Array 1 20541-28133 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKSS01000016.1 Acinetobacter junii strain TUM15409 sequence016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 20541 30 100.0 30 .............................. TCGAAAGGGTTGTCTATTGTTGAGTTAATA 20601 30 93.3 30 ............................CT AAAGATGAATCAACACAACAAACAACAACA 20661 30 96.7 30 ............................C. AGCGACGAACAAAAACTTCATGCTCGTTTG 20721 30 93.3 30 ............................TC TTTATGATACTGATGGTTTTCAATGGAATT 20781 30 93.3 30 ............................TG TTGAAAAGAAAATTCGAGGATTAGCTTGGA 20841 30 100.0 30 .............................. TAACAATTGCGTCAAATTGATCTTGTTGAG 20901 30 100.0 30 .............................. ATACTGTGAAGTCAATAGAGTAAGCAGAAC 20961 30 96.7 30 ............................G. CGAACGGTCAATCCCTCACCACTTCCACAC 21021 30 96.7 30 .............................T GAACAAATCAGAACTTTTCAAAGCAGCTCA 21081 30 96.7 30 .............................C ACGTTTCAATCAAATACTGAGGATTAAAAA 21141 30 100.0 30 .............................. ACTCATAAACCACCCACTCGCCATTCCACC 21201 30 93.3 30 ............................TT CAATTCGACACTTACCGCCTGATCGCTGAA 21261 30 93.3 30 ............................GT GTTCGCCCACTTTTCATTTCAGAAAAACCT 21321 30 96.7 31 .............................C CACCCAAGGCTTCAGTTTAACGCAGTCATTC 21382 30 96.7 30 .............................C AGCGGATACATCGCAGAAATGGTATTGAAT 21442 30 96.7 30 ............................C. TGAATCTTTTACAAAGTCTTTGCCATTAAT 21502 30 100.0 30 .............................. ACAATGGCAGCATAAAGGGTGTCACTTTTG 21562 30 93.3 30 ............................TG TCGGATTCCAGTTACGTGTGGGTGATGAAT 21622 30 93.3 30 ............................TT TGGCACCACCACGCAACCTTCGAGTTTTTT 21682 30 93.3 30 ............................TG CCCTCATCAATTTCAGCGGTATTTTTTGCT 21742 30 96.7 30 .............................G AAAAAGAAAAACCGCATTTAAGCGGCTTGT 21802 30 100.0 30 .............................. CCGCCAACATTAGCAGCAAAAGTAGGACGA 21862 30 93.3 30 ............................TC AGGAGCAAACAGCATGATTATTCGGCTATC 21922 30 96.7 30 .............................C ACAGCAGGGCAGATCACAGCGTAAAGCACG 21982 30 96.7 30 ............................C. CACCCGATGCTCTAAACGGGATCATGTTCT 22042 30 96.7 30 ............................T. TTGCTAATCAAGCTGAAGCCAATGCAGAAA 22102 30 96.7 30 .............................G GCATTCATTGCTGAGTGTATCAAACGTCAA 22162 30 96.7 30 .............................C TCCAAGTCTAAAAAACATAAACGACTTAAG 22222 30 96.7 30 ............................T. AAACCTCGCACCATCACATTAAACTTGGAG 22282 30 96.7 30 .............................C CGCGAAGAACTTTAGCGACTTGAGTTGCAT 22342 30 93.3 30 ............................CT GAAATTGAAAAAGGCAAGGCAGTTGAAGAT 22402 30 96.7 30 .............................C ATCTAGTTGGCTTTTGACTGGTAATTCATC 22462 30 96.7 30 .............................C GCAAACTTAACTTTTGAAATCCGCACAAAC 22522 30 93.3 30 ............................GT CACGGGGTTTATGAGATCAATTTTGACAAG 22582 30 96.7 30 ............................T. AATCCCCAACCTTAAACATGCTCACCCCCA 22642 30 96.7 30 .............................C TGTAAAAACGCATTGAAAGAGCGCTTAATT 22702 30 93.3 30 ............................TT GTGAGCACGACTTGCTAAGTAAGAACGACG 22762 30 96.7 30 .............................T GCAAACTTAACTTTTGAAATCCGCACAAAC 22822 30 93.3 30 ............................GT TTTGGGTCGGTCGATATTCAATAGCTATCG 22882 30 96.7 30 .............................C GAGGAAAACGACTGGATTTACTATCCAGTG 22942 30 96.7 30 .............................C TCAGATGTATTCAAACTTCGTGAAGTGGGT 23002 30 96.7 30 ............................T. TGCGCTGCAAGAAATTCTTCGTGAAGCATC 23062 30 93.3 30 ............................TC AACATCCATTTCAGCTGAAACAACCAAAAC 23122 30 100.0 30 .............................. CTTGAGCGGACATGACCTTCCTCAAACTTA 23182 30 93.3 30 ............................TT GTGGCACTGGATTGGATAAATTCCAACCGC 23242 30 93.3 30 ............................TT CTAACCACCAAGAATAATCTGCACCTATTA 23302 30 100.0 30 .............................. CCCGCAAAGATGCCCAACAAAACTAAGCCA 23362 30 93.3 30 ............................TG TTACTGGGTCAGCTTGTGGAGTTGCAGTAG 23422 30 96.7 30 .............................T GACTAAGCAGAGAACGTGGTACTTATCATA 23482 30 100.0 30 .............................. CTGCTTCACAAGTATCTAAAGTCTTAGCTC 23542 30 93.3 30 ............................TG GATAAGTCCAAAGATGACCATCAGGTAAAG 23602 30 96.7 30 ............................G. TACGGTTCAGATCACATACAATCCAACCAA 23662 30 93.3 30 ............................TT ACTGGAGAACTCCAAAGGTTTATCAATATG 23722 30 96.7 30 .............................C GACGTTAAAATTGTTCCTGCACAAAAGACT 23782 30 96.7 30 ............................T. AGCAGAATCCCTAACCTATGCAGGCAACGC 23842 30 93.3 30 ............................TC ATTATCATGTTATGTGGTGGATTCCAAAAG 23902 30 93.3 30 ............................TG TTGATGTTTCGTTTCTTAAAAATCTTTCTG 23962 30 96.7 30 .............................C CAGCAGCATTAGAAATAACTTGTTGAGCAA 24022 30 93.3 30 ............................TT ATGACGTTGATTTATCAAACGTACCTTTAC 24082 30 96.7 30 .............................G CTGAAGATACGAAAGTCGATATCGCTGAGA 24142 30 96.7 30 .............................T AATCTACGCATAACATAATGCACAGAACAA 24202 30 93.3 30 ............................CG AACAGGTTTTAGCTGAATATAAAGAAAACT 24262 30 93.3 30 ............................TC TGCAAACTCATAAATCATTGCAACATCCAA 24322 30 96.7 30 .............................G CATATCGTCCACTGGTCGGATCAATCCCCA 24382 30 93.3 30 ............................TG ACGATCTCAAAAAGCAATTTGAGCAAGACC 24442 30 93.3 30 ............................TC GATCACTGCTGTGTAATTTCTAAAACCTGA 24502 30 100.0 30 .............................. TGCAGAATCAGAAACAGACCAACAAAAAAA 24562 30 96.7 30 .............................T CTGATAAAGAAACGTCGCCAAATGCGGTAT 24622 30 100.0 30 .............................. CCCTTTCGAGCCAAAGCGCAACCTGTGCCG 24682 30 93.3 30 ............................GT GCTCTCTCCACCCCACCGCAACTGCATCAG 24742 30 96.7 30 ............................G. TGTAGGTACGCCACCTTTTGAGCCGATAGC 24802 30 96.7 30 ............................G. CCAGTGAAACCATTACACCTGCAGGAGAGC 24862 30 93.3 30 ............................TG CCAATCCCTGCAGGAATGCACCTGCGCCAA 24922 30 93.3 30 ............................GC TTCCTGTGATCTCTAATGCTATTGGGTCAA 24982 30 96.7 30 .............................T CCAGCCATTTTTGACAGTCTGCTTGTGAAA 25042 30 96.7 30 .............................G GTGAAATTACCCAGGTATCACACCAGGTGA 25102 30 96.7 30 .............................G TGTAGAGGTCAAAAGAATTGATCATTTGTG 25162 30 96.7 30 .............................G TGATTGAAGTTTTCAAAGACTCATTGCTGC 25222 30 100.0 30 .............................. GTTGCAATGCTGGCATTAAGTTACCTTGAT 25282 30 100.0 30 .............................. TTACCTGAAAACTTTACAATCCAAGTAAAT 25342 30 96.7 30 .............................G CAGGTCAAATCATCCTTTCAGCTTTTGGTA 25402 30 96.7 30 .............................G CAGCGCCACCTCTAAGAACTTTTGCTACTT 25462 30 100.0 30 .............................. GGAGGACTTTTTTTGCAAAGTTAGATAAAA 25522 30 96.7 30 .............................T AAGAAAACGTCAGCATGACCACGACCGTAA 25582 30 96.7 30 ............................C. CACCCGAAGCTCTAAACGGGATCATGTTCC 25642 30 96.7 30 ............................G. TCTCAAAGAATCAGGTCAGATCGAACAAGA 25702 30 96.7 30 .............................T TAATCTGAACATTGGCTGGTGGATATGGTC 25762 30 96.7 30 ............................G. CTCAAGTTCTTCTCTCTTGTTCTTTCTGAT 25822 30 93.3 30 ............................GC ATTGTGGCCCACTGCGCCAAAATGCTTTGC 25882 30 96.7 30 .............................T CGCGCTCAACTATGATCATCTGATAAGTGA 25942 30 96.7 30 ............................C. ACCACCCTCGCCCTTATCACCGCCAAACAA 26002 30 100.0 30 .............................. CGTAAAAATTGATCTGCTGCACCTTGATAG 26062 30 93.3 30 ............................GT AAAGAATTAGTCCTAAATTGTCCTGTAAAT 26122 30 93.3 30 ............................TC GATTTGAATCTAAAATAGACTCAGTCAATT 26182 30 96.7 30 .............................T ATAACCAATTAATTGGTTGTTTCATGAGTT 26242 30 93.3 30 ............................TC AGAGCGCAGCACAGCAAATGGCACAAAACT 26302 30 93.3 30 ............................GT TACAGCGTAAAATATGGAATTTTAAAAATC 26362 30 93.3 30 ............................CG AGCTGCTGCTAAGTAATAAAAAGGGGGTTC 26422 30 93.3 30 ............................GT TGATTTGTACAGTAATTCGCTTGTTATTAT 26482 30 93.3 30 ............................TT GTGCGAACAAGGACTGGATTATTAAATCCT 26542 30 100.0 30 .............................. GCCAAAGCGCATGAGGTGGCGAATCTGAGA 26602 30 100.0 30 .............................. CACTCACCCAAATTAGAGCAGCTTTGCAGA 26662 30 93.3 30 ............................TC AAGATAAAACTTATCGCGTAGCTGATCAAG 26722 30 93.3 30 ............................GC TTGAAACTCTAGCTAATGTTTGTGATTTTC 26782 30 100.0 30 .............................. TGATTCAACTGCGTCCAATAATGGGGATTA 26842 30 96.7 30 .............................T TAACAACAACTACAAGCGACTTATTCACTG 26902 30 100.0 31 .............................. ATTGGAGCAATACTGAAACCTATCTGACTGG 26963 30 96.7 30 .............................C ACATTAGTCAGCCTCCTTCGTAGTCCATCC 27023 30 96.7 30 .............................T ATATGAAATAAGTAAAATAACAGCGAGTAA 27083 30 93.3 30 ............................TT TAGCTAGAAAAATAGAAAATGCTTATAACT 27143 30 93.3 30 ............................TC GGGTTGAGCAATTTCTGTAGTGATTGGCTC 27203 30 93.3 30 ............................TT GTGAAAACTAGTGAGATCCTGCTTGCACAA 27263 30 93.3 30 ............................TT TAAAAAAGGAAATACACCCTTTAATCACAA 27323 30 93.3 30 ............................TC TCGGATATGCACCTATCTTTTTCATTGAGC 27383 30 96.7 30 ............................G. TTAGGGCAATGGCTGGCGATTCCACATGGG 27443 30 93.3 30 ............................TG AAAATAATGATTGGAGACAAACGCCCGATG 27503 30 93.3 30 ............................TT GTCGGCATGCACTATCACTTACACCGTGCT 27563 30 96.7 30 .............................T TGCGGTAATGCTCAAAGACGAGATCGACGC 27623 30 96.7 30 .............................T GTCAAAAGCCAAAGCAACTTTGTGCATTTG 27683 30 96.7 30 .............................G TGGTATGCAAATGAAGTTGATTCTTGGAGA 27743 30 96.7 31 .............................T AAAAGCCCCGATTAATTGGAAAGGGGGCGAA 27804 30 96.7 30 .............................T CAACTGGGGCAGCCTTGAGGACTGGAACAA 27864 30 93.3 30 ............................GT GCATTTAAACGTGATGCTTGCAGTTAGTTT 27924 30 93.3 30 ............................TT GCCAAGAATCCAAACGGCAAAGTTATTCCA 27984 30 96.7 30 .............................G CAATTCATGGTATGGGTTTTATTAGCGAAT 28044 30 93.3 30 .............C...............T AAAGCAATATTGACCAATAAAAGTAAGCGT 28104 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== =============================== ================== 127 30 95.9 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : GTAAATGGCTAGAACGATTCATTGATTATGTTCATATCATTCAACCGAGAGAAGTACCTCAAGCTAAAGTTACTGGTCATGCACACTATTATCGAGTCAATCCAAAGATGAGTGTTGAAGAGCGTATAGTTCATCAAGCGCAACGTCGAAATATTTCTTTGGATGAGGCTACGCAGCATTTTAAACAATATATTGAAAAACCTATTATTGAGCCTTATGTGAGTTTAAAAAGTCTGAGTGCAAAACGAGATCAAAATATAGATCGACCATATCGTTTATATATTGGTAAATCTCTAGTTGATGAGGCAAAAGATGGAGAGTTTGGAACGTATGGACTAAGTCGAATGGCAACAGTTCCAGAATTTTGACCCAATATTTTTTTACTATTTAACAGCTTAATAAAATCAATAAGTTACACCAAGTCGTTTTTTGATTGGGTAAATTGCTAAAAAACCATCATAAATACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : ACATGTGATTTATTCATATGAGCCATTTAGAAATGTAACGGTCATGATTGGCATTTGTTCTGTGTGTTCATGGCGTAATTTATTTTAAGAATTAATACGTGACATATAACTGTTGTTTTAAATTCATCGTATTATATGTCATTTAAAATACATCACATCAAGAAATATGATTCTTACTACATTCTAGATCTTTAATTTTTAAATAAGAAAATATACCCTGAAACCAACGTTTTTTTAGTGAAATTTTCATGCGCGGTTTATACCTCATCACCAATGATGATCCCATTCAACTTCTTTTAGAAAAGTTAGAGACTGCACTAGCTACTGGTCATATAGCTATTTTGCAATATCGTCGAAAAAAAATAGAAAAAATAAATCAACCATCTGAAGTGGAGTTGATCAAAGTCCTGTGTGAAAAATATCAAGTCCCTTTTGTCATTAATGATGATTTGGCGTTAGCAGAACAATTTGGTTTAGGTGTGCATCTAGGGCAGTCCGAT # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //