Array 1 49499-48208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JONK01000032.1 Chromobacterium haemolyticum DSM 19808 BR71DRAFT_scaffold00029.29_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49498 28 100.0 32 ............................ AGTGGCCGCTTCAAGTTTCTACTGTCGCCAGC 49438 28 100.0 33 ............................ CGGATGCAGCTGCGAGATCGAGATGTAATCGAT 49377 28 100.0 32 ............................ TGCCCGTCCAGGTCAATGAACACTCATGCGGA 49317 28 100.0 33 ............................ ACAAAGGCGTTGATATCGTATTTATTACCCAAC 49256 28 100.0 32 ............................ GACTGGGGAGCCTGAGCCGGCTGGACGTTGAG 49196 28 100.0 32 ............................ TCAAACGCATGAAAAGGACGGTGATCACATCT 49136 28 100.0 32 ............................ ATGGTGCATCTTTCGATTAATAGAACGATACG 49076 28 100.0 32 ............................ TTGACCCACACAGGCTGACGCCCCCTACCCGT 49016 28 100.0 32 ............................ AAGAGGAGGGCGCTCCGCAAGTCCCGCTAGCG 48956 28 100.0 33 ............................ AAAAAGTTCAAAGTGTCCGTTGTAGTGATCCGT 48895 28 100.0 32 ............................ CGCCGCCCCACGAGCGAGCCATCCGCCACTAG 48835 28 100.0 32 ............................ GATGGCGCGCGCAATGCCTGCTCGATGTTGTA 48775 28 100.0 32 ............................ ACGCACAAGGCGGCTCGCGTGATGGCCAAGCA 48715 28 100.0 32 ............................ AACAACAATCCTAACGGCTCCGGTATCAACAG 48655 28 100.0 32 ............................ ATCACGCGAGCCGCCTTGTGCGTGGGTGCGGT 48595 28 100.0 32 ............................ TTAGAATCTGCGGCTGTTGCGAAACGCCCGCC 48535 28 96.4 32 .............T.............. TAGGGGCCCCATGCGGGCGTTTTGTGCCCGCC 48475 28 92.9 32 .............T...T.......... GAACCAGCCACTGGGTCTGTGCGCTTCTATGG 48415 28 96.4 32 .............T.............. TTGCTGAGTGAAAGCCCTACCGTGGCCCTTGC 48355 28 96.4 32 .............T.............. TGGGCGACGCGGATGCAATGGTAGTCGTCCAT 48295 28 96.4 32 .............T.............. GTATTGGGGCACAACAGGCTATGGCGTGGACT 48235 28 96.4 0 .....................C...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.9 32 GTTCTCTGCCGGACAGGCAGCTTAGAAA # Left flank : ACGCCGCCTTGCAGCGGCTGATGGCCGGCGACTGGCTCAGCGGCATGCGCGACCACATCGCGCTGGCCGCCATCCAGCCGGTGCCGCCTCAGGCGGAAGCCTGGCAGGTGCGGCGCAAACAGGCCAAGACCAATCCGGACAAGGAACGCCGCCGGCTGGTGCGGCGGCTGGGCATCAGCGCGGAAGAAGCCGCGCAGCGCTTCCCGGACAGCGCCGCCCGCCGGCTAACCCTGCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAGCGCTATCAGTTGCACATCGAACAACGCCCGGCCCCAGCCACCCACAGCGGCCGCTTCAACACCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTAACCCTTTTTTTCCAGCCCCACCGCCAAGCCTTTTAAATCAATGGCTTGGCGCGGGGCGGGATAAAAGGGTTTTTATTGGGGAAAGCGATGCTTTCCCCGGCTGGCGCGGGTTTGCGGGAGAAAGGGTCTA # Right flank : GGCTCCCCAATCCCTCCCCGCAATCCTTCCAATCACATTATTCTCAATTTGAATAACAATCTAATTTTCCAGATTTTTAACATATATGCAATTGTGCTAGATTTTGTTTTCCAAAATCAAGAAAGGGCCGGCCCAGCCGGCGTTCCACGATGGCATATCCACATTTCACTCTCTCCGCGCTGGCGCTGGCCTTGGCAGGGCAAGCCTTGCCGGTGCTGGCCAGCGACGGCAACACGCTGGACAGCGTCACTATCACCGGTTCGCGCATTGCGCGCGCCGGCAAGGAAGGCGCCACCGGGGTCACGGTGTTGACCGGGGCCGATATCGAAAAACAGGGTTATACCAATGTTTACGACGCGCTGAACAATCTGGCGCAGAACACCGGCTTCACCCAGGGCGCGGATTTCGGGAATACCTTCACCCCGGCCGCCAACGCCATCAGCCTGCGCGGACTGGGCCCCAACCATACGCTGACCTTGCTCAACGGCCGCCGCATCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGACAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 60428-59260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JONK01000032.1 Chromobacterium haemolyticum DSM 19808 BR71DRAFT_scaffold00029.29_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 60427 28 100.0 32 ............................ ACGAGGGAAAGCCGTGCGTGCGCGGCCCCAAC 60367 28 100.0 32 ............................ TCAGCAGCCTGCGCCGGCGTGGCGCGCGAGCC 60307 28 100.0 32 ............................ GTAAAGTAAGCGAAAAGCATGATTTGCATAAT 60247 28 100.0 32 ............................ ATTCCGGCAACATGCAATAAGTCCCATCGTCC 60187 28 100.0 32 ............................ TAGTACGTCCGCTATCACGTATCCTGCAACGG 60127 28 100.0 32 ............................ TGGAAAAAGTGAGCGTCAACGATGGTGAGTTC 60067 28 100.0 32 ............................ ACAGAAGGGGGTAGGGGGACTAGGCCGCCAGC 60007 28 100.0 32 ............................ TCCTCCCGCCACAGATGATCGAAGCGCCCGCC 59947 28 100.0 32 ............................ GTCAGCGCAGAGTCCGCCGCGACGCGCGCTCG 59887 28 100.0 33 ............................ ACGGGCAATGCAAAGACCAGTACGGAGCGGGGG 59826 28 100.0 32 ............................ AGATCGGGAAAGACGGGAGAATGCCGTCATTC 59766 28 100.0 32 ............................ CTCGCGAACGAAATCAGGCGCAGCCGTGACAA 59706 28 100.0 32 ............................ ACTCCGTTCGTTATCTGCCGCCCATGTCCTGG 59646 28 100.0 32 ............................ ATCGCAGACGAGACCGCGAGAGGCGTCTACCG 59586 28 100.0 32 ............................ CCCGTGTTACAGGGATGGGGGTCGAACTGTGG 59526 28 96.4 32 .............C.............. TGAGCGTCGAGCAGAACGCGGCGGACGAAATG 59466 28 100.0 32 ............................ CAGAAAAGCTTGGTGCTCAAGTCTGTTCTCCG 59406 28 100.0 32 ............................ TGCAAAAACTCGGCAAGGGTTGCGCACTCGTC 59346 28 100.0 31 ............................ AGACAGCAAGCTAGCCGTATTGTCGGGCATG 59287 28 82.1 0 .C....G....A...A..C......... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.9 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CGTCATCGTCGTCATCTGG # Right flank : ACCGAGGCGGGGTCATTCAAGCTGCTATGTATTTGAAGACGAGCACAGCAAGAATCGGGTCGTCCACAAGGGCGCGCCGCCATAGACTTCGAGCATTTCAATGATACGAAGGAGAGCGGCATGGCTTGCCAACTGGAAACCCTGGACCCGGCTTTCGTCGAGCGGGCACGACACAAAGGAATTGATGCGCTCGGCCAAACCATCCAACGGATGACGGCCGCTGGCGGCGAACCCTTCCGCGACGCGCTGCGCCGCGCCACTCCGGGAGAGGGGCTGATTCTGGCGAGCTACAGCCCATTCCACCAAGCCGGGCCATACCGCGAGTATGGTCCGGTTTTCCTGGCGGCTGAATCACAGCCAGAACCTCTGCCCGAGCTGTCGTCGCTACTGCTCCGCGTCGGTGGGAATGCCTACCTTGGCGACAGCGTGGCGCTGCGCGCTTACGGCAAAGAACAGACCATGTTGGAAGCCACATTGCTGCCAACACATGAGGTGGAGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 537-149 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL543996.1 Chromobacterium haemolyticum DSM 19808 BR71DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 536 28 100.0 32 ............................ ATGCCAGAAACAACAGAGGAAAAAGCGGATTT 476 28 100.0 32 ............................ ATAAACGACATCGTCGGAGCCATGGAAAAAAG 416 28 100.0 32 ............................ CAAGAAAACGCTGACCATCGTTAGACCAAGGG 356 28 100.0 32 ............................ GTTAGCGTAACGTATAATAAATTATGTTCAAA 296 28 100.0 32 ............................ ATGAGAAACCTCCAGATCGGCGAGGTGGCCAC 236 28 100.0 32 ............................ TCTCAAATTAAGTGTGACCCTGTTTATCAATT 176 28 92.9 0 ..........................CC | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : TCCAGCTCATTGGTGCTGAACAAGGGCGTGCCGCCCCCGCCGCAAAAACCCACCATCACCCCGGCCTTGGCCAGCTCCCGCATTGCAGCCTGCGTCACTGAAGTGCCGGTGCCTAGCAAGATGCAAGTGGTGTTGGCGATGGGGATATTCCAGTACAGCGAAGCCTTGCCGGCATCGGTGACGTACTCCACCCGCCCGCCGTTGACCAGCACGCGGCAGTGCTGCAGATAGTAAAGATTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCGGACGGGGAAAAATCGGACATGACCATACCTATGGGATGTGACGCGATAACGCATCTTGCCATGAGCATGAACGGAGGAACAGGAAGCGCGGTAAAACCCTTTTTTTCAGGCCCCTCATCAGCCCCAGTAAAAACAAGCACTTAGCCTTTATCTGAAAATTTGGGTCAAACCCGGAAAAATCACCGAAGATGCCTACGCCATAAGGCGAGGGGGCGGTGTAAACTCTA # Right flank : CCGCTAACAAAACCTCTTGATGTCAGATGCGTATGCCCGCATTTGGCGAAGATGAAACGGAAAGTCGTCAGTCAGAAGCTCTGGAAGTCATTGCAACCACTACTTCCTCCACCACCGCGTTCCCGCCGGGGTGGGCGGCCGCGGTTGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //