Array 1 951330-952701 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030024.1 Salmonella enterica subsp. enterica serovar Ohio strain SA20120345 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 951330 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 951391 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 951452 29 100.0 32 ............................. TTAAAATAATCTGACGCCGCCTTGATGACTGA 951513 29 100.0 32 ............................. GACGCGTCGCTCGCGTCCGGCCAGCGTGCAGG 951574 29 100.0 32 ............................. AGACGCAGCTGATAGCGGATAACGTGTACGTT 951635 29 100.0 32 ............................. TTACAGGAAACATCCGGCGCGATATATACAAA 951696 29 96.6 32 ............T................ CGTATAACTATTTTGCGTTGTCGTGTGATTCA 951757 29 100.0 32 ............................. ATGCGGAGAAAATGGAATCAGAGCTACAGGAA 951818 29 100.0 32 ............................. GATTTCATTATGTGCAACTCCTCGCCCGTGGA 951879 29 100.0 32 ............................. GTTTCAGCGTGGAGCTGCATGATGTTCGCGCC 951940 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 952001 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 952062 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 952124 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 952185 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 952246 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 952307 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 952368 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 952429 29 100.0 32 ............................. CGTTTCTGGCGGGGGTAGGGAACGCCCAGAAA 952490 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 952551 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 952612 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 952673 28 93.1 0 ............T..........-..... | G [952690] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 968988-970482 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030024.1 Salmonella enterica subsp. enterica serovar Ohio strain SA20120345 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 968988 29 100.0 32 ............................. GGAAAACAAATAGATGGATTGCTCGATATCAC 969049 29 100.0 32 ............................. TCCTCGGGTGAATCCAGGTAAATGCGGTTACC 969110 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGGGAAAGACGCA 969171 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 969232 29 100.0 32 ............................. AGCGATTCATGCAGCGTGATTTCACATCCGTA 969293 29 100.0 32 ............................. TGCGGATTTACCGTCGGCAAAACCGCGCTGAT 969354 29 100.0 32 ............................. TCTTTACGGGCGCGCGCCTCCTGCAGTTTTGC 969415 29 100.0 32 ............................. GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA 969476 29 100.0 32 ............................. GAGCACGCCGGTGGCACTTACAGCAATATCAT 969537 29 100.0 32 ............................. CATTATCGGTTACCCCATCCTCACCGCCACTA 969598 29 100.0 32 ............................. GGCCTCACATCGGCGCCCGCTGGTCACGACCA 969659 29 100.0 33 ............................. AGCCGTGACGCGGTTCGCACTGAGTTAGCCTGG 969721 29 100.0 32 ............................. ACGTGCTCAACGAGTATCTGGTGATCCCGTTC 969782 29 100.0 32 ............................. GTTCTTCGCGTTTTGTATCGTTGGCGGTTGTT 969843 29 100.0 32 ............................. CGTGGGGGCGGCTGATTGATGATGCGGAGAAA 969904 29 100.0 32 ............................. GAAAATTTATGCCATGGGATAAGCACGCCGCA 969965 29 100.0 32 ............................. CAAGTGTTAGCGCCGCTTTGGTGTGATTCTGT 970026 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 970087 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 970148 29 100.0 32 ............................. GAAATATTCAACTGTATAGCGACACTACAAAG 970209 29 100.0 32 ............................. CAGGGCTAATAGTACCAATTGTTATCAATCCG 970270 29 100.0 32 ............................. TTTAACGCGGCCAATAACGATTTTATTTGATA 970331 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 970392 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 970453 29 96.6 0 ............T................ | A [970480] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAGTGCTCTTTAAAAAGATAAATTTGTTGCTTATAAGTTGGTAGATTGTTTTTGTGTGATAATTCATTGATGTGTAAGTATATTTTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCACCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //