Array 1 98946-99765 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010415.1 Azotobacter chroococcum NCIMB 8003 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 98946 28 100.0 33 ............................ CCCTTCGTACCGAGGATCATCGAAGATGCTCCG 99007 28 100.0 33 ............................ CTGTTCCCGGGCTCAGTGAGTGCGCCAGAGTCT 99068 28 100.0 33 ............................ TCGTTTTCGATCTGGCCAGCGGCGTGACGATGG 99129 28 100.0 33 ............................ CTGGGGGGGCTGCGGCTTGCGGTCTGCCCTTGA 99190 28 100.0 33 ............................ GTCTGTTCAGGAGGCAGCAGAGTTGCGGGGGCG 99251 28 100.0 33 ............................ CTGCGCAAGCGTGATCCTCACGCCTTCGCGTGC 99312 28 100.0 33 ............................ CATCAGGTGCGGCGGCTCGATGCTCCAGCTGGT 99373 28 100.0 33 ............................ CGTCGTAGAGCTGGTGGTCGGTAAGCAGAGTGC 99434 28 100.0 33 ............................ TGAAGAGTGAGCAGCGCGAAGGAAGCGAATATG 99495 28 100.0 33 ............................ TGGCTACAGCGCCTTGATACTGCTGGCAAGTCT 99556 28 100.0 33 ............................ TAGCCACATCCGCGACCTGGTGCGCGGGGGTAG 99617 28 100.0 33 ............................ TAGACTGCATGCGCTCTGTCGCGAGCTTGGAAA 99678 28 100.0 33 ............................ CTGCGCTGGCTATCCTGCAGGAAGAGCGCAAGG 99739 27 92.9 0 .................-.......C.. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : TCTACAAGGAACAGCTGTGCATCGACTTGGCCTTCTCGCTCACCCGCGAGCTGGCGGGCCGCTACGACAAGCACAAGGTTTCCGCCGGGTTTCGTCGCCGGGTGCTGGAAATGGACCTGCTGGCCAAGGTGGGCGACGACATCCTGGACATCTTCGGAGTGAGCCGTGCTCGTCGTAATCGCAAATGACCTGCCGCCCGCCGTGCGCGGCCGCATGAAGCTCTGGTTCGTCGAGCCCAGGCCCAACGTCTTCGTCTCCGGCATCAAGGATTCGGTCGCCATCACGGTCGTCGACTACCTGTACAAGCACTGCCCGCCCGAATCCGGGCTGGTGATCTTCCGCTCCCTGCCACACCCGCCTGGTTACGAGATCAGGACCATCGGCCCGCCCCGGAAACCGATGACGACCCTCTCCGGCCTGCAGCTCGTCATCGAAACCCTGACGCAGGCGTAATCGGCAGATCTTGTGTCTGCAGCCTGGCTCATTAACAATCTGTTGGT # Right flank : CCAGCCAGACTGACTGGAAATCTGATACTTCCCATGCCTGGAAGAGGAGGAAAATCTGCGCCTCCCCGTGAGCCCGAGCACAGTGAGGCTGCGCTATTTCACATAGCCCCCTTCCTGCAGATATCCGATGATCTCGCGGGCGATCTGCGCCGGTGTTTGCCCCAGGGTGATCACCCGCATTTCCGGATCAAGCGGAGCCTCGTAGAGCGAATCGATGCCGGTGAAGTGGGCGATCAGTCCGCACCGGGCCTTCTTGTACAGGCCCTTCGGGTCGCGCCGCTCGCACTCCTCCAGCGGAGTATCGATGAAGACCTCCATGAACTCTCCGGGAGCGACCAGGCGCCTGGCCATCTCCCGATCCCGCCGAAAGGGCGAGATGAAGGCCGCAATGACGATGATTCCGGCATCGACGAACAGGCGTGCGACTTCCGCCACCCGGCGGATGTTTTCCTCGCGATCGGCGTCGGTAAATCCCAGATCCCGATTCAAGCCATGACGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1636298-1638953 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010415.1 Azotobacter chroococcum NCIMB 8003 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 1636298 29 100.0 32 ............................. GTGATGAGCGATCCGCGTTTGCATGAGTGGGC 1636359 29 100.0 32 ............................. TAGGCTGCTGGATTTCATTTCCGCCAAGGATT 1636420 29 100.0 32 ............................. GCTGTTTTATCTGTCCTGGTGATCGTGGCGGC 1636481 29 100.0 32 ............................. CCGGTATAGGCGCCAGCGGCAACCATGGCGGG 1636542 29 100.0 32 ............................. ACCTCGGTTCGCCGGGACTTCGGAGCCCCGCA 1636603 29 100.0 32 ............................. CCCGCCGCCCTGCGCCATGTAGCCTTGAGGCG 1636664 29 100.0 32 ............................. AACCCAGCTGGCGTGATGGAAAACATACGCTA 1636725 29 100.0 33 ............................. CTCATATTCTGGCCGAGTTCCTGGGTGCCGGAC 1636787 29 100.0 32 ............................. CGCGCAGAACGCACCTCGTCAGGCTGCAACTC 1636848 29 100.0 32 ............................. GGCACTAGCCGTCTTGGTCAGCCGTATGAGAT 1636909 29 100.0 32 ............................. TGGTTGGTATACAGAGTCGACAAGCGTTTTCA 1636970 29 100.0 32 ............................. TTCCACCAGGCACGTTCGCAGCGCTCGGCCGC 1637031 29 100.0 33 ............................. GCCAAATCTTCCGGACTGAGATACATAGCAAAA 1637093 29 100.0 32 ............................. GTCTTTCACCAGAGCCTTGGTAAACGGTTGAT 1637154 29 100.0 32 ............................. TGCTTCGTTTACAGGGTGCGGCCCATGAGAGT 1637215 29 100.0 32 ............................. TTGATCGGCACCATAGTTGTCCAGCAGCAGGG 1637276 29 100.0 32 ............................. GATCGTTGCCTGCGACTCCGGACCTTGCTTGG 1637337 29 100.0 32 ............................. ACCTCCCGCATTCAGCCCCGCCCAGGACGCAA 1637398 29 100.0 32 ............................. GCTTTCATCCGGGGGTCCTCACGGGTCGACGA 1637459 29 100.0 32 ............................. ACTTGGGACGTGATCCACAACGGCCGATTGGA 1637520 29 100.0 34 ............................. ATTGAATGATGGTCAGAGCAGAGTCGATGAAACC 1637583 29 100.0 32 ............................. TCCCTTATCCAGTCCAGTACGCCCTTGAGGGG 1637644 29 100.0 32 ............................. CGGCCAAGCAAGCCCGCCTGAAAGGCGACAAC 1637705 29 100.0 32 ............................. TTTGATGAGAGAGATTGCTTTGCTATTCCCGG 1637766 29 100.0 32 ............................. CCGCAGGTTCAGCAGAACACCAGCCCGGCCTA 1637827 29 100.0 33 ............................. TTCGAGGATCTGTTTTCGGGCGAGGACACGACC 1637889 29 100.0 32 ............................. CACCTGATCGTCACCTTCAGCGATGGTTCCAC 1637950 29 100.0 32 ............................. CCGAGCGCCAGGAGTTCCTGGCGTTCATCTCT 1638011 29 100.0 33 ............................. CTGTAGGCCACGTTGGTGCCGGCCTTCAGGTTC 1638073 29 100.0 32 ............................. GAGTTCCGCCGCTGGGTGCTCGACATTCTGGA 1638134 29 100.0 32 ............................. ATCGCCCAGCCGACGAAGTTGCACAGGTAGGG 1638195 29 100.0 32 ............................. TCCTCGGCCAGATCCAGGAACAGGTCGATCAG 1638256 29 100.0 32 ............................. GTGCCGGCACCGGGGTGCAGCCAGCCGCAATC 1638317 29 100.0 32 ............................. CTGGAGGGCGTGACGAGCAGGACGAGAGCTTG 1638378 29 100.0 32 ............................. GACCTCTACGACAACGCCCAGGCGCTGGACGA 1638439 29 100.0 32 ............................. ATCTCCAACTACGCGGTGATGAGCGGTTCGGC 1638500 29 100.0 33 ............................. GCGAGATGTGCAGGTCGAACGTCTCGCTTTCGA 1638562 29 100.0 32 ............................. CGTGCGCTCGATGGCGTTCGGCAGGTGAACGT 1638623 29 100.0 33 ............................. TGACTCGGAGCGAGGATGGCAGCTCACACCCGC 1638685 29 100.0 32 ............................. TGCTCGAGCAGATAGGCGTTCACCAGGGGCCA 1638746 29 100.0 32 ............................. CCGTCCTTGCCGCCGTGAACGGGACAAGGGCC 1638807 29 79.3 89 ..............C..A......GTT.A ACGAAGGTCTTCGTCGGACTTTCCGACGAATGGCACCTCCTTGCCTGTCCCGGGCAGTGGGGGCTGTAACTCTGCCAATATATTCTTTG 1638925 28 86.2 0 .CTA......-.................. | T [1638934] ========== ====== ====== ====== ============================= ========================================================================================= ================== 43 29 99.2 34 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : GGCCAGGATCATCCCGACCATCGAGGAGGTACTGGCCGCCGGCGGCATCGCCCCGCCCGAGGCGCCGCCGGAATCCGTGCCGCCGGCCATTCCCAACCCCGAAAGCATCGGCGACGCCGGGCACAGGTCGCAGTGATGGCCTTCGTCGTCGTGGTCACCGAAAATGTGCCGCCGCGCCTGCGCGGGCGCATGGCCATCTGGCTGCTGGAGGTGCGCGCTGGCGTCTATATCGGCGACGTATCCCGGCGCACCCGGGAAATGATCTGGCAGCACCTGGCCGAGGGGCACGAGGACGGCAACGTGGTCATGGCCTGGGCGAGCAATCACGAGTCCGGCTACGAGTTCCAGACTCTGGGGGAAAACCGGCGTTTGCCGGTCGAGTTCGACGGCTTGCATCTGGTCGCCTTTCAGCCCCAGGAAAAGCCCGATCTTTAACAAGGAAAATCGGTAGATTTTTGGCGGCCGATTTTTTCCTTTGGAGACAATCGGTTACGCTAAGT # Right flank : GGGACACCCTGCAACCGTGCGCGTAGCTAACGAGCATTCCCCGCTTTCGTGGGGCCGATCCGCAGGGCCGGTGGATCGGGCAGGCCGCGCGAGCGGTCTGTCCGATTCGTCTTTCTCTCCCTTGTCGTTTCCCTGAGAACGTCGCTCAGCGCGGGCCGATTTCCCGCCGCAGGGCGGCGAGGCTGCGCTGGTGGGCAAGTTCGGCCGCAGCCTGGTCGTAGTGCCGGCTGCCTGTGCGGGCGAAGGCGTGCTCGCAGCCGGGGTAGCTGTACAGCTCGATGTTCGGCCTGCCGCCCAGACCGGCCAGGAGTGCGGCGCGGGCCTCGGCCGGGCAGAAGGCGTCCGCCTCGGCGATGTGCAGCACCAGCCGGCCGCGGATGCTGGCGGCCTCGTCCAGCAGATGTTCGATGCCGACCCCGTAGTAGCCGACGGCGCAGGCGACGTCGCTGTGGGCGGCGGTCAGATAGGCGAGCCGGCCGCCCAGACAGAAGCCGACGAAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //