Array 1 258653-257953 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AMRJ01000002.1 Alcanivorax hongdengensis A-11-3 contig2, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    258652	    29	 100.0	    32	.............................	GGCGACGAGCGCATGAGCTATGAGGATGCGTT	
    258591	    29	 100.0	    32	.............................	AGAACGTGCCGCGCTATGGCCGACGCCCGAAG	
    258530	    29	 100.0	    32	.............................	CATTAAAACCCGCGTCACTAGGGAAGATGCGC	
    258469	    29	 100.0	    32	.............................	GCTGCACAAAATGAGCCAGCCAGCCGATCCAG	
    258408	    29	 100.0	    32	.............................	CCTCGCTGGCCAAAGCGGCGGCCAGGGCCACC	
    258347	    29	 100.0	    32	.............................	GACGCGCACAGCGTTCTGAAGCGCCTGCAGTT	
    258286	    29	 100.0	    32	.............................	CGCACCCATGACGGCATGATGGGCGGGGTGTT	
    258225	    29	 100.0	    32	.............................	GAGTGGGCCGGGACGCCATGCGAGTGGTGCAG	
    258164	    29	 100.0	    32	.............................	ATTTGCTAAATGCATATGACCGTATTATTTGG	
    258103	    29	 100.0	    32	.............................	CGCATTTCCTTCATCGCAGGAAATGGGGGAGG	
    258042	    29	 100.0	    32	.............................	GATTGGAGCATTCGAGGGCCTGCCCTAATCGA	
    257981	    29	  96.6	     0	...........................A.	|                               	
==========	======	======	======	=============================	================================	==================
        12	    29	  99.7	    32	CTGTTCCCCGCACCTGCGGGGATAAACCG	                                	       

# Left flank :   CCGGAGGCATCACGCCGCCGGAGCCGCCCGAGGACAGCCAACCGCCAGCCATTCCCGAGCCCAAGTCCTTGGGTGATGACGGCCACCGGAGCCAATAATGAGCATGCTGGTGGTGGTAACCGAGAACGTCCCGCCCCGGCTGCGTGGTCGGCTTGCTATCTGGCTACTGGAAATACGCGCCGGTGTATACGTGGGCGATGTGAGCAAGCGGGTCAGGGAGATGATTTGGGAACAAGTGGAAGCCATGGTGGAGGATGGTAATGTCGCCATGAGCTGGGCCACCAATACCGAATCCGGCTTTGACTTCCAGACCTGCGGTGAAAACCGGCGTGTGCCCATCGACTACGATGGCCTGCGCCTGGTTTCCTTTCTGCCCGATCCTGAATAAGGGATCTTCAACCGAAAACGCTCTTTAAAAATCTGGCTATATTTTGATCGATATGGCTGGTGGATTTTGAAAGGGAGTGTTTTCCCTTATAAATCAGCCATGTATATTTAGA
# Right flank :  GCTGGCAAGCGTGAGGGGCAGGCTGTTGAAAAGCCCCTTAGGTACCCTAATGCTTAAATGAGTAGCATTGTGAGCGTGCAACGACCTTGCTGGTGAACAGGCGTCAAACTACATTTACATCCAGGCTTTGTAGCACCTTCATCATTGTGTCATAGCCAAGCTTCAGGGTTTTTACAGGCTTTCCCGCCCCAACCCCGATGCCTTCGCCAGCGCCGCCATGCCCCGCGCTCGGGCCGCCTACCTGAGCGAGTAGAAGCCGCCATGAGGTAGCGCGCCTGCGCAGTGGAGCCGACGAGTAGGGCTTGCTATGATCAAGCCAACAATAAGCAAAACAGGGCATTGGCATGCTGGCATTTGTCGGTTTGATTCTCGGCCTTGGGCTCAGTCTGACGCTGGCGTTTATGGCCCTGTGTCTGCTACTTGTTCCCGTTTTCCCTACTATCGACAGATGGGCTGCAAAACGGCTCCACCGTCAGAGCAGACTGCTGGCGAACTACGAT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTGTTCCCCGCACCTGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [5,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCACCTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.55   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//