 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7477 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7416 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7355 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7294 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8701-10116 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPGT01000074.1 Salmonella enterica strain 2256 contig0000074_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8701 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 8762 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 8824 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 8885 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 8946 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9007 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9068 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9129 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9190 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9251 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9312 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9373 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 9434 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 9496 29 100.0 32 ............................. AATAAGGCGCGGTACCACCCTCGGCTTTAATT 9557 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [9599] 9599 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 9660 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 9721 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 9782 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 9843 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 9904 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 9965 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10026 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10087 29 96.6 0 A............................ | A [10113] ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //