Array 1 122985-125386 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMYI01000006.1 Pelagirhabdus alkalitolerans strain S5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 122985 24 95.8 42 G....................... GTATTAATGAGACAGAACGATTAGAAGATATTAAACTGGATT 123051 24 95.8 42 T....................... GTATTAATGAGACAAGATATAGGTTTTAATTATCATAATATG 123117 24 95.8 43 C....................... GTATTAATGAGACCTTATTTTATCTTGAATCTCTTCGCTATTG 123184 24 100.0 42 ........................ GTATTAATGAGACTCATCTAGGACGGATAATGAAAGAAACTT 123250 24 95.8 42 G....................... GTATTAATGAGACGTACTTATTATCAAGCTCGTTCATATTTG 123316 24 95.8 42 G....................... GTATTAATGAGACATTCAGCTTGTTTTAAACTCTCTTGCGGA 123382 24 95.8 41 T....................... GTATTAATGAGACTGGGACGCACCTTTTCTTAGTTGAAAAC 123447 24 100.0 42 ........................ GTATTAATGAGACGTTTTGCTTCTTTAAAAGCAGTTAGAAAA 123513 24 95.8 42 G....................... GTATTAATGAGACATCCACCGCTTTATTTAGAAGCTAGAATT 123579 24 95.8 43 T....................... GTATTAATGAGACTGGAGCTTTAGGCATGAGTGGTCCAGTCGG 123646 24 95.8 42 T....................... GTATTAATGAGACCGTCCAACCCTCTTTTGAGTCGCCGACAT 123712 24 95.8 42 G....................... GTATTAATGAGACTAGTATAGGGGGTTCTACATAATTCAATT 123778 24 95.8 42 T....................... GTATTAATGAGACTGCAATGACATGATCACCCATTCCTTGTA 123844 24 100.0 42 ........................ GTATTAATGAGACGCGTAACTATTTACATCAAACGCATGATG 123910 24 100.0 42 ........................ GTATTAATGAGACGTTGGAGCTGGGTGGAAGTGAGCGATGTC 123976 24 100.0 42 ........................ GTATTAATGAGACGAGAACAGTCGGTTGTTATTGAGGAAATG 124042 24 95.8 42 C....................... GTATTAATGAGACCTTTCATAAGATATTGGTAGATTCGGGTC 124108 24 100.0 42 ........................ GTATTAATGAGACACTATAATGAGCATATCGTTCACCGAGTG 124174 24 95.8 42 T....................... GTATTAATGAGACTAAAAGACCAAATCACGTATACAGACATG 124240 24 95.8 42 G....................... GTATTAATGAGACGTTAAGATCAGAGATTCAGCTACGAAAAG 124306 24 100.0 42 ........................ GTATTAATGAGACGCCTTCGCTACGGGCTTCCGCCCGAAATC 124372 24 100.0 42 ........................ GTATTAATGAGACGCACCTGACCAGTCGCCAGTTATCATCTG 124438 24 95.8 41 C....................... GTATTAATGAGACTCTGGCCTATGGATAATCGGAACTAACA 124503 24 100.0 42 ........................ GTATTAATGAGACCGCATGGCGCATTTCTTGCAGATAATCAG 124569 24 100.0 42 ........................ GTATTAATGAGACCACCGCCGAAGAAGTCTCTGAAATAAGCC 124635 24 95.8 42 T....................... GTATTAATGAGACGAAATTTCCCCGGAAGAAAGCAATTGTAA 124701 24 95.8 43 C....................... GTATTAATGAGACCGTGAAAATGGCTACTTAATCGCTAAAGGG 124768 24 95.8 42 C....................... GTATTAATGAGACTAAGTAAGAAAGATAACGATAAGGCTTAC 124834 24 95.8 42 G....................... GTATTAATGAGACATGACAAAATGGGTAGAAAAAGTGTACGT 124900 24 95.8 42 G....................... GTATTAATGAGACCAACAACAATCAGCGAATCAGATATCACA 124966 24 95.8 42 G....................... GTATTAATGAGACTAGTCGAAACAATTAAATACTTACATAAT 125032 24 100.0 43 ........................ GTATTAATGAGACCCATGGCATTACTCGGTTGACGATAAAGAA 125099 24 95.8 42 G....................... GTATTAATGAGACTGGAGACGAAGGGATTCTATTACAAACCA 125165 24 100.0 42 ........................ GTATTAATGAGACGTGAACGTAATCAACCTAAACAGAAATAC 125231 24 100.0 42 ........................ GTATTAATGAGACATTGTGACAGAGTCTTTTGCTTATATTCG 125297 24 95.8 42 T....................... GTATTAATGAGACTTGCGCTCTACATAAGCGCTAACGTACCG 125363 24 95.8 0 T....................... | ========== ====== ====== ====== ======================== =========================================== ================== 37 24 97.3 42 AGTTTTAGTACTCTGTGATTTTAG # Left flank : CAGTTAGCACACCAACAATCATTTATTTTACTTATCCTGAAAATTATTTAAGTCCTGGTGAACAAAAAGAAATGCGTGAATTGTTAAATCACTTATCAGCTGATGTTCCAATTATTGTGCTTACCAAATCAAAGCTTTTTTTATCTAGTCAATATAGAGGACTAAATTATTTTTCGCGCAATCAACAACTGTTTAATCAACAATTAATAAATGATATGGAATGGGAAGCTCCTACTATTTATGAACAAGATGAATTAATAGAAAGTTTAGTGAAGATTGTACACAAGTATATTGATTTAATCGAAATATATCCACTTGTGTCAAATTATCAAGACGCAGATATCCATTTGTTTAAATCAATTGATCTGTATGTATTCTCGTTCATAATGTACAAACTAAAATTAAGATTCACTTTTGAATTACAGGAGCAGGAGATTGAAGCTCCGGTATATAAGTACATCATGTTCATTTATGAAAATTTATGATATATTTTCATTAGA # Right flank : GGTATTAATGAGACATGATTGATTATTAGTTACCAAGCTCAACAGGTTTTATTACTATACACGTGTAGGCATTTTTCAAGTAGTGTAGATTTTTCAGAGTATGAGAGGGTGTGATGAATTGCCTTATTTTATATTTGGACTGTTTGGTTTAATTTTTTTATCTTGGGCTATCTGATTCAAAGATATCAAATGGCGGATTTAGTCATTGGTTTTAAGAAAGAAAAGCATGATAGAGAGGAGTTCACTCGTTTATTTGGGCATATTTTCATTTTTTTAGGTGTTTTAGTCATGATTATTTCGCTTATATTTTTCTTGCTTGATTCGATTATGCAACCATTGGATATGGACTTGTTCTTAATATATATCATTTTTTTCTTCTCCTCTCATCTACTCGCATCCGCAAAATTTTATATCAAACTTTGATAATATCCTCTTTGAAAGCTGGATGAATCGATCAACCTTTGTCAATGATCAAATAGATTGTTGGTATTTGGTTGTTT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTAGTACTCTGTGATTTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GGTTTTAGTACTCTGTAATTTTAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 355706-354679 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMYI01000002.1 Pelagirhabdus alkalitolerans strain S5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 355705 36 100.0 30 .................................... AACGACTTCGTTTTTGGATTGCGATTTATC 355639 36 100.0 30 .................................... AAGCTTCCGCCATATCATCAGTTAAACCAA 355573 36 100.0 30 .................................... TTTTGTATTATCTGAAAAAGTTACTTGTAA 355507 36 100.0 30 .................................... TTTTTTATTGCATTACCGATCACTATACTA 355441 36 100.0 30 .................................... TCTCTAAAATCAATATTAAAATCGACTTGT 355375 36 100.0 30 .................................... CGAAAAAAGAATGTTTTATGTTGATGAGGG 355309 36 100.0 29 .................................... ACTTACGAGGATATTGAAAAGCTGTTGAA 355244 36 100.0 31 .................................... CAAGTTCATCATTATCTAGATAAAGCCATTT 355177 36 100.0 30 .................................... ACCAGGCTACGCAGAAGGTGTGAGCCGTCC 355111 36 100.0 30 .................................... TTTAGTCGACAGTGAGAATGCTCGAATCAT 355045 36 100.0 30 .................................... TTATTCGATCGATGAGGATGGCGTTTCTGT 354979 36 100.0 30 .................................... GCTTGTTCTTCTCTATCAATAATTTTAAGG 354913 36 100.0 30 .................................... TTTGCAGCCATCGTTCTTCTAAAACACTCC 354847 36 100.0 31 .................................... CAAGTTCATCATTATCTAGATAAAGCCATTT 354780 36 100.0 30 .................................... GTACGTCTTTATCTCTCATAAGGTCAGCAA 354714 36 88.9 0 .....................A......T.....CT | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 99.3 30 GTTTTAGAGCTATGTTGTTTTGAATGATCCCAAAAC # Left flank : AAACCGCAATTGAGCAAGTGATGATGTCTCTAAACGATATTATTAGTAATGAAATTTTGGATCATGAATTAGATTTACAGACATCGGATATGACGCTGCAATCTTTATTTAAATCATTAAATCTTAAGATTAATAGTAATAGTGAATCAATTAATGAGAAAATCACCGATATTATTCAAGTTTTCAAATATCTATCGAAAAAGAAGTTACTTGTTTTTGTTAATGTTTGTTCGTATTTGACAAAAGAAGAAATACAAGAAACAATTAGATATTTATCGCTGAATGATATCACATCAATATTAATTGAGCCACGAGTTGTTAAGGGTGCCACTCAATACATTCTTGATAAAGATTACTTTTTAACTTATGGGAATGTGTTATAATTATTGAAAAAGATCCTTGATAATTAAAAGATTAATAAAATCAATCATTCAAAACTAAAGCTTTGCTATGAGCGAGTAGCGCGATTACGAAATTTCGTTAAAATTTATTTCCGCGAG # Right flank : GAAATATCTGGAAGAGAGGAGAGGTACATAAATGTTTGGTGTAATGGGTATGTATGTTTTTCATTTAATTGTTCTTCTCATTATGATTATTGCGGGTTATATGATCAAGTCTCAGATAGTGAATATTATAAAGAATAGTTCATCTATGAATTCAGAACAAATTCAGTCTGGCATTAAAATCACAAATATTATTTATTTTACACTTGTTATAATTATTGTGTTGATTATAGCTATTCCTTTTATACTGAGAATATAGTTGTTTCTATTACTTAAGCTCTATTTCAAATGGTATTAAATTAAAAAGGTATTTCATTAATTTTTATGAAATACCTTCTTTTTATCAAGTTTAAAGAATGACTGATTTATTGTACATAATATTAAGACCTTTGGCCATACTAGTGGTAGCTTTTTACAGGAGGCTGGATTATGGCTAATAAAAATTATCAAGTACCTAAAGAAACATCATCTTACTGGAAAAACAACACGTCTCTACCTAGCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 362741-362110 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMYI01000002.1 Pelagirhabdus alkalitolerans strain S5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 362740 36 100.0 30 .................................... ATTTTATGAATAATTGTTTTAATTGAAAGG 362674 36 100.0 30 .................................... GCTTTGTTAGTTTTGTTTGGTATTTTAACA 362608 36 100.0 31 .................................... TCACCTTCACGTTTAAACCTTAGATAGAACA 362541 36 100.0 30 .................................... CAAAGATTTTTTATATGGAGTAGATAATAG 362475 36 100.0 31 .................................... CAAATACGGCTTGTAGTAATTCTTTAAATTC 362408 36 100.0 30 .................................... GCGCTTATCTGTTTATTTTTTCAAATCGTT 362342 36 100.0 30 .................................... TGATCATGTAAATGATGAGATTTTACTAAA 362276 36 100.0 29 .................................... ACATGTGTTTACTCCTTAATGTTTTTTGT 362211 36 100.0 30 .................................... ATAAATTATGACGTAAGTGTACGAAAACTA 362145 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGAATGATCCCAAAAC # Left flank : TCTCACTCCCTACAATAGGTGTCGTTATTGGGTTATTGTGGGGTGTCTGGCATGGACCACTATTTTTAATTGATGTCTTCGCCCATTATCATTACGATTTTTCAACCTACTTACTGACAACAATCGTTTATTCGCTCATTTTGACGTTGATCGTTCACAAAACGAAAAGCGTGCTTTTAGCTATTCTATTGCATGCTGGAATCAATGCATTTGGTAATCTTGGCTTTGGCATCCCAATGGAAGTCAATGCAGGTATTATCATCTATCTGATTGTCCTGATCTTCGTTATGACGTTCGTACTTTATTTATTTGAAAAAAAGAAATGTAGGTAACAAAACAATATTAATGAGGATTACTTTTTAACTTTTGAAGATGTGTTATAATTATTGAAAAGGTCCTTGAGAATTAAATGATTAATAAAAATAAGTCATTCAAAACTGAAGCTTTGCTATGAGCGAGTAGCGCGATTACGAAATTTCGCGAAAATTTATTTCTGCGAG # Right flank : TATACTGTTTCTATGTAATTTAAATGTTACGTTGGATGATTATGTGTTTATAAAATAACAATTTTAAGTTATATCAGAAAAAGACATGAGATTTTTAACACCTCATGTCTTTTTTGTTATATAAATGTTGAAAAACGACCTAATAATTTGAAATATATTTCAAAAAAGTTGGAAATATGTTACGTTAGATATAGATACATAGTCATACTTCATTCTAAGTTATGACATTTTTATCCATTATAAGACAAAGAAAAAGCGCCGAGACAGCGCAACATTTCAGTTGATTTCGGACAAAGCCTTATTTTAACTCGCTATGTTGTGTTGAATAACCCCAACAACTTAAGTGTAGCAGATTAAAATTATTTTGAAAAGTGTTTTTATAAAAAATAAAAATTTAAGGAGTGTGTCACTATGAAAAAGAAGTATACGATCGGTTTAGACATTGGTACAAACAGTGTTGGATGGGCCGTCATAAGAGATGACTATGACTTGATTAGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //