Array 1 4609-6688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVHT010000015.1 Citrobacter koseri strain CB00074 CB00074_contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4609 28 100.0 32 ............................ CGGAGCGCTTCAAGCCGCTACAGGAGGCCAGC 4669 28 100.0 33 ............................ TCGGACGCGTGGAAATAGTGTGCTGTCTGTGAA 4730 28 100.0 32 ............................ ACACACCGGGAAATCATCTATTACATGGCGTA 4790 28 100.0 33 ............................ GCGAGGCGGCATGAGTAAGCTGTTAACAAACAA 4851 28 100.0 33 ............................ CTCCAGGTACGTACTGATACCCTGCTGACGCCC 4912 28 100.0 32 ............................ TCTTCGCGCGGTGGCGTGGCGCTCTGCCAGTT 4972 28 100.0 33 ............................ ACAAGTAGCAGGTGGGAAAGTTGAAATAACGAT 5033 28 100.0 32 ............................ ACGTCATTTTGTTCAATCTCGATTTCCCTGAT 5093 28 100.0 32 ............................ GGGTATTATTAATGTGCTTGAGAGAGTTCCTT 5153 28 100.0 33 ............................ GCCGGGCGGCTGGCATTCATCAACCCGCTCACC 5214 28 100.0 32 ............................ TGGAAGCCGCAGGCAAATTCCCAAAACGCTGG 5274 28 100.0 33 ............................ CAATAGGCACGAGAACGGCGCACCATTCGATAT 5335 28 100.0 32 ............................ AGTGACTGCCCACGGAAACAATCATAACTTGA 5395 28 100.0 32 ............................ AGTTATCGCCCGACAGTTTGGCGCCAGCATCG 5455 28 100.0 32 ............................ TGGTAATTAGCACGTAATGCATTAGCCGAAGC 5515 28 100.0 32 ............................ TGAGGTGATATATCCGATTAATGGTTGGAAAT 5575 28 100.0 33 ............................ AGGTACAGAGTAAGTCGGCATCGGCCGGGCACA 5636 28 100.0 32 ............................ TTAAGGCGATACACGCAGCCGCCGATAGTTCC 5696 28 100.0 32 ............................ TGTCCCGGGGCAGTGGATTGCGTGCAGTAAAG 5756 28 100.0 32 ............................ CCACACCGAGCGGATTTTGCCAACAATGGCAG 5816 28 100.0 32 ............................ AGCGACAAGCCGACAGAAGATGATATTTGGGC 5876 28 100.0 34 ............................ CATCGAGTGTGGTCTGGCTGGTGTTCTCTTTGGG 5938 28 100.0 34 ............................ ACGATGAAATTCTGTAGCACCGGGCTGACGCGAA 6000 28 100.0 32 ............................ AACAGGCGTGGAGAACCACGGCGGCACTTTGC 6060 28 100.0 32 ............................ CGTCAGAATCTGGCGGGGATCCGTCAGTAAAA 6120 28 100.0 32 ............................ TCAAAAGTCAGATAACCTCTTTGCCTGATTTT 6180 28 100.0 32 ............................ AGATAAAATGCCCCGGCCACAGGAACCGGATC 6240 28 100.0 32 ............................ AGCAGAGGTGGCTCACATCGATATAGCCAGGT 6300 28 100.0 33 ............................ CACTGGGACACAGCCCCTTTGGAAACCTTCAGC 6361 28 100.0 32 ............................ CAAACGGGAAAGTCGATAAAATTATCGAGCTT 6421 28 100.0 32 ............................ GTATCGCCGACTGCGTCCCGATGCGGGAGAAA 6481 28 100.0 32 ............................ GCAACTCAGGATGATCCTTGTTCCGGGTTCAC 6541 28 100.0 32 ............................ AAGAATACGGCGCATCATCGGCGTGAAATCCG 6601 28 100.0 32 ............................ CGACGCGGAAGATCATAAAATCGCGTGCCGCT 6661 28 85.7 0 ......................ACC.C. | ========== ====== ====== ====== ============================ ================================== ================== 35 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATCAGAAAGGCGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTGACTGGCTGGCTGAGAAAGGCTATGACCGCGCGATGGGCGCACGTCCAATGACGCGCGTCGTCCAGGACAACCTGAAAAAACCGTTGGCAAACGAGCTGCTGTTCGGTTCGCTGGTTGGCGGCGGCCAGGTGACCGTTGCTCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCCGCGCATTAATCTCGTAACCGGTAAAATCTGAACGCCAGTCGCGTTCAGATAAACTCGCTAAAATCCGTAATCTCTTTTGAGGTTACGGATTTTTTTGCCGTCATGCCCCGGATACCTGGAAACCCTTTTTTTGAGTGTTTTTTTAACGCTATGATTTTTATGTGTTTATATTAGGTGGCGATAAAAGGGTATTTAATCATTTCGTTGATATTTTTCTTTATTAACACCATGATAGCGACGAACTGCTTCA # Right flank : ACCACAAATGTAATTATTTATTTTGAAAGCTCTTTTGTTGATTTTTATCATTTCATCTGCCGGAGCCTCATCAGTACTATCGATAACACATAAAATGACGGGGTTTAAATAGATATGTCTGCAAATTCAATTATGCCTTCGGATTTAAAAACCATTCTGCACTCTAAACGCGCCAATATATATTATCTTGAAAAGTGCCGTGTGCAGGTAAATGGTGGGCGAGTTGAATACATTACGAGTGCAGGTAATGAATCATATTACTGGAATATTCCTGTCGCGAATACTACGGCAGTGATGCTGGGTATGGGCACGTCAGTGTCACAGGCGGCGATGCGGGAGTTTGCAAGGGCTGGCGTGATGGTTGGCTTCTGTGGCACTGATGGTACGCCGCTTTATTCCGCAAATGAAGTTGATATTGATGTGTCATGGCTGTCACCGCAAAGTGAATATCGACCGACTGAATATTTACAGCATTGGGTCTCTTTCTGGTTTAAAGAAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 17948-18095 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVHT010000015.1 Citrobacter koseri strain CB00074 CB00074_contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17948 28 100.0 32 ............................ ATGCTCGCGTACTGGTTCGTGGCGATATCGCC 18008 28 100.0 32 ............................ AAGTTGATCACCGTTGTTCGCCGTAGCGTTTC 18068 28 85.7 0 ....................T.C..T.T | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAACTGCATCACTGGCCCGGACTGAGCCTGGCTTCAGGTAAACATATCCACCGCTGGGAACTCTTTGGTCCACAGGGCGCGCGTGCTGAAGTTCACTTTACACCGCGTTTGATCACTACAGACATGCTGGCGCTGCGTGAAGCGGCCGTTGCGGGCGTCGGCCTCGTTCAGTTACCTGTTTTAATGGTGAAAGACCAACTGGCTGCGGGGGAGCTGGTTGCCTTGCTGGAAGGATGGGAACCCAGAAGAGAGGTGATTCATGCGGTATTCCCGTCCCGCCGTGGATTGCTGCCGTCCGTACGCGCACTGGTGGATTTTTTGACAGAAGAGTATGCGCGGATGGTGGAAGATTAAAACAGAGCGCAATATACCCCTTTTTATTTTATGTTACTAACTTATTGATTTTATTTTATATATACAACTTGGGTGAAAAAGGGTCTGACAGGAAGACGTTGCGTTTTTCTTCAATAAATCAACGTGATTGTCTGATATTATTCCT # Right flank : TTGAATGTAGAAGGAAGGGACGCTGCGGGGAATAAAAATAACGTTAATTCGCATCAACGGTATTCATGCAGGAAAGGGACAACAAAAAGGCCGGATAAACCGACCTTTTTTTATCTTTACGCCACCCGGGCGTGAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAATTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTAAATAAGTAAAGATTTGCGCGTTTAAAACGCAGCAAATCAGGTTTGGCGCATTACTCCGAAAAACACGGCAAAGCCGCAC # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //