Array 1 40748-40120 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDNY01000003.1 Acinetobacter sp. 2JN-4 ZB100002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40747 28 100.0 33 ............................ ATGTCCGACTTTGAATCAGATCGAATCAGGCAC 40686 28 100.0 32 ............................ ATGGCTGCATAAGTTAAGTAGGCTTTATTGCC 40626 28 100.0 32 ............................ AATTGAACCGCGTGATTTGCCGAAATTAAAAG 40566 28 100.0 32 ............................ CTTATTTATATTGCTTTTGATACCAGCTTTGG 40506 28 100.0 32 ............................ TGTAGGGAGTACGGCGAGCACATTAGCTGCGC 40446 28 100.0 32 ............................ TGATACTCGCCGTTATGCAGCCTTGGGTAATT 40386 28 100.0 32 ............................ ATTCACTTTGATTTTGTAGTTATCCATCTCAA 40326 28 100.0 32 ............................ ATAGCGGCAGGCTGCATGTTAAGAATCCCTTC 40266 28 100.0 31 ............................ AAGCATGTGATCAGAAGCAAATTCTATAGAT 40207 28 96.4 32 ..................G......... TACACCGAGTCTTAAGCCCGAACGTTCTGGCT 40147 28 82.1 0 .......................CACCC | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TAAACGCAATCTGTCGTTGTAGATTGCTCATTTCAATAGTATCGGCATCAACAATCGTTATTTTTCCTACACCAGCACGAGCAAGCAGTTCGGCACTGGTACAACCGATCCCCCCTGCACCGACAATCAAAACATTAGCAAGTTTCAGTCTTTCTTGTGCTTCAATATCCCAACCATCCAATAGAATCTGACGACTATATAGATGCATTTCATCGTCACTCAGTTCAAATGCATTTTCTTGATGGTCAGACACGTTCTCTCTTCTCTAATGAATCACTCGTTCTCGATTTTAAGTGTGCAAAATGATTTAGCAAAGTAATAAGTGTTATATCTTCAATGATTTTACTTTGACAAACTCATACTTTTACCCCAATATTTCCATTACTCTTTAACAGCCTAATAAAATCAATAAGTTACGACACTCTGTAAAATCTTTGGGTATTTACATAAATTAGCGCTCAACTTTATGTTTTTGCTTAATTTATTTATGCTATTTTATA # Right flank : CCTACTTCTTCTGATCATGCATAATTTCATAAGACTGCGCTCTCAATAACTCCTCTTTAGTACCAAATGTACTATTCCGAAGTTGGTTAATTGATTTCTGTTTGTTTGCATCATCCATATCACTTTGCAAAATTCGCTGACGCTCTGACAGATAATGATTGACCTGTTTTTGCCATACAGCTTCTTCATGATCAACTTTTTCTAAACGATCAGCCGCTTCTGGTCCCAGCAAAGTTTCTCGCATATTACGTAATTCTTGAGCTGAGCCACCCTTTTCTTTAATTTCTTGAGTAAGTTGCTGCAATTCAGAAAATTGCATTGAAACTTTCACACCATCTGCCATCGTCTCAGGTAAATGATCAATCGTCTTCGCCAACTCCATTGCCTTTTGCTGAGTGGTTAAACTCTTATTGGCGTGAATGCGCATTTGATCAATACTAAACTGATTCAGACTTCTTTCATTCCCAAAAAAAGCTTGGATTTCAGCCTCATTAAAAAAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 132660-135148 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDNY01000004.1 Acinetobacter sp. 2JN-4 ZB100003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 132660 28 100.0 32 ............................ ACACACACATTCTTCTGGGATTATCGGAACAA 132720 28 96.4 32 C........................... ACCTGCTAAAAATAGCTTTGTACCATCGGAAT 132780 28 100.0 32 ............................ TGCATCTAAAGTTGCACTGTCATCGTCGGCAC 132840 28 100.0 33 ............................ CTCAGAAACAAGTACCTGCTTACTTTAATATGG 132901 28 100.0 32 ............................ TTTCAACAGAATGCAATTCTTACTCATTGTCG 132961 28 100.0 32 ............................ GCTGGGGTGGGTTCGCAGTTTTGATAAATATT 133021 28 100.0 32 ............................ AGTCAACTCTATTGATCGATGCCAGTATTTAT 133081 28 100.0 32 ............................ TGTAGGGTTATTCACTCCACTTATCCAGTTGG 133141 28 100.0 33 ............................ TTGACTCAGCATCCTTAAAATATTCAATTGCTT 133202 28 100.0 32 ............................ AAAAGAAGGAAACCATAGAGAACGTGTTATTT 133262 28 100.0 32 ............................ AGTGCGTCAGGATTCTAAATCGCCTGATGCTT 133322 28 100.0 32 ............................ TCACTCAGTTTTTCATTCAACACCAACAACCA 133382 28 100.0 32 ............................ TTTTCAAAGATGCGCTTATTGAATACAGGGAT 133442 28 100.0 32 ............................ TAAGCGTGGTTGATGGATGACCATACGTACTT 133502 28 100.0 31 ............................ GCAGTGTCTTGCCCTCCGTGTTAACAGCATT 133561 28 100.0 32 ............................ CAACAAACAAGGGCTTGAAATCATGGCTCGCA 133621 28 100.0 32 ............................ TAATTGAAGAAATGCTTGATGGTGCAAACTAC 133681 28 100.0 32 ............................ ATTGAATACGACAAAGAATTTGCTGTGCAATG 133741 28 100.0 32 ............................ CGTTGAATGATATAAGTCTAAAATTAAACAAC 133801 28 100.0 32 ............................ TTGCGCCCAGCTTATAAGAGCCATTGAATACG 133861 28 100.0 32 ............................ TATCAAACAAGCTGGTATTCGAGATTACGAAA 133921 28 100.0 32 ............................ ACTCCATGCCGCCTTCATTAATTCAGTGTTAC 133981 28 100.0 32 ............................ AAGAGGTAAGACTGTTGTCGGCAACACAAGAG 134041 28 100.0 32 ............................ ATAATACAAATGAGGGAAATCACTAAACAAAT 134101 28 100.0 32 ............................ TTATTGCACGTTAGTAGAAGTCATTTCTAAAC 134161 28 100.0 32 ............................ ATTCAACAATTGAGCGATACCAGTACCGCCTG 134221 28 100.0 32 ............................ ATTCAACAATTGAGCGATACCAGTACCGCCTG 134281 28 100.0 32 ............................ TGAATAGGTGTCTGTCCTTTAATTGTGGCTAC 134341 28 100.0 32 ............................ GAGCACACAAGTAAATCACAGCTCAGGGGTTT 134401 28 100.0 32 ............................ GCTTGACGCGCGCCGATCTGACCGTTACGCAT 134461 28 100.0 32 ............................ TGACCACTATAATATTGATGAGTCAGAATGCC 134521 28 100.0 32 ............................ TTTAGCGACCAATTCACTTTTAATTTCATCAA 134581 28 100.0 32 ............................ TAGATCTGGGTAAGCGTAAAGGCATATTCAAG 134641 28 100.0 32 ............................ TCATTGACGAACTCAAAATCCTCTGCGAACTC 134701 28 100.0 32 ............................ CGATCGAAGTGCGAAAAGCCGCGGCGAAAAAG 134761 28 100.0 32 ............................ TTTATGATCAATTTCAGGAATACCATGTAATA 134821 28 100.0 32 ............................ CATCACGGGCGATATCAAGCGCCGTTTGTTGC 134881 28 100.0 32 ............................ TCTCCCCACAACCGCATACCTTCTGCGTTATT 134941 28 92.9 32 .......A.........T.......... GCTGATCATGCGTCTCAATTTCTTGATACACA 135001 28 92.9 32 .......A.........T.......... TGCCGACTCTAAAGTTACTGTTACTAATGACT 135061 28 92.9 32 .......A.........T.......... ATAGCTAGTCCTCTATCAAATATAAATCTGTA 135121 28 92.9 0 .......A.........T.......... | ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.2 32 GTTCATGGCGGCACACGCCATTTAGAAA # Left flank : GTAAGTGGCTAGAACGATTGACGGATTATGTGCACATCATTCAACCGCGTGAAGTGCCGCAAGCTAAGATCACAGGCTATGCACATTATTACCGTGTTAATCCAAAGATGAGTTTAGAAGAGCGCATTGCTCATCAAGCACAGCGTCATAATATTCCTTTGGCTGAAGCTAAGCAGCATTTTAAACAATATGTTGAGCAACCTGTGGTTGAGCCTTATGTTAGTTTAAAAAGTCTTAGTGCTAAACGTGAGGAAAATATAGATCGACCGTATCGCTTATATATTGGTAAGTCTGTTGCTGATGAGGCGAAAGATGGGAAATTTGGAACGTATGGACTAAGTAGAACTGCAACAGTTCCAGAGTTTTGACCCAATATTTTTTCTACTCTTTAACAGCTTAATAAAATCAATAAGTTACAACAAGCCATTTTTTGATTGGGTAACATGCCAAAATCCATGATAAATACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAAGGTAGGTCAAAGAGGAATCGAGGAGTTCACAGCCATGTAGGCAGCTTAATTTTGATTACTAACACACAACCTCTCTTTAAATTTCCGAATAGAAAATATAATCTGATGTGAACTTACTTATAGTGAAATTCTAATGCGCGGTGTTTACCTCATTACCAATGATGATCCTCTCCAATTATTACTAGAAAAATTAAATGCAGCATTGGGGACAGGGCATATTGCCATTTTGCAATATCGCCGTAAAAAAGTAGCGAAATTAGATCAACCAACCGAAGTCGAACAAATCAAAAGCCTTTGTGAAAAATACCAAGTTCCATTTGTGATTAATGATGATTTGGCAATGGCGGAAAAATTTGGTTTAGGAGTTCATCTTGGGCAGTCAGATGGTGAAATTACCGAAGCGACTCAACGTTTAGCGCAAGATGTCATTATTGGGCGTACTTGTCTCAACTCATTAGAGCTGGCTGACAAAGCAATTGCCGATGGGGCAAGCTATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCACACGCCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCATGGCGGTACACGCCATTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //