Array 1 77624-77369 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLJI01000021.1 Chroococcus sp. FPU101 sequence021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 77623 38 94.7 35 ................T..........G.......... TTTTGATCAATGCGTCTAGATCTAATGCTTTTGTT 77550 38 100.0 35 ...................................... CAAAAACTCAAGGGATTATTAGATGATTTTTTTAA 77477 38 100.0 33 ...................................... GGACTTTAAACAGACAACTGGTTTTGCGAATGT 77406 37 89.5 0 ................T........-..A.......A. | G [77374] ========== ====== ====== ====== ====================================== =================================== ================== 4 38 96.0 35 GTTTCAACGACCATCCCAGTTCAGGGTAGGTTGAAAGG # Left flank : AATAAAATAGTATGATGGTATTAATCGCGCCGCAGGTCATGTTGATTCAACCTCTGAACTGCGAAAAGTAAGGGCTAGTTTACTTACCTGATGGTAGGTGTGCTTTCTGACCCTAGTAGCTGTCCATCCTGATGCTGATTTTTATGGCGAAAGCTGTAGAGATGATTAACTCGTAAACTTGAGATATTTAGTAATACTTCAATTTTACGGGGTAGGTGCGCTCCCAGCAATAAGTGACGTGGGTTTACCACAGTGATGGCTATTGAATCACCTCCGACCAAGGAGGAATCCACCTTAATTTTTTCTATTTTGCGCCGCACCCTTACTGTAAAATTTTTCTCAGAGAGCAGCGCAAAACCTGGAAAGTTTATAAAGCTTAGATTAAGCGTTTTCTGGGATGAGCGAGTTCGACAAATTAGAGCAGTAAATGATTATATTTGTGGAGCTTGGCGCAAACTACTCTTCAAGCCTTTGTTAACTAAAGGGTTTAAGAGTTAGGG # Right flank : TGAAAATTAAATTTTATGTGGTGGATTGAAAGGAGCACACTCTTGGTAATATAAGACTTGCACTTTTTTAGGTTTTCTTTTAGCCTATAAGTTGACTTAAACGACAATTAAATTGTTACAGCGACAATAATTTGTTATCGATGACAAATAAAATGTTACTGTACAGTACAAACACTAAGCCCGTGATGAGGATTGAACTCATGACCTCACCCTTACCAAGGGTGTGCTCTACCACTGAGCTACACGGGCGTAAATAAATTGTGGTGGGCCGAGCTGGATTTGAACCAGCGTAGGCGTAGCCAGTGGATTTACAGTCCACCCCCATTAACCACTCGGGCATCGACCCATTGATGTCACGATTAATAATCATAGCACATCTGCTTAAAAAGTCAAAGCATTCTTGCTAATTTTTTTACTGACGTAATGGCCACCACGAAACTTTATCACGAGTAGAACTATAAACCTCTTTTAACCCATCTGGATCAACAACTTGTATTAAA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGACCATCCCAGTTCAGGGTAGGTTGAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [9,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 13116-10229 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLJI01000061.1 Chroococcus sp. FPU101 sequence061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 13115 37 100.0 36 ..................................... TGGATTCTGACATTTTTGTAGTTCTGGTGGTTGGTT 13042 37 100.0 35 ..................................... AGTTTGTTTATACTCTTTGACAGAGGGGAATAGTT 12970 37 100.0 35 ..................................... CTTGATAGACTTTAGAAGGAACGTTGTGTCCGCTA 12898 37 100.0 34 ..................................... GCTTAGCCCCCCAAGAAGACCGCCCCGGTTTGAA 12827 37 100.0 36 ..................................... ATCTAACTGCTCACGGCTATTTTTTATTCTCTGTTG 12754 37 100.0 35 ..................................... TGCTTTGACGGCGTTTAAGTTAGTCCCCGCGGGGA 12682 37 100.0 36 ..................................... CGCCATCGCGCAGCTCACGATACCCTACTTTAATTG 12609 37 100.0 35 ..................................... CTGCATTACCCAAGGGTTAGTCCCTAAATTATGCT 12537 37 100.0 35 ..................................... TCCATTTAGTCAAGTAGCGCTTGATACTACTAACT 12465 37 100.0 36 ..................................... AAGCATAATCTATTAAAGGATAATACGGTTTCTTAT 12392 37 100.0 37 ..................................... AAAATGTACTGATTAGTTTGTCCTTTAGGGATTTTGA 12318 37 100.0 37 ..................................... TCGTCTTTAGCTGTCCTTCCGTCACAGGAACAGGAAA 12244 37 100.0 37 ..................................... CCGATGCGCTTTCTATTATTTCGGTGACGAAAGACAA 12170 37 100.0 35 ..................................... GATTAACCAGCAATGTCGAAACGATTACAGCCACA 12098 37 100.0 37 ..................................... AGTACGAATCATGTCATTTTAGGAACTGCCCTAAAGC 12024 37 100.0 36 ..................................... GGGACAAAGTTAGGCAAATAAAAGCACATCACAACA 11951 37 100.0 37 ..................................... CTGTGATTGTGGTCACACACGATCTTGAGAAAATGTG 11877 37 100.0 34 ..................................... CAAGTGTGACGATTCTTTCGGATACCCAGATTCG 11806 37 100.0 38 ..................................... ATCAGATAGCCACATCCCAAAACGAGTAGCCAGCTTTG 11731 37 100.0 35 ..................................... CCCAATACGATCAAAATAGAGCTAATCGCGGAATT 11659 37 100.0 36 ..................................... TGGCGATGGGGACGCTCGTGAAACTTATCTATGGCA 11586 37 100.0 37 ..................................... AGCGATCGCCATAGCCACAAATGATACTCCAAAAAGA 11512 37 100.0 35 ..................................... ATTTTTTTATTATTAGAATCATAAATAAATATTTG 11440 37 100.0 35 ..................................... ATCTTTACTGTAGAGAAAATAAATAACTTAGAGAA 11368 37 100.0 36 ..................................... ATAATTTTCTTTTCTAAAAGAAACAATTATAGATAT 11295 37 100.0 41 ..................................... AAAGAAAAGATATTTTTGATAATACTCGTTTAGGGGCAGTA 11217 37 100.0 36 ..................................... TGTTTTTTTTCCAGCTACATAAAATCCGATCAGAGA 11144 37 100.0 36 ..................................... GCAAATCGGAGGACGATCCGCTTGCGGATCTGCCTC 11071 37 100.0 36 ..................................... GCCCAATATTCATAGCGCGCAGAGTTAGAGTTTTGA 10998 37 100.0 37 ..................................... AGAGTTTTGAATTGCGCGAGCTAACTTAGGTAATCCA 10924 37 100.0 37 ..................................... GCAAATGCTCAACCCATTGTAATTAGCAAAGAAGGCA 10850 37 100.0 35 ..................................... TGCGATCGATAAACGAATCCGTGTCGGAAAATCTC 10778 37 100.0 37 ..................................... TCTACCATTGGAAGACAGTTTTTTGAGCTAAATCCAA 10704 37 100.0 36 ..................................... TGATTGTTTTACTTAATAGGCTTGTTCCAATCGGAT 10631 37 100.0 35 ..................................... AACAATATATAAGAATGTTTCAAGAGTACTATAAA 10559 37 100.0 35 ..................................... AATTATTAATAGATTCTATTACATCAGTATTATTA 10487 37 100.0 36 ..................................... GTAACCCCAGGGCATCCTATGTCTTGGACGTGTAAC 10414 37 97.3 38 .............A....................... AGTTTGCACGCGCATTAAAGATATGCCCGACCCAGTAG 10339 37 100.0 37 ..................................... AAGCGTTAGGAGTCTGGGGAGTTCCTACTCATAAGGT 10265 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 40 37 99.9 36 CTTTCTATTAACTGAATCCTGTTTACGGGATTGAAAC # Left flank : TTTAGACGCTCAACAGTTTACTGGCT # Right flank : CATTCCCACCGCTGCACATGAAGATAGCTTAAGTCGGTTAAAACTGAGATCTTGCATCATTATCAGTGAGTTTTATAAACCACCGTGAAATCAATTTCACGGCTCACAGCTAAAATCCTACAGGGCTTACAAGCCGAAATCTTCAAGTGGCGCGGACAGCCCCTTGTTAAAACGGATTAGGATACCTCTAATTAGTCGGTTTCAACCGACTTTAGCTATCAGACTGTGAATTCATTGGCTGGCTAGAAAGTAAAAAATGTATTAATTCTTAAACAAAGAGCATACTATAATTTAGACAGATTGTTCCCCAACTCAATTAAAAAAAATTGATTTGGAGTGTTTTATGCCTTTTATCTTAATTAAAGGGGTTTTTACCCCACAAATTGGCGAACCTGACGGGGATTCTGTTCGTTTTCGTGCGAATCAAAGAGAATTATTATTACAATTAGAAGGGCGACGACCAAATATATCAATGAGTAACGGAACAGTGCAACTCCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATTAACTGAATCCTGTTTACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 97768-98232 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLJI01000007.1 Chroococcus sp. FPU101 sequence007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 97768 36 94.4 35 ..A...............................G. ATCGCCTCTCAACGTCCTACACGCCGACGGGCCAG 97839 36 100.0 36 .................................... TTCTTGCTCTAATTGAAGAATTTTTTCAAGGTTACT 97911 36 100.0 36 .................................... TCCCAAAGGTAGCCCGTTTGACAATCCGCCCTAACG 97983 36 100.0 35 .................................... ACCGTCACTACTAAATCAACACCATCGTTACGCAC 98054 36 100.0 36 .................................... AGTCAGCAAGCTAAGATTAGATTATGGATTGGGATC 98126 35 97.2 36 ........................-........... ATCACCAAATTTTCTACTGAATACCGTAACAATAGC 98197 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 7 36 98.8 36 TTGAACAACGCCTAACGGCATTAAGCCACGAATCAC # Left flank : CTGCATACTATTCTAAGACTTCCTACAGGGGTTTTTTATAAACAAGGGGTTAAAGCCAATGTCATCTTTTTTGATAACAAACCCGCAGCTAAACACCCCTGGACAAAAGAAATTTGGTTTTATGACTTCCGTACTAATATACATTTTACTCTCAAGAAAAATCCTCTTAAAAAAGATGATTTAGGAGATTTTATCACTTGTTATAGCCCCGTAAATCGTCACAATCGTACAGAAACTTATTCAGAAAATAACCCAGAGGGACGCTGGCGCAAATTCACCTATGAAGAAATTATCACACGCGATAAAACCAGCCTTGATATTTTCTGGCTTAAGGATAAAAGTTTAACCGACCTCGATAACCTTCCAGCACCCGATATTCTTGCTCTAGAAATTCTAGAAAACTTAGAAGCTGGATTGGAGAGCTTTCGTACTATTATAGGAAGCTTGGAAAATAGTTAGACTCAGATTGATTCACACCTCAGTTAAATCAAGGTGGAATT # Right flank : CCCCAAAGACGAGAACCTTTGTCTGATGAAGGCTTATTGATAATCTTACAAGTATCTTTCAAACTAAGATATCAAAAATGCAAAACTTATCACCTTTTTTTTGTCTGTTACCACTTAAATCTTATTTTTATAAGCCTTTTTGTGAAATTGCAAGCATCTTCTACCTCAACTAAATCTGCATATCGCTTATCTTGTCAATCTTTTCACCATTTCTCTACAATAAATTTTCTTACTATTCAAAGATACTTGTTAAATCGGTGATTTAATCATCGTCCATGCTAAATCAGGAGGCAATAATCTATCTATTTCCTCCACTCGATATCTTAAAGAACGGGTATTTCTTATCCCCACATGGTCAACCCAATAGGGTAAAGTTAATCGTCCTCGATTATCCCTTATCACCCACCGCCTTACTCCCTCTGGATACTCTTCAGAGACAATTTTTATAGTCTTAATCAACTGGTCACTTTCCCCTAGGAATAGACAGCCAAACCGTTTTA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACAACGCCTAACGGCATTAAGCCACGAATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 393653-405880 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLJI01000002.1 Chroococcus sp. FPU101 sequence002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================== ================== 393653 37 100.0 110 ..................................... TTTTCTAACTTCGGAGGATCAATTAATCTTAAAGAGTCATGATTTATGTCATCTGTTTACGGGATTGAAACTTTTCTAACTTCGGAGGAGGTTAACCCCTTTGGAGGAAA 393800 35 75.7 39 GA.C.C..C--T.T....................... TTTTCTAACTTCGGAGCGATTGGATACGATTCGCATGGG 393875 37 100.0 35 ..................................... TGATTCAGACACCCTCGGATTTACTCAACGACAAG 393947 37 100.0 36 ..................................... GTTGATTCCGTTTTTCCCTACTGCACTCTACTCAAG 394020 37 100.0 35 ..................................... ATGAAATTAATAACGCACTTCAAGGGGTAAAACAA 394092 37 100.0 43 ..................................... ATTCCTTACTCGTCCAATAACAAACCCCTTTTTCGGTCTCAAA 394172 37 100.0 38 ..................................... ATTCCTTACTCAAATGATCGCAATAGCGTTCTATCGCC 394247 37 100.0 40 ..................................... TGATTGGGCTAGTTGGTTTCTGTGGTTGAGACGGTTTTAT 394324 37 100.0 36 ..................................... ATAACGATCACGTTGTCGTGCCGTACCGTGTCGAAA 394397 37 100.0 36 ..................................... TAGAATTGATTAAGTCGGCAGAAGACCCCTGTTTTG 394470 37 100.0 35 ..................................... TGTTTATGCCCGCATCATCGGCATTGAACACGAAA 394542 37 100.0 35 ..................................... TGCCTAAATGAAATCCTGTCTGAACGCGACGAAAA 394614 37 100.0 46 ..................................... AATAGAAAGAGAAATCTTGGCTTTTTTGTTGACACGTATCTCTAAA 394697 37 100.0 35 ..................................... CGGTTACACCACTTCCATCAGCGTCGTAGCTAGAG 394769 37 100.0 35 ..................................... TGGCATCTCTCGCTTCGGTAGAGGACGGGTCAAAA 394841 37 100.0 34 ..................................... ATACCAATAAAGAATATGACGATCGCATTTTTAG 394912 37 97.3 39 ....................C................ AAGTGAATAAATCGACCCAGATTCCGTTCCCACTGCTTG 394988 37 100.0 34 ..................................... AATAAAGCGCTCCTTAGTCAGTAAAATTCTGGTG 395059 37 100.0 33 ..................................... TCTTGCTCTCTCTTGAAGTGGTTAGCCTTCGAT 395129 37 100.0 35 ..................................... ATTAAAATCACACTTTAATTATTATTAAACATTCA 395201 37 100.0 36 ..................................... GACTAATCATGGACGCAGATAGAGAAGATGCTGAGT 395274 37 100.0 33 ..................................... TCGCTTCCCGTCGTCGCCACATAATAATTTCGT 395344 37 100.0 36 ..................................... AATCCTTTAATGGGCATATATTTAATCCTCGTAATA 395417 37 100.0 35 ..................................... CTCCTAAAATAAAGCCAGCCTTAGAACTAAAGGAA 395489 37 100.0 37 ..................................... GCCATCTACATCACTACTGGGGTAGTCACCATGACTA 395563 37 100.0 38 ..................................... GCTACAAGAAAGGTTGGGCGTTTCATCACTGGAAAGCA 395638 37 100.0 37 ..................................... TATCAAGATCACTCAAGAACGCTCGAAGCTACTCGGA 395712 37 100.0 37 ..................................... AATTTGCTACAGGTCATTGGGATTGTCGTGTGATTGA 395786 37 100.0 41 ..................................... AATAAATACTTACTTAGGTTTATGTAAAAGAAAGACTCAAA 395864 37 100.0 35 ..................................... TTTAGAAACCGCGCATCAAACCCTGCTCAATGATG 395936 37 100.0 36 ..................................... TGTAATTTTCTTCAATCCAAAGGTATTAGCTATGTA 396009 37 100.0 36 ..................................... AAGTGATTGAAGTCGAAGCCAAGCCAATAGAGAAAC 396082 37 100.0 35 ..................................... TTAAACGGAACTGGAGACCTAATCGAAAAATCAAA 396154 37 100.0 37 ..................................... TTCTTTTGTGACGACTTCTCTGATGATACTCATGATT 396228 37 100.0 35 ..................................... ATCCAGTTAGAAAATCAATTAGAAAAGGATTATGA 396300 37 100.0 37 ..................................... AAAACTAACTTCAATGGAGCCGTTGAGAATGTCCGTC 396374 37 100.0 35 ..................................... ATTGAGAGAGGATAACCCCGCCCCACTGTACCTGA 396446 37 100.0 38 ..................................... TTAGCTTAAATGCAAAATTACTTTGAGCCATTAATCTA 396521 37 100.0 36 ..................................... CCTAAAGCTTGGTTCAAAAGTAAAGAGCAGGAAAAA 396594 37 100.0 35 ..................................... ACTTCGTCAAGTAATATATAAATATCATCTTGAGA 396666 37 100.0 35 ..................................... TACCAGACTTCAAAGAGTTTTTCTGCTTCAATATA 396738 37 100.0 36 ..................................... TAAGCATCCATGAATTTGAGGGGAGCTCCCACAAAC 396811 37 100.0 36 ..................................... TATTAATAGAACCAAGGTTCTCGTAGCCAACCGATA 396884 37 100.0 35 ..................................... ACTACGACCTCAAGACGTGGCAAGAACGCACATCA 396956 37 100.0 35 ..................................... ATTAATGGAGACTGAACTCTGCGAAAGGCAGCCGA 397028 37 100.0 35 ..................................... GTTATCAAGAGTCTCAAGTGACCAACCCCCCAGAA 397100 37 100.0 39 ..................................... CAGCTAAAGGAGGTTTTCAACTAGGTTCGGGTTCGGGTT 397176 37 100.0 36 ..................................... ACTAGCTGGTACCGACCTCCGATGGTTAATAAAGCT 397249 37 100.0 38 ..................................... TTCTAATTCCGATAATTTGGGTTCAACTGCTAAAAACA 397324 37 100.0 37 ..................................... TTTAGTATTGGCTTCGACGATTTTCTCGAAGAACCAA 397398 37 100.0 36 ..................................... ATGTTCACAGGCTGTGTTACATTACCCCGCCCTCGA 397471 37 100.0 38 ..................................... AAGAACAGGCCCGATTGTTGAAGCTTAAATTATTTGAG 397546 37 100.0 42 ..................................... TTGTAGCCTACCTTTGTAGGCAATGACGGGAGTCCGCTTGTA 397625 37 100.0 36 ..................................... TACTTGTTTACCTACATCATCGCTGTAAATATATTG 397698 37 100.0 36 ..................................... CAGTAATCTTTCTTGTGGATGGATTGGAGATGCAGC 397771 37 100.0 35 ..................................... GCCAAGAAAAACCCGTTAACCGTACCCCAGCCACC 397843 37 100.0 34 ..................................... GCTACTGGTGATGCGGGTGGGTTTAACTTAGAAT 397914 37 100.0 36 ..................................... CTGGTGTGTTAGTTCACCATACTATCTTTTAGAAAA 397987 37 100.0 36 ..................................... TTGAAATTAGCCAACCAATCAAAGGGCAAATCAAAC 398060 37 100.0 37 ..................................... GAGATGGAGCGACTGAAGCAGTATCAAGTAGTGCTGT 398134 37 100.0 37 ..................................... AAAAATCGGGTCAATCTATCCACACACTCAGTCAATT 398208 37 100.0 38 ..................................... TGGTTGTCGATTCTGTCGAAATGATTTCGACACAACTT 398283 37 100.0 34 ..................................... ACCCCTACTCCATCCGCGTCGTAGCTAGAATTGA 398354 37 100.0 39 ..................................... CAAAGAAATGCACGATATCAAGGGGTTTGCTTGGGGTTT 398430 37 100.0 34 ..................................... TAAGATACACGGTTTGTTCATGGTTAGGGAAAGG 398501 37 100.0 35 ..................................... ATGCCGCGGGAGTAAAGATTCTAGAATAAATTACA 398573 37 100.0 35 ..................................... AGTGAGGGCTTCATACTCTTCGTTTCCATTACGGG 398645 37 100.0 37 ..................................... TCTAACCAAGCCTTATAAGGAGTCTCTAAACTAGAAA 398719 37 100.0 38 ..................................... ATTGAGGACCTAGCTGCCCAGATCCCCAAACCGATTAG 398794 37 100.0 35 ..................................... CTCATCAGTTTGGTACACACTCCATAGCTTTTTCT 398866 37 100.0 37 ..................................... ACGCCTAAACTAAACTCTTTGCGATAATTTAGTTTGA 398940 37 100.0 40 ..................................... TAGTCCACATAACGGACTTTACCGTCTTCAACAACTTCGC 399017 37 100.0 40 ..................................... CTAAATAGTTATAGTACAGTACATTTAAACTAGAACTGGC 399094 37 100.0 36 ..................................... TTGGCTTTATTCAGAGGCAGATGTTCGATTAAACAA 399167 37 100.0 36 ..................................... TGGACACTCTACTGACTCATTTACAAGAAATCCTAA 399240 37 100.0 36 ..................................... TGTTACTTTTTGCTTCCCCAGAAAAAAGGTTTATAT 399313 37 100.0 36 ..................................... CCCCATAGATCAACTCAAACAAGACTTCCTTATTTT 399386 37 100.0 36 ..................................... AAAAACAGCCATACATAGTCGTTGTAACTGAGTGTG 399459 37 100.0 36 ..................................... CCTAAATAAAGCGTCTACCGATATTGAAGGAAAATA 399532 37 100.0 35 ..................................... TCCTGTCTCAAAAATAAAATACCCTTCCTCAAAGT 399604 37 100.0 34 ..................................... GCACCGCCGCACTGGCCCAACTAGAAACTATTAC 399675 37 100.0 34 ..................................... TGTTTAGGAGATCTTTAGTCGGGAATCTCCAGTC 399746 37 100.0 35 ..................................... AGTCTGGTGCCACTCTGGGGTTGCTTGAATTGGAG 399818 37 100.0 37 ..................................... AGGCTGTATATATAATATTATCCAATGGTGAATCTCT 399892 37 100.0 35 ..................................... ATACGAGTATCGATTAGGGTGTTGATGGCTTCAGG 399964 37 100.0 35 ..................................... CAAATCTTTGTCTTCAACTAACTCTTTTAGTTTAG 400036 37 100.0 36 ..................................... AAATAACTCATTTAACCTAGACGAATAGGATTTGAG 400109 37 100.0 35 ..................................... ATACTAAATTAGCCATGGTGGTTTGTTTCTTCTTT 400181 37 100.0 36 ..................................... GGCATTGCTTGGGGAGATAAAGATTATAACTATAAA 400254 37 100.0 44 ..................................... TTTAATCATTAAAATCATAAATCATTAAGGGATAACTGCGATGC 400335 37 100.0 37 ..................................... AAAATAAGTATAGCCCCGCCCTAGAAGTTCTAGGGCT 400409 37 100.0 35 ..................................... TCTAGCAGGGACTTACACACAAGCCCTTCATATTA 400481 37 100.0 35 ..................................... TACAGTAATAGCTTGCCCAGCGTGCCCAGGCAGAC 400553 37 100.0 37 ..................................... TATGTTCCGATATTTCTTCGTGGAGAGTCGTTTCAAT 400627 37 100.0 38 ..................................... AGCCCGTCACCATCAAGAGTAATTAGCTTGCCTCGAAA 400702 37 100.0 37 ..................................... TTAAACGGAACTGGAGACCTAATCGAAAAATCAAAGA 400776 37 100.0 36 ..................................... GAAACAATTACAATGGCTAAGGCGGTGCAGTAATGC 400849 37 100.0 38 ..................................... TTAAAAGACTTATTTACACAGGTGCGCTATTTTCAGGA 400924 37 100.0 36 ..................................... TTTAAGTCTACATAGTTACTGCGCGCGCTCTTAACT 400997 37 100.0 36 ..................................... CTTAACTAAGGTGTGATGACCAGTAAGCGTGTAATT 401070 37 100.0 38 ..................................... TTTAAGCCGTTGGGCTTTTACTACCTCAAGGGCTCTTT 401145 37 100.0 37 ..................................... CTGAATAGTACTCCCTCTACCTTCAAGATAGTAATAA 401219 37 100.0 36 ..................................... TAGGGTAGTCCAGTCCCAAGCGTGGCCACAATCAAA 401292 37 100.0 38 ..................................... ATCCCGACGGGAACAGGATGGCTTGAACCTAACTTAAA 401367 37 100.0 34 ..................................... ATACAATACCCCAAGCCAAAGCTCTGAGAGGTAA 401438 37 100.0 36 ..................................... TTTCTGATGGAATCATACTGGTTTCATCTAACAAGA 401511 37 100.0 37 ..................................... AATCCTTGTCAACTTTAAGTTCGCGGCGGGTTACGAC 401585 37 100.0 36 ..................................... CTTAGATACAGGATGCCCAAAGCTTACAAGTCTTAG 401658 37 100.0 38 ..................................... GTTTTAGTAGCTTTCATGTATTAGATGTGTTGTTGTTG 401733 37 100.0 36 ..................................... AGTTCCTAAGTTATGCTTGATTAGAGATATCCATTT 401806 37 100.0 37 ..................................... ACACCTGGAAGCACAGCAGGAAATATAGGGGTTTCAA 401880 37 100.0 35 ..................................... AGCAGCGTCTCGTCTATTTCTTTGGCGAGTTCACT 401952 37 100.0 37 ..................................... TGTGCTTGTTCGTTTTTTTCGACTCTGGCTCGTTTAC 402026 37 100.0 37 ..................................... AAGTTCTATCGGTTGGAACTGAGCTTTACCCATTAGG 402100 37 100.0 38 ..................................... AATAAAGGTAGGTTAATTATGGTTATTAAATTAAACAA 402175 37 100.0 37 ..................................... AGCTAATTAATGCTTTAGAAGGGGGCGTTCTAAAAGA 402249 37 100.0 36 ..................................... TAATATATGATTCTGTTTCTAAATTATCTAAAGATA 402322 37 100.0 38 ..................................... AATAATTTAGATTCTAAATATTCGATAACGTCTTTATT 402397 37 100.0 39 ..................................... AAATATTTGTGCAGTTTTTTATTTATATGACATAGTGGA 402473 37 100.0 36 ..................................... GAAGCTAAATCAAAATCTGGATAATCACTTCTAACT 402546 37 100.0 36 ..................................... ATCTCTCTAAAACTCTCAGGTATACTGCAAAGTTTC 402619 37 100.0 36 ..................................... TTTTTAATTTGTCTTAATCTCACTTCTTTTTCCCAA 402692 37 100.0 35 ..................................... GGATATGCTAATTTACTATTAGGGTCATGTTTATA 402764 37 100.0 36 ..................................... AGAAGAGAAATTATTAGGAAAACAATCTAAACTTTT 402837 37 100.0 36 ..................................... AACAATATTCACAATATGCTGAATGTTCTTTAGATT 402910 37 100.0 35 ..................................... GATTAGCTTATATGCGGTCTAGAAAACGTGCGGGT 402982 37 100.0 37 ..................................... GCTAACACTAAACTAGATAATGGATGTGATAAAGATT 403056 37 100.0 35 ..................................... ATTTCTTTTAGCTCTTTTACCTCATCTATTAAATA 403128 37 100.0 39 ..................................... ATTAGTTTCTTACTATTTACTTTACAAAAATTAATTAGC 403204 37 100.0 36 ..................................... TAGGAGAGCGTGGAGTTTTAACAAATGAAGTTATTA 403277 37 100.0 39 ..................................... ATAAAATTAGATCTTCATCTATTGAGTCTGACCCATCTT 403353 37 100.0 35 ..................................... ATTTTCGGAGCCCACTTGTTCTAAGTCATTAACGA 403425 37 100.0 38 ..................................... CTTAGATACAGGATGACCAAAGCTTACAAGTCTTAGCT 403500 37 100.0 39 ..................................... TGATCAGACCCACGTTATGGCACTCTAGAGCCTGTAGGT 403576 37 100.0 33 ..................................... CTACTTTTGGCTTTCTATCTCCCTACGCGTCAA 403646 37 100.0 41 ..................................... AACTTTTTATTGATTGGAACAGTGTTTGGGGGAGTATATTA 403724 37 100.0 37 ..................................... AACTACCCAACACTTCTGCTACGCTGGCTTTGTGTGG 403798 37 100.0 34 ..................................... AGTCCTCTCCGACTAGAAAGTTAGGCCAAGTTTA 403869 37 100.0 37 ..................................... TTCTGTGAAAAGCGCATCGGCTATATTCGGACTCTAG 403943 37 100.0 36 ..................................... GTTGGTCTTCTATTCTGAAGACTTCTCAAAGATTCC 404016 37 100.0 38 ..................................... GTATCGAGGCGGAAATGGTCTAGGTCTTTGCCGAAGCC 404091 37 100.0 37 ..................................... GGAAGAAACCATTAATTTACTAAAAGCCAAACAGTTT 404165 37 100.0 36 ..................................... TTCCATCCCCCTTTTTTATTGGAATATTAGAGATTA 404238 37 100.0 39 ..................................... TCCCGTGTCGGTTCGTTGTCGATTAGCCCAAAGGTTACT 404314 37 100.0 37 ..................................... GAAAAATCACCGTCACCACGTCTGGAGGAACGGCAAC 404388 37 100.0 38 ..................................... ATGGCTTTACCACTGATACGATTACTATTTCAGGAAAT 404463 37 100.0 35 ..................................... CCGTTCCTGAAAAGCAGCGATCGCATCTAACAATC 404535 37 100.0 35 ..................................... AAGCTAAAATTTCATCTGTCAAGGAATCCGACGGG 404607 37 100.0 36 ..................................... CCAATAGACATTTGTTGACTGTCCATCGATATCAAA 404680 37 100.0 35 ..................................... GCCTTCTGCCAAGATTAACGATCGCCCTTCTTTAA 404752 37 100.0 36 ..................................... ATGGCGGAATACAACCCGTCTCTCTCCCAAAGAAAA 404825 37 100.0 37 ..................................... GTTTTCTGAAGACCAGATATTCAATCAAGATTTTAAC 404899 37 100.0 38 ..................................... CTGCCACGCTGATTACACGACCACGCCGTGACAACTCC 404974 37 100.0 35 ..................................... CTGAAATTGGACAACCAATCAAAGGGCAAATCAAA 405046 37 100.0 38 ..................................... AAAACAACCGTTCAACCATTATTTCTTTCGGTACTGCC 405121 37 100.0 35 ..................................... ACGTGTTCTGGAGTCCGCCATTAAAAGAGGAACGC 405193 37 100.0 35 ..................................... CGATTCAATCCTTTGAAGGAAGTGATATTCCTGCA 405265 37 100.0 37 ..................................... ACCTCGATACACCGATTACGGGCTATATTTTCCGTCA 405339 37 100.0 35 ..................................... ATGCTTTTTCGTCTTTGACACATTTGGCTCTTTTT 405411 37 100.0 34 ..................................... TTCAGTATCAATCACGGCGATCTTTGAGCCTAGT 405482 37 100.0 36 ..................................... TTGTTATGTCTAGAACTAGAAAGCTTTCGCGTCTTC 405555 37 100.0 34 ..................................... TTACAGCAAAAGACTCAGTTGATTTAGCTACTGC 405626 37 100.0 35 ..................................... CTATTGTTGATAAGTATCCGCTAAACTGGTCAAGG 405698 37 100.0 36 ..................................... TTAAATGGAACTTTCTGCAAAAAGAAAAAAGATAAT 405771 37 100.0 36 ..................................... AGCCATCGTCTTCGCGCCACTTGCTTTTAGGTTTTG 405844 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================================================================== ================== 166 37 99.8 37 CTTTCTATTAACTGAATCCTGTTTACGGGATTGAAAC # Left flank : TAGATGAATACACAATTTTACCTAATAATTTACGATTTACCAGACACAAAAGCAGCCAATAAACGCAGAACACGGCTGCATAAACTTCTATCGGGTTATGGTAAATGGACACAATATAGTGTTTTTGAATGCTTTCTTACAGCCATTCAATTCGCAAAACTTCAGCAGAAAATTGAAGAATTAATTAAACCCGCAGAAGATTCGGTTAGAATTTATGTACTAGATGTCGGTTCAGTTAAACGTACCATTACCTACGGTTCCGAAAAACCCCGACACCAGACCGTTATCATTTTATAATGGTTTCTAGAGCTATTTTTGGCAAATCGAAGTGAGGGCGAAAACCCTAGGGGTTCTGCCAAAAACTCTAGAACCTTGACAAATCAATAGTTTTAGTGTTTGATCAATATAGTTAATGAGGCTTTTAATGAGAGTTATTTTCAATTATTTGAGAACTGAGATCAGGTTTGTCAAATTCCTATTTCAAACTGGCTCTCTGAAAG # Right flank : GCATCTTTCAGATTCAGCATAGTATGGATATAACGTTTTTCAACCGAAAAATTATTCATATCAGGAGTATCTGTATTAGGGTTAAAATCTTCGGGGTGCAAAATATCTTGATAAGTTTTTTCTTGTAGTTCCGCTTCGCTATAGCCTGTCAGTTCGCAATAACGTTGATTCACCCGAATAAATTGGCCCGATAAAGCAACAATCCCAATTCCAACAGAAGCTTGTTCAAAAATCGCTCTAAATTGAGTTTCACTGTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATTAACTGAATCCTGTTTACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA //